FC873354

Overview
NameFC873354
Unique NameFC873354
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length600
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10146 contig Ccv1_Contig10146:1..601. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873354 vs. ExPASy Swiss-Prot
Match: DAD1_CITUN (Defender against cell death 1 OS=Citrus unshiu GN=DAD1 PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 3.611e-59
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 3
Query:   18 MARSTGKDAQALFHSLRSAYAATPTTLKIIDLYVGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 362
            MARSTGKDAQALFHSLRSAYAATPTTLKIIDLYVGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG
Sbjct:    1 MARSTGKDAQALFHSLRSAYAATPTTLKIIDLYVGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 115          
BLAST of FC873354 vs. ExPASy Swiss-Prot
Match: DAD1_SOLLC (Defender against cell death 1 OS=Solanum lycopersicum GN=DAD1 PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 6.596e-53
Identity = 106/116 (91.38%), Postives = 111/116 (95.69%), Query Frame = 3
Query:   18 MARSTG-KDAQALFHSLRSAYAATPTTLKIIDLYVGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 362
            MA+S+  KDAQALFHSLRSAYAATPT LKIIDLYV FA+ TALIQVVYMAIVGSFPFNSFLSGVLSC+GTAVLAVCLRIQVNK+NKEFKDLPPERAFADFVLCNLVLHLVIMNFLG
Sbjct:    1 MAKSSATKDAQALFHSLRSAYAATPTNLKIIDLYVIFAISTALIQVVYMAIVGSFPFNSFLSGVLSCIGTAVLAVCLRIQVNKENKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 116          
BLAST of FC873354 vs. ExPASy Swiss-Prot
Match: DAD1_BETVE (Defender against cell death 1 OS=Betula verrucosa GN=DAD1 PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.469e-52
Identity = 104/115 (90.43%), Postives = 109/115 (94.78%), Query Frame = 3
Query:   18 MARSTGKDAQALFHSLRSAYAATPTTLKIIDLYVGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 362
            MARST KDAQAL  SLRSAYAATP+ LKIIDLYV FAVFTALIQVVYMAIVGSFPFN+FLSG+LSC+GTAVLAVCLRIQVNK+NKEFKDL PERAFADFVLCNLVLHLVIMNFLG
Sbjct:    1 MARSTSKDAQALIQSLRSAYAATPSNLKIIDLYVVFAVFTALIQVVYMAIVGSFPFNAFLSGLLSCIGTAVLAVCLRIQVNKENKEFKDLAPERAFADFVLCNLVLHLVIMNFLG 115          
BLAST of FC873354 vs. ExPASy Swiss-Prot
Match: DAD1_ARATH (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Arabidopsis thaliana GN=DAD1 PE=2 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 7.293e-52
Identity = 102/115 (88.70%), Postives = 108/115 (93.91%), Query Frame = 3
Query:   18 MARSTGKDAQALFHSLRSAYAATPTTLKIIDLYVGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 362
            M +ST KDAQ LF SLRSAY+ATPT LKIIDLYV FAVFTALIQVVYMA+VGSFPFNSFLSGVLSC+GTAVLAVCLRIQVNK+NKEFKDL PERAFADFVLCNLVLHLVI+NFLG
Sbjct:    1 MVKSTSKDAQDLFRSLRSAYSATPTNLKIIDLYVVFAVFTALIQVVYMALVGSFPFNSFLSGVLSCIGTAVLAVCLRIQVNKENKEFKDLAPERAFADFVLCNLVLHLVIINFLG 115          
BLAST of FC873354 vs. ExPASy Swiss-Prot
Match: DAD2_ARATH (Defender against cell death 2 OS=Arabidopsis thaliana GN=DAD2 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.244e-51
Identity = 101/115 (87.83%), Postives = 106/115 (92.17%), Query Frame = 3
Query:   18 MARSTGKDAQALFHSLRSAYAATPTTLKIIDLYVGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 362
            M +ST KDAQ LFHSL SAY ATPT LKIIDLYV FAVFTALIQV YMA+VGSFPFNSFLSGVLSC+GTAVLAVCLRIQVNK+NKEFKDL PERAFADFVLCNLVLHLVI+NFLG
Sbjct:    1 MVKSTSKDAQDLFHSLHSAYTATPTNLKIIDLYVCFAVFTALIQVAYMALVGSFPFNSFLSGVLSCIGTAVLAVCLRIQVNKENKEFKDLAPERAFADFVLCNLVLHLVIINFLG 115          
BLAST of FC873354 vs. ExPASy Swiss-Prot
Match: DAD1_MALDO (Defender against cell death 1 OS=Malus domestica GN=DAD1 PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.122e-51
Identity = 101/112 (90.18%), Postives = 107/112 (95.54%), Query Frame = 3
Query:   27 STGKDAQALFHSLRSAYAATPTTLKIIDLYVGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 362
            ST +DA ALF SLRSAY+ATPTTLKIIDLY+GFAV TALIQVVYMAIVGSFPFNSFLSGVLSC+GTAVLAVCLRIQVNK+NKEFKDL PERAFADFVLCNLVLH+VIMNFLG
Sbjct:    8 STAQDAVALFDSLRSAYSATPTTLKIIDLYIGFAVSTALIQVVYMAIVGSFPFNSFLSGVLSCIGTAVLAVCLRIQVNKENKEFKDLAPERAFADFVLCNLVLHMVIMNFLG 119          
BLAST of FC873354 vs. ExPASy Swiss-Prot
Match: DAD1_PEA (Defender against cell death 1 OS=Pisum sativum GN=DAD1 PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 4.424e-49
Identity = 98/112 (87.50%), Postives = 104/112 (92.86%), Query Frame = 3
Query:   27 STGKDAQALFHSLRSAYAATPTTLKIIDLYVGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 362
            ST KDAQ LFH++ SAY+ATPT LKIIDLYV FAVFTAL+Q VYMA+VG FPFNSFLSGVLSCVGTAVLAVCLRIQVNK+NKEFKDL PERAFADFVLCNLVLHLVIMNFLG
Sbjct:    6 STTKDAQDLFHAIWSAYSATPTNLKIIDLYVVFAVFTALLQDVYMALVGPFPFNSFLSGVLSCVGTAVLAVCLRIQVNKENKEFKDLGPERAFADFVLCNLVLHLVIMNFLG 117          
BLAST of FC873354 vs. ExPASy Swiss-Prot
Match: DAD1_PICMA (Defender against cell death 1 OS=Picea mariana GN=DAD1 PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 9.857e-49
Identity = 95/115 (82.61%), Postives = 105/115 (91.30%), Query Frame = 3
Query:   18 MARSTGKDAQALFHSLRSAYAATPTTLKIIDLYVGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 362
            M  ST K+A AL  SLRSAY+ATPT LKIIDLYV +A+ TA++QVVYMAIVGSFPFN+FLSGVLSC GTAVLAVCLR+QVNK+N+EFKDLPPERAFADFVLCNLVLHLVIMNFLG
Sbjct:    1 MGTSTAKEAHALIASLRSAYSATPTKLKIIDLYVVYAILTAVVQVVYMAIVGSFPFNAFLSGVLSCTGTAVLAVCLRMQVNKENREFKDLPPERAFADFVLCNLVLHLVIMNFLG 115          
BLAST of FC873354 vs. ExPASy Swiss-Prot
Match: DAD1_ORYSJ (Defender against cell death 1 OS=Oryza sativa subsp. japonica GN=DAD1 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.681e-48
Identity = 100/115 (86.96%), Postives = 103/115 (89.57%), Query Frame = 3
Query:   18 MARSTGKDAQALFHSLRSAYAATPTTLKIIDLYVGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 362
            M R+T  DA+ L  SL  AYAATPT LKIIDLYV FAV TALIQVVYM IVGSFPFNSFLSGVLSC+GTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG
Sbjct:    1 MPRATS-DAKLLIQSLGKAYAATPTNLKIIDLYVVFAVATALIQVVYMGIVGSFPFNSFLSGVLSCIGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 114          
BLAST of FC873354 vs. ExPASy Swiss-Prot
Match: DAD1_ORYSI (Defender against cell death 1 OS=Oryza sativa subsp. indica GN=DAD1 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.681e-48
Identity = 100/115 (86.96%), Postives = 103/115 (89.57%), Query Frame = 3
Query:   18 MARSTGKDAQALFHSLRSAYAATPTTLKIIDLYVGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 362
            M R+T  DA+ L  SL  AYAATPT LKIIDLYV FAV TALIQVVYM IVGSFPFNSFLSGVLSC+GTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG
Sbjct:    1 MPRATS-DAKLLIQSLGKAYAATPTNLKIIDLYVVFAVATALIQVVYMGIVGSFPFNSFLSGVLSCIGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 114          
The following BLAST results are available for this feature:
BLAST of FC873354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
DAD1_CITUN3.611e-59100.00Defender against cell death 1 OS=Citrus unshiu GN=... [more]
DAD1_SOLLC6.596e-5391.38Defender against cell death 1 OS=Solanum lycopersi... [more]
DAD1_BETVE1.469e-5290.43Defender against cell death 1 OS=Betula verrucosa ... [more]
DAD1_ARATH7.293e-5288.70Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
DAD2_ARATH1.244e-5187.83Defender against cell death 2 OS=Arabidopsis thali... [more]
DAD1_MALDO2.122e-5190.18Defender against cell death 1 OS=Malus domestica G... [more]
DAD1_PEA4.424e-4987.50Defender against cell death 1 OS=Pisum sativum GN=... [more]
DAD1_PICMA9.857e-4982.61Defender against cell death 1 OS=Picea mariana GN=... [more]
DAD1_ORYSJ1.681e-4886.96Defender against cell death 1 OS=Oryza sativa subs... [more]
DAD1_ORYSI1.681e-4886.96Defender against cell death 1 OS=Oryza sativa subs... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BG03FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BG03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873354 ID=FC873354; Name=FC873354; organism=Citrus clementina; type=EST; length=600bp
CAGATTACAGAGAGGAAATGGCGAGATCGACCGGCAAAGACGCTCAAGCC
CTTTTCCATTCCCTTCGCTCTGCTTATGCTGCCACTCCCACGACTCTTAA
GATCATCGATCTGTATGTGGGTTTCGCGGTTTTTACTGCCTTAATTCAGG
TAGTTTACATGGCTATTGTTGGATCCTTCCCATTCAACTCTTTTCTTTCA
GGAGTACTTTCTTGTGTTGGGACGGCAGTCCTTGCTGTTTGTCTACGTAT
TCAAGTGAACAAGGACAACAAGGAATTTAAGGACCTACCACCAGAGCGAG
CTTTTGCAGACTTTGTTCTCTGCAATTTGGTGCTGCATTTGGTGATCATG
AATTTCCTTGGATAAACCTTGACCCTGCGTCAACTTAAAATACAATTTTT
CTTGGTCGATGACAGTGTGACTAGCTGTAAAAGTTAGTTACGACATTAAT
GCGGATATTTTTCTTAGGATGTGAACTTACTATAAATGAAGATGTGGACC
ATTTTTGGATCCTTTTAGTTCTATATTTACNAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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