FC873352
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC873352 vs. ExPASy Swiss-Prot
Match: PGTB1_RAT (Geranylgeranyl transferase type-1 subunit beta OS=Rattus norvegicus GN=Pggt1b PE=1 SV=1) HSP 1 Score: 175.637 bits (444), Expect = 2.821e-43 Identity = 93/247 (37.65%), Postives = 142/247 (57.49%), Query Frame = 1 Query: 61 SSSSDGEEQAASDGSSSQFNRQQHVAFLMMMYESLPHHYQYQEINRITLAHFAISGLCLLGALDRVDKDAVSDWVLSLKAHPSNKADLTNGEFYGFHGSP--SSQLHPDDNGVLMH--NGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNMS 789 +++ D + +G F R +HV F + LP Y E +R+T+A FA+SGL +L +LD V+KD + +W+ SL+ P+ D +N + GF GS +P N H + ++A TY L+ L +G + + +D ++ L +R LQ DGSF + G+E D+RFVYCA+ IC++L +WSGMD ++A +YI SYD G G ESHGG T+C +ASL LMG +E+ K ++ Sbjct: 2 AATEDDRLAGSGEGERLDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTE--DRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELN 246
BLAST of FC873352 vs. ExPASy Swiss-Prot
Match: PGTB1_MOUSE (Geranylgeranyl transferase type-1 subunit beta OS=Mus musculus GN=Pggt1b PE=2 SV=1) HSP 1 Score: 174.481 bits (441), Expect = 6.284e-43 Identity = 93/247 (37.65%), Postives = 140/247 (56.68%), Query Frame = 1 Query: 61 SSSSDGEEQAASDGSSSQFNRQQHVAFLMMMYESLPHHYQYQEINRITLAHFAISGLCLLGALDRVDKDAVSDWVLSLKAHPSNKADLTNGEFYGFHGSP--SSQLHPDDNGVLMH--NGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNMS 789 +++ D + +G F R +HV F + LP Y E +R+T+A FA+SGL +L +LD V+KD + +W+ SL+ P+ D +N GF GS +P N H + ++A TY L+ L +G + +D ++ L +R LQ DGSF + G+E D+RFVYCA+ IC++L +WSGMD ++A +YI SYD G G ESHGG T+C +ASL LMG +E+ K ++ Sbjct: 2 ATTEDDRLAGSGEGERLDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTE--DRSNLSRCGFRGSSYLGIPFNPSKNPGAAHPYDSGHIAMTYTGLSCLIILGDDLGRVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELN 246
BLAST of FC873352 vs. ExPASy Swiss-Prot
Match: PGTB1_BOVIN (Geranylgeranyl transferase type-1 subunit beta OS=Bos taurus GN=PGGT1B PE=2 SV=1) HSP 1 Score: 172.555 bits (436), Expect = 2.388e-42 Identity = 92/247 (37.25%), Postives = 140/247 (56.68%), Query Frame = 1 Query: 61 SSSSDGEEQAASDGSSSQFNRQQHVAFLMMMYESLPHHYQYQEINRITLAHFAISGLCLLGALDRVDKDAVSDWVLSLKAHPSNKADLTNGEFYGFHGSP--SSQLHPDDNGVLMH--NGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNMS 789 +++ D + +G F R +HV F + LP Y E +R+T+A FA+SGL +L +LD V+KD + +W+ SL+ P+ D +N GF GS +P N H + ++A TY L+ L +G + + ++ ++ L +R LQ DGSF + G+E D+RFVYCA+ IC++L +WSGMD ++A YI SYD G G ESHGG T+C +ASL LMG +E+ K ++ Sbjct: 2 AATEDERPTGSGEGERLDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTE--DRSNLNRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLVILGDDLSRVNKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAINYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELN 246
BLAST of FC873352 vs. ExPASy Swiss-Prot
Match: PGTB1_HUMAN (Geranylgeranyl transferase type-1 subunit beta OS=Homo sapiens GN=PGGT1B PE=1 SV=2) HSP 1 Score: 172.17 bits (435), Expect = 3.119e-42 Identity = 91/252 (36.11%), Postives = 140/252 (55.56%), Query Frame = 1 Query: 61 SSSSDGEEQAASDGSSSQFNRQQHVAFLMMMYESLPHHYQYQEINRITLAHFAISGLCLLGALDRVDKDAVSDWVLSLKAHPS------NKADLTNGEFYGFHGSPSSQ---LHPDDNGVLMHNGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIEDNVLSKNMS 789 +++ D + +G F R +HV F + LP Y E +R+T+A FA+SGL +L +LD V+KD + +W+ SL+ P+ N+ + G +PS HP D+G ++A TY L+ L +G + + ++ ++ L +R LQ DGSF + G+E D+RFVYCA+ IC++L +WSGMD ++A YI SYD G G ESHGG T+C +ASL LMG +E+ K ++ Sbjct: 2 AATEDERLAGSGEGERLDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKDDIIEWIYSLQVLPTEDRSNLNRCGFRGSSYLGIPFNPSKAPGTAHPYDSG-------HIAMTYTGLSCLVILGDDLSRVNKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAITYIRRSMSYDNGLAQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELN 246
BLAST of FC873352 vs. ExPASy Swiss-Prot
Match: PGTB1_DICDI (Geranylgeranyl transferase type-1 subunit beta OS=Dictyostelium discoideum GN=pggt1b PE=2 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 1.112e-31 Identity = 81/229 (35.37%), Postives = 125/229 (54.59%), Query Frame = 1 Query: 109 SQFNRQQHVAFLMMMYESLPHHYQYQEINRITLAHFAISGLCLLGALDRVDKDA--VSDWVLSLKAHPSNKADLTNGEFYGFHGSP--------SSQLHPDDNGVLMHNGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQH-DGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIE 762 S N ++ F +LP Y N ++L F +SGL LL D ++K+ + +WV S + PS N E GF G +H +NG L ++ + +TYCAL IL+ +G +F+ ++ K+I+ S+R Q+ DG+ + DLR ++ A AI F+L+DWS +++E A YI +C SY+ FG TP E+HGG TYCA+ASL L+G ++ Sbjct: 3 SCINEEKLAKFFQRSLNALPAPYTSGLPNHLSLIFFVVSGLDLLNKTDILEKEKQDIINWVYSRQILPSKDNPEINLENCGFRGYNFLGQEFCCDKSVHTSENGPLEYDLPSTPNTYCALLILRILGDDFSGVNKKAIIDSLRKRQRESDGAISGSPNVGDYDLRHLFSACAISFILDDWSAINKESAIDYIKSCLSYEFAFGQTPQQEAHGGPTYCAIASLSLLGRLD 231
BLAST of FC873352 vs. ExPASy Swiss-Prot
Match: PGTB2_DICDI (Probable geranylgeranyl transferase type-2 subunit beta OS=Dictyostelium discoideum GN=rabggtb PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 4.102e-18 Identity = 68/196 (34.69%), Postives = 102/196 (52.04%), Query Frame = 1 Query: 175 YQYQEINRITLAHFAISGLCLLGALDRVDKDAVSDWVLSLKAHPSNKADLTNGEFYGFHGSPSSQLHPDDNGVLMHNGSNLASTYCALAILKAVGYNFAN-IDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFI 759 Y E R+ ++ +S L LL +LD++DK+ V W+LS + +NG GF G+ S H L ST A+ IL + Y+ + ID S++ + LQ+ DGSF+ +G E D RF Y A LL+ ++ E+A YIL+CQ++DGGFG PG+ESH G + V +L ++ I Sbjct: 43 YWVTEHIRMNGMYWGLSSLYLLKSLDKLDKNEVIQWLLSCQK--------SNG---GFGGNTSHDDH-------------LLSTLSAVQIL--IQYDALDKIDINSVVDYVVKLQREDGSFVGDQWG-EVDTRFSYAAIMCLSLLKSLDKINCEKAVEYILSCQNFDGGFGSIPGAESHAGQIFTCVGALSILNEI 211
BLAST of FC873352 vs. ExPASy Swiss-Prot
Match: PGTB1_SCHPO (Geranylgeranyl transferase type-1 subunit beta OS=Schizosaccharomyces pombe GN=cwg2 PE=2 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 5.923e-17 Identity = 68/235 (28.94%), Postives = 108/235 (45.96%), Query Frame = 1 Query: 112 QFNRQQHVAFLMMMYESLPHHYQYQEINRITLAHFAISGLCLLGALDRVDKDAVSDWVLSLKAHPSNKADLTNGEFYGFHGSPSSQLHPDDNGVLMHNGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGA--EKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVA--SLRLMGFIEDNVLSKNMSSSIID 804 + R +H+AF P Y+ + R LA F + GL LL AL+ +D D W+ + + K + G Y + + + P + LA T ++ L +G N + ID I + + G F I + ++D+R +Y A I LL D+S D + YI +CQ Y+GGF L P E+H G T+CA+A SL L ++ + N S +++D Sbjct: 2 ELTRAKHIAFFKRHLILFPTPYEEHDCERTVLAFFCLLGLDLLNALNTIDDDDKKSWIEWIYKNYVTKE--SKGIKYSGFQAYRTGIQP----ISFEQEPQLAGTVFSICCLLFLGDNLSRIDRDLIKNFVELCKTSQGHFRSIAVPSCSDQDMRQLYMATTIASLL-DFSLSDPLCSIQYIKSCQRYEGGFSLLPYGEAHAGATFCALASWSLILKMIPNSSLNTSNQSYNLMD 229
BLAST of FC873352 vs. ExPASy Swiss-Prot
Match: GGTB2_CAEEL (Probable geranylgeranyl transferase type-2 subunit beta OS=Caenorhabditis elegans GN=ggtb-1 PE=2 SV=2) HSP 1 Score: 85.1149 bits (209), Expect = 5.014e-16 Identity = 58/199 (29.15%), Postives = 97/199 (48.74%), Query Frame = 1 Query: 169 HHYQYQEINRITLAHFAISGLCLLGALDRVDKDAVSDWVLSLKAHPSNKADLTNGEFYGFHGSPSSQLHPDDNGVLMHNGSNLASTYCALAILKAVGYNFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLMGFIED 765 +HY E R++ ++ ++ + L L+R+ + + ++VL + T+G G+ +P H L+H T CA+ L + + D+ +I ++ LQQ DGSF E D RF C+ A C LL S ++ + A +++ C + DGGFG PGSESH G YC V +L + G +++ Sbjct: 43 YHYIMAEHLRVSGIYWCVNAMDLSKQLERMSTEEIVNYVLGCRN--------TDG---GYGPAPGHDSH------LLH-------TLCAVQTL-IIFNSIEKADADTISEYVKGLQQEDGSFCG-DLSGEVDTRFTLCSLATCHLLGRLSTLNIDSAVRFLMRCYNTDGGFGTRPGSESHSGQIYCCVGALAIAGRLDE 215
BLAST of FC873352 vs. ExPASy Swiss-Prot
Match: FNTB_DICDI (Protein farnesyltransferase subunit beta OS=Dictyostelium discoideum GN=fntB PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.459e-15 Identity = 58/230 (25.22%), Postives = 114/230 (49.57%), Query Frame = 1 Query: 82 EQAASDGSSSQFNRQQHVAFLMMMYESLPHHYQYQEINRITLAHFAISGLCLLGALDRVDK-DAVSDWVLSLKAHPSNKADLTNGEFY----GFHGSPSSQLHPDDNGVLMHNGSNLASTYCALAILKAVGY--NFANIDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLM 750 E+ S + + +++ + FLM E +P +Q + +++ ++ + ++G+ +L +LD + + LS+ + N + N E GF G S H + ST+ A++ L +G ++ ID +++ + ++ +G+F G E D R YCA A+ +L + ++L+CQ+Y+GGFG P +E+HGG T+C+VA+L ++ Sbjct: 45 EKLNSTENGNIIEKKKILNFLMNGIEKIPMSHQGLDSSKVWISFWILNGMDMLDSLDSYPNISSRASKYLSILQNDDNNGNNNNRENNQNGGGFGGGNSHTSH-------------VVSTFAAVSALYVIGTEESYKTIDREAMYKFLMRMKTKEGAFTS-EDGGEYDSRTTYCAIAVASMLNILTAELERGVVDFLLSCQTYEGGFGAYPFNEAHGGYTFCSVAALSIL 260
BLAST of FC873352 vs. ExPASy Swiss-Prot
Match: FNTB_HUMAN (Protein farnesyltransferase subunit beta OS=Homo sapiens GN=FNTB PE=1 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.751e-14 Identity = 67/235 (28.51%), Postives = 108/235 (45.96%), Query Frame = 1 Query: 79 EEQAASDGSSSQFN---------RQQHVAFLMMMYESLPHHYQYQEINRITLAHFAISGLCLLGALDRVDKDAVSDWVLSLKAHPSNKADLTNGEFYGFHGSPSSQLHPDDNGVLMHNGSNLASTYCALAILKAVGYNFAN--IDSKSILTSMRNLQQHDGSFMPIHFGAEKDLRFVYCAAAICFLLEDWSGMDRERAKAYILNCQSYDGGFGLTPGSESHGGGTYCAVASLRLM 750 EE+ SS +FN R++H +L L Y+ + +R L ++ + L LL + + + +D L+ S + GF G P H LA TY A+ L +G A I+ + +L + +L+Q DGSF+ +H G E D+R YCAA++ L + E +I CQ+++GG G PG E+HGG T+C +A+L ++ Sbjct: 52 EEKIQEVFSSYKFNHLVPRLVLQREKHFHYLKRGLRQLTDAYECLDASRPWLCYWILHSLELLD--EPIPQIVATDVCQFLELCQSPEG--------GFGGGPGQYPH-------------LAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGSFL-MHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVIL 262 The following BLAST results are available for this feature:
BLAST of FC873352 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 22
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC873352 ID=FC873352; Name=FC873352; organism=Citrus clementina; type=EST; length=812bpback to top |