FC873353

Overview
NameFC873353
Unique NameFC873353
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length836
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1107 contig Ccv1_Contig1107:2..837. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873353 vs. ExPASy Swiss-Prot
Match: UBR7_HUMAN (Putative E3 ubiquitin-protein ligase UBR7 OS=Homo sapiens GN=UBR7 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.910e-11
Identity = 56/260 (21.54%), Postives = 105/260 (40.38%), Query Frame = 3
Query:   15 YEDFICKACSAVCSFLSTYPQTIWAA-------GLRRNAGC-----------NTNKDKDVLEEIPSAGGSGKLENGICSNGSPREDNAIANTSAESVTGGKGVTGESSKKIFDLVQCMNDGGAHIACLFGDNIVVDGSISLTKPLFLSKNWRATLCRCKKCLSMYEQKRVPYLIDEEDSIAEYERTAXXXXXXXXXXXXGAELTFLNKLGHVEKMEILNGIADMKDEFHNFLQSF-DPSKAITSDDVHQIFENLAKKRKR 737
            +++ +C+AC   CSFL  Y   +          GL RN                ++D  + E++P  G     E  +  N  P   ++ + +  ++V   + +  ES              G  +  L    ++   + +     +   NWR+ LC C+ C+ MY    V +L DE D++  YE                  L+ +N+   V+++E++    D+K E  ++L+ F D    +  +D+ Q FE    K++R
Sbjct:  177 FQEMVCQACMKRCSFLWAYAAQLAVTKISTEDDGLVRNIDGIGDQEVIKPENGEHQDSTLKEDVPEQGKDDVREVKVEQNSEPCAGSS-SESDLQTVFKNESLNAESKS------------GCKLQELKAKQLIKKDTAT-----YWPLNWRSKLCTCQDCMKMYGDLDVLFLTDEYDTVLAYENKGKIAQATDRSDPLMDTLSSMNR---VQQVELICEYNDLKTELKDYLKRFADEGTVVKREDIQQFFEEFQSKKRR 415          
The following BLAST results are available for this feature:
BLAST of FC873353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UBR7_HUMAN3.910e-1121.54Putative E3 ubiquitin-protein ligase UBR7 OS=Homo ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI1BG02FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BG02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873353 ID=FC873353; Name=FC873353; organism=Citrus clementina; type=EST; length=836bp
AAGGAGAGCCAGTGTATGAGGATTTCATATGCAAGGCATGCTCGGCAGTT
TGTTCTTTTCTGAGCACATATCCTCAAACCATATGGGCAGCTGGGTTGCG
ACGAAATGCTGGTTGTAATACTAACAAGGATAAAGATGTATTGGAAGAGA
TCCCTTCAGCTGGTGGTTCTGGAAAGCTTGAAAATGGTATTTGTTCTAAT
GGTTCCCCTAGAGAAGATAATGCAATTGCTAATACTAGTGCTGAATCTGT
GACTGGTGGGAAGGGTGTTACTGGAGAAAGTTCCAAGAAAATTTTTGATT
TAGTTCAATGCATGAATGATGGTGGTGCGCATATTGCTTGTCTTTTTGGA
GATAATATAGTGGTTGATGGCTCTATTTCACTAACTAAACCCCTATTCCT
TTCCAAAAATTGGAGGGCTACTCTCTGTAGATGCAAAAAATGCTTAAGTA
TGTACGAGCAAAAGCGTGTTCCTTATCTTATTGATGAGGAGGACTCAATA
GCAGAGTATGAAAGAACAGCAAAGCAAAAGAGGGAAGAAAAGCTGCAGCA
ACAAGAGGGTGCTGAGTTAACTTTTTTGAACAAACTTGGTCATGTGGAGA
AAATGGAGATTCTGAATGGGATTGCAGACATGAAGGATGAATTTCATAAC
TTCCTGCAATCATTTGACCCATCAAAAGCAATCACATCTGATGATGTTCA
TCAGATTTTTGAGAATCTTGCAAAGAAGCGTAAGCGTGAGTGAAACTCTT
TGAAGGTTTCTTTTTTTTTTTTTTTTTTAACTGCAGTTGTGGTGCCTGCG
TCAACTTAAACCTCATGTGTGGTTGCTTTTGGAACT
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