FC873352

Overview
NameFC873352
Unique NameFC873352
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length812
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1106 contig Ccv1_Contig1106:1..812. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873352 vs. ExPASy Swiss-Prot
Match: PGTB1_RAT (Geranylgeranyl transferase type-1 subunit beta OS=Rattus norvegicus GN=Pggt1b PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.821e-43
Identity = 93/247 (37.65%), Postives = 142/247 (57.49%), Query Frame = 1
Query:   61 SSSSDGEEQAASDGSSSQFNRQQHVAFLMMMYESLPHHYQYQEINRITLAHFAISGLCLLGALDRVDKDAVSDWVLSLKAHPSNKADLTNGEFYGFHGSP--SSQLHPDDNGVLMH--NGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNMS 789
            +++ D     + +G    F R +HV F     + LP  Y   E +R+T+A FA+SGL +L +LD V+KD + +W+ SL+  P+   D +N +  GF GS       +P  N    H  +  ++A TY  L+ L  +G + + +D ++ L  +R LQ  DGSF  +  G+E D+RFVYCA+ IC++L +WSGMD ++A +YI    SYD G     G ESHGG T+C +ASL LMG +E+    K ++
Sbjct:    2 AATEDDRLAGSGEGERLDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTE--DRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELN 246          
BLAST of FC873352 vs. ExPASy Swiss-Prot
Match: PGTB1_MOUSE (Geranylgeranyl transferase type-1 subunit beta OS=Mus musculus GN=Pggt1b PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.284e-43
Identity = 93/247 (37.65%), Postives = 140/247 (56.68%), Query Frame = 1
Query:   61 SSSSDGEEQAASDGSSSQFNRQQHVAFLMMMYESLPHHYQYQEINRITLAHFAISGLCLLGALDRVDKDAVSDWVLSLKAHPSNKADLTNGEFYGFHGSP--SSQLHPDDNGVLMH--NGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNMS 789
            +++ D     + +G    F R +HV F     + LP  Y   E +R+T+A FA+SGL +L +LD V+KD + +W+ SL+  P+   D +N    GF GS       +P  N    H  +  ++A TY  L+ L  +G +   +D ++ L  +R LQ  DGSF  +  G+E D+RFVYCA+ IC++L +WSGMD ++A +YI    SYD G     G ESHGG T+C +ASL LMG +E+    K ++
Sbjct:    2 ATTEDDRLAGSGEGERLDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTE--DRSNLSRCGFRGSSYLGIPFNPSKNPGAAHPYDSGHIAMTYTGLSCLIILGDDLGRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELN 246          
BLAST of FC873352 vs. ExPASy Swiss-Prot
Match: PGTB1_BOVIN (Geranylgeranyl transferase type-1 subunit beta OS=Bos taurus GN=PGGT1B PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.388e-42
Identity = 92/247 (37.25%), Postives = 140/247 (56.68%), Query Frame = 1
Query:   61 SSSSDGEEQAASDGSSSQFNRQQHVAFLMMMYESLPHHYQYQEINRITLAHFAISGLCLLGALDRVDKDAVSDWVLSLKAHPSNKADLTNGEFYGFHGSP--SSQLHPDDNGVLMH--NGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNMS 789
            +++ D     + +G    F R +HV F     + LP  Y   E +R+T+A FA+SGL +L +LD V+KD + +W+ SL+  P+   D +N    GF GS       +P  N    H  +  ++A TY  L+ L  +G + + ++ ++ L  +R LQ  DGSF  +  G+E D+RFVYCA+ IC++L +WSGMD ++A  YI    SYD G     G ESHGG T+C +ASL LMG +E+    K ++
Sbjct:    2 AATEDERPTGSGEGERLDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTE--DRSNLNRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLVILGDDLSRVNKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAINYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELN 246          
BLAST of FC873352 vs. ExPASy Swiss-Prot
Match: PGTB1_HUMAN (Geranylgeranyl transferase type-1 subunit beta OS=Homo sapiens GN=PGGT1B PE=1 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 3.119e-42
Identity = 91/252 (36.11%), Postives = 140/252 (55.56%), Query Frame = 1
Query:   61 SSSSDGEEQAASDGSSSQFNRQQHVAFLMMMYESLPHHYQYQEINRITLAHFAISGLCLLGALDRVDKDAVSDWVLSLKAHPS------NKADLTNGEFYGFHGSPSSQ---LHPDDNGVLMHNGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNMS 789
            +++ D     + +G    F R +HV F     + LP  Y   E +R+T+A FA+SGL +L +LD V+KD + +W+ SL+  P+      N+       + G   +PS      HP D+G       ++A TY  L+ L  +G + + ++ ++ L  +R LQ  DGSF  +  G+E D+RFVYCA+ IC++L +WSGMD ++A  YI    SYD G     G ESHGG T+C +ASL LMG +E+    K ++
Sbjct:    2 AATEDERLAGSGEGERLDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLNRCGFRGSSYLGIPFNPSKAPGTAHPYDSG-------HIAMTYTGLSCLVILGDDLSRVNKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAITYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELN 246          
BLAST of FC873352 vs. ExPASy Swiss-Prot
Match: PGTB1_DICDI (Geranylgeranyl transferase type-1 subunit beta OS=Dictyostelium discoideum GN=pggt1b PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.112e-31
Identity = 81/229 (35.37%), Postives = 125/229 (54.59%), Query Frame = 1
Query:  109 SQFNRQQHVAFLMMMYESLPHHYQYQEINRITLAHFAISGLCLLGALDRVDKDA--VSDWVLSLKAHPSNKADLTNGEFYGFHGSP--------SSQLHPDDNGVLMHNGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQH-DGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIE 762
            S  N ++   F      +LP  Y     N ++L  F +SGL LL   D ++K+   + +WV S +  PS      N E  GF G             +H  +NG L ++  +  +TYCAL IL+ +G +F+ ++ K+I+ S+R  Q+  DG+        + DLR ++ A AI F+L+DWS +++E A  YI +C SY+  FG TP  E+HGG TYCA+ASL L+G ++
Sbjct:    3 SCINEEKLAKFFQRSLNALPAPYTSGLPNHLSLIFFVVSGLDLLNKTDILEKEKQDIINWVYSRQILPSKDNPEINLENCGFRGYNFLGQEFCCDKSVHTSENGPLEYDLPSTPNTYCALLILRILGDDFSGVNKKAIIDSLRKRQRESDGAISGSPNVGDYDLRHLFSACAISFILDDWSAINKESAIDYIKSCLSYEFAFGQTPQQEAHGGPTYCAIASLSLLGRLD 231          
BLAST of FC873352 vs. ExPASy Swiss-Prot
Match: PGTB2_DICDI (Probable geranylgeranyl transferase type-2 subunit beta OS=Dictyostelium discoideum GN=rabggtb PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.102e-18
Identity = 68/196 (34.69%), Postives = 102/196 (52.04%), Query Frame = 1
Query:  175 YQYQEINRITLAHFAISGLCLLGALDRVDKDAVSDWVLSLKAHPSNKADLTNGEFYGFHGSPSSQLHPDDNGVLMHNGSNLASTYCALAILKAVGYNFAN-IDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFI 759
            Y   E  R+   ++ +S L LL +LD++DK+ V  W+LS +         +NG   GF G+ S   H             L ST  A+ IL  + Y+  + ID  S++  +  LQ+ DGSF+   +G E D RF Y A     LL+    ++ E+A  YIL+CQ++DGGFG  PG+ESH G  +  V +L ++  I
Sbjct:   43 YWVTEHIRMNGMYWGLSSLYLLKSLDKLDKNEVIQWLLSCQK--------SNG---GFGGNTSHDDH-------------LLSTLSAVQIL--IQYDALDKIDINSVVDYVVKLQREDGSFVGDQWG-EVDTRFSYAAIMCLSLLKSLDKINCEKAVEYILSCQNFDGGFGSIPGAESHAGQIFTCVGALSILNEI 211          
BLAST of FC873352 vs. ExPASy Swiss-Prot
Match: PGTB1_SCHPO (Geranylgeranyl transferase type-1 subunit beta OS=Schizosaccharomyces pombe GN=cwg2 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.923e-17
Identity = 68/235 (28.94%), Postives = 108/235 (45.96%), Query Frame = 1
Query:  112 QFNRQQHVAFLMMMYESLPHHYQYQEINRITLAHFAISGLCLLGALDRVDKDAVSDWVLSLKAHPSNKADLTNGEFYGFHGSPSSQLHPDDNGVLMHNGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGA--EKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVA--SLRLMGFIEDNVLSKNMSSSIID 804
            +  R +H+AF        P  Y+  +  R  LA F + GL LL AL+ +D D    W+  +  +   K   + G  Y    +  + + P    +       LA T  ++  L  +G N + ID   I   +   +   G F  I   +  ++D+R +Y A  I  LL D+S  D   +  YI +CQ Y+GGF L P  E+H G T+CA+A  SL L      ++ + N S +++D
Sbjct:    2 ELTRAKHIAFFKRHLILFPTPYEEHDCERTVLAFFCLLGLDLLNALNTIDDDDKKSWIEWIYKNYVTKE--SKGIKYSGFQAYRTGIQP----ISFEQEPQLAGTVFSICCLLFLGDNLSRIDRDLIKNFVELCKTSQGHFRSIAVPSCSDQDMRQLYMATTIASLL-DFSLSDPLCSIQYIKSCQRYEGGFSLLPYGEAHAGATFCALASWSLILKMIPNSSLNTSNQSYNLMD 229          
BLAST of FC873352 vs. ExPASy Swiss-Prot
Match: GGTB2_CAEEL (Probable geranylgeranyl transferase type-2 subunit beta OS=Caenorhabditis elegans GN=ggtb-1 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 5.014e-16
Identity = 58/199 (29.15%), Postives = 97/199 (48.74%), Query Frame = 1
Query:  169 HHYQYQEINRITLAHFAISGLCLLGALDRVDKDAVSDWVLSLKAHPSNKADLTNGEFYGFHGSPSSQLHPDDNGVLMHNGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIED 765
            +HY   E  R++  ++ ++ + L   L+R+  + + ++VL  +         T+G   G+  +P    H      L+H       T CA+  L  +  +    D+ +I   ++ LQQ DGSF       E D RF  C+ A C LL   S ++ + A  +++ C + DGGFG  PGSESH G  YC V +L + G +++
Sbjct:   43 YHYIMAEHLRVSGIYWCVNAMDLSKQLERMSTEEIVNYVLGCRN--------TDG---GYGPAPGHDSH------LLH-------TLCAVQTL-IIFNSIEKADADTISEYVKGLQQEDGSFCG-DLSGEVDTRFTLCSLATCHLLGRLSTLNIDSAVRFLMRCYNTDGGFGTRPGSESHSGQIYCCVGALAIAGRLDE 215          
BLAST of FC873352 vs. ExPASy Swiss-Prot
Match: FNTB_DICDI (Protein farnesyltransferase subunit beta OS=Dictyostelium discoideum GN=fntB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.459e-15
Identity = 58/230 (25.22%), Postives = 114/230 (49.57%), Query Frame = 1
Query:   82 EQAASDGSSSQFNRQQHVAFLMMMYESLPHHYQYQEINRITLAHFAISGLCLLGALDRVDK-DAVSDWVLSLKAHPSNKADLTNGEFY----GFHGSPSSQLHPDDNGVLMHNGSNLASTYCALAILKAVGY--NFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLM 750
            E+  S  + +   +++ + FLM   E +P  +Q  + +++ ++ + ++G+ +L +LD      + +   LS+  +  N  +  N E      GF G  S   H             + ST+ A++ L  +G   ++  ID +++   +  ++  +G+F     G E D R  YCA A+  +L   +         ++L+CQ+Y+GGFG  P +E+HGG T+C+VA+L ++
Sbjct:   45 EKLNSTENGNIIEKKKILNFLMNGIEKIPMSHQGLDSSKVWISFWILNGMDMLDSLDSYPNISSRASKYLSILQNDDNNGNNNNRENNQNGGGFGGGNSHTSH-------------VVSTFAAVSALYVIGTEESYKTIDREAMYKFLMRMKTKEGAFTS-EDGGEYDSRTTYCAIAVASMLNILTAELERGVVDFLLSCQTYEGGFGAYPFNEAHGGYTFCSVAALSIL 260          
BLAST of FC873352 vs. ExPASy Swiss-Prot
Match: FNTB_HUMAN (Protein farnesyltransferase subunit beta OS=Homo sapiens GN=FNTB PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.751e-14
Identity = 67/235 (28.51%), Postives = 108/235 (45.96%), Query Frame = 1
Query:   79 EEQAASDGSSSQFN---------RQQHVAFLMMMYESLPHHYQYQEINRITLAHFAISGLCLLGALDRVDKDAVSDWVLSLKAHPSNKADLTNGEFYGFHGSPSSQLHPDDNGVLMHNGSNLASTYCALAILKAVGYNFAN--IDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLM 750
            EE+     SS +FN         R++H  +L      L   Y+  + +R  L ++ +  L LL   + + +   +D    L+   S +         GF G P    H             LA TY A+  L  +G   A   I+ + +L  + +L+Q DGSF+ +H G E D+R  YCAA++  L    +    E    +I  CQ+++GG G  PG E+HGG T+C +A+L ++
Sbjct:   52 EEKIQEVFSSYKFNHLVPRLVLQREKHFHYLKRGLRQLTDAYECLDASRPWLCYWILHSLELLD--EPIPQIVATDVCQFLELCQSPEG--------GFGGGPGQYPH-------------LAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFL-MHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVIL 262          
The following BLAST results are available for this feature:
BLAST of FC873352 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
PGTB1_RAT2.821e-4337.65Geranylgeranyl transferase type-1 subunit beta OS=... [more]
PGTB1_MOUSE6.284e-4337.65Geranylgeranyl transferase type-1 subunit beta OS=... [more]
PGTB1_BOVIN2.388e-4237.25Geranylgeranyl transferase type-1 subunit beta OS=... [more]
PGTB1_HUMAN3.119e-4236.11Geranylgeranyl transferase type-1 subunit beta OS=... [more]
PGTB1_DICDI1.112e-3135.37Geranylgeranyl transferase type-1 subunit beta OS=... [more]
PGTB2_DICDI4.102e-1834.69Probable geranylgeranyl transferase type-2 subunit... [more]
PGTB1_SCHPO5.923e-1728.94Geranylgeranyl transferase type-1 subunit beta OS=... [more]
GGTB2_CAEEL5.014e-1629.15Probable geranylgeranyl transferase type-2 subunit... [more]
FNTB_DICDI1.459e-1525.22Protein farnesyltransferase subunit beta OS=Dictyo... [more]
FNTB_HUMAN2.751e-1428.51Protein farnesyltransferase subunit beta OS=Homo s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BG01FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BG01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873352 ID=FC873352; Name=FC873352; organism=Citrus clementina; type=EST; length=812bp
TTTCTCTCTTCGGCCCTGAAAATGGAACCAGCTACAGAGAATGAGTGGGA
CCGGCTATCATCATCTTCATCGGACGGAGAAGAACAAGCAGCATCAGATG
GTTCATCATCACAATTCAACAGGCAGCAACACGTGGCGTTCCTGATGATG
ATGTACGAATCGTTGCCGCATCACTACCAGTACCAGGAGATCAACCGCAT
CACTCTCGCTCACTTTGCCATCTCCGGCCTTTGCCTCCTCGGTGCCTTAG
ATCGCGTTGACAAGGATGCGGTGTCAGATTGGGTTTTATCACTGAAAGCT
CACCCAAGTAATAAAGCTGACCTGACGAATGGAGAATTCTATGGATTCCA
CGGTTCTCCAAGTTCTCAGCTCCATCCAGATGATAATGGGGTTTTGATGC
ACAATGGTAGTAACTTGGCAAGCACTTACTGTGCCCTAGCCATACTAAAG
GCCGTTGGTTATAATTTTGCAAACATTGACAGCAAATCAATATTGACATC
AATGAGAAATCTTCAACAGCACGATGGGAGTTTTATGCCGATCCATTTTG
GAGCAGAGAAGGATCTTCGGTTTGTATATTGTGCTGCTGCTATCTGCTTT
TTGTTGGAGGATTGGAGTGGCATGGACCGGGAGAGAGCAAAGGCGTACAT
TTTAAATTGCCAGTCATATGACGGTGGGTTTGGTTTGACTCCTGGTTCAG
AATCACATGGGGGTGGTACATACTGTGCTGTCGCATCTCTCCGTTTGATG
GGATTCATTGAAGACAATGTTCTTTCTAAAAATATGTCATCTTCAATTAT
TGACCTGCCGTT
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