FC873359

Overview
NameFC873359
Unique NameFC873359
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length809
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10336 contig Ccv1_Contig10336:347..1155. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873359 vs. ExPASy Swiss-Prot
Match: YOCS_BACSU (Uncharacterized sodium-dependent transporter yocS OS=Bacillus subtilis GN=yocS PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.469e-39
Identity = 87/202 (43.07%), Postives = 117/202 (57.92%), Query Frame = 3
Query:  201 MSQYEKIIEILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGVGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLAISTFQXXXXXXXXXXLANEFFPKFTSKIISVTPLIGVI 806
            M    KI       F +WVI+  ++G   PS  TW+ + + TI LG +M  MGLTL  +DF+  +R PW V +G +AQY I P++ F +A  L L A +A G+ILV CCPGG ASNV T+++KGN ALSV +TT ST+ A V+TPLL  L A + +PV    L IS  Q          +   FF K  +K +   PL+ VI
Sbjct:    1 MDIIRKISHFAGQTFGIWVIVFAVLGFSFPSLFTWISSYI-TIFLGIIMFGMGLTLQADDFKELVRKPWQVIIGVIAQYTIMPLVAFGLAFGLHLPAEIAVGVILVGCCPGGTASNVMTFLAKGNTALSVAVTTISTLLAPVVTPLLIMLFAKEWLPVSPGSLFISILQAVLFPIIAGLIVKMFFRKQVAKAVHALPLVSVI 201          
BLAST of FC873359 vs. ExPASy Swiss-Prot
Match: NTCP2_RABIT (Ileal sodium/bile acid cotransporter OS=Oryctolagus cuniculus GN=SLC10A2 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.829e-18
Identity = 56/171 (32.75%), Postives = 87/171 (50.88%), Query Frame = 3
Query:  318 LFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGVGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPL----LTKLLAGQ---LVPVDAAGLAISTFQXXXXXXXXXXLANEFFPKFTSKIISVTPLIGVIL 809
            + TI L  +M SMG  +  + F   +R PW + +GFL Q+ I P+ GFV+A+   +    A  ++++ CCPGG ASN+  Y   G++ LSV MTTCST+ A+ M PL     TK+       ++P D  G ++                N  +P+    I+ V  + G +L
Sbjct:   38 VLTILLALVMFSMGCNVEIKKFLGHIRRPWGIFIGFLCQFGIMPLTGFVLAVAFGIMPIQAVVVLIMGCCPGGTASNILAYWVDGDMDLSVSMTTCSTLLALGMMPLCLYVYTKMWVDSGTIVIPYDNIGTSLVAL---VVPVSIGMFVNHKWPQKAKIILKVGSIAGAVL 205          
BLAST of FC873359 vs. ExPASy Swiss-Prot
Match: NTCP2_CRIGR (Ileal sodium/bile acid cotransporter OS=Cricetulus griseus GN=SLC10A2 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.120e-18
Identity = 57/171 (33.33%), Postives = 86/171 (50.29%), Query Frame = 3
Query:  318 LFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGVGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPL----LTKLLAGQ---LVPVDAAGLAISTFQXXXXXXXXXXLANEFFPKFTSKIISVTPLIGVIL 809
            + TI L  +M SMG  +    F   LR PW + VGFL Q+ I P+ GFV+++   +    A  +++  CCPGG ASN+  Y   G++ LSV MTTCST+ A+ M PL     TK+       ++P D+ G ++                N  +P+    I+ +  + G IL
Sbjct:   37 VLTILLALVMFSMGCNVELHKFLGHLRRPWGIVVGFLCQFGIMPLTGFVLSVAFGILPVQAVVVLIQGCCPGGTASNILAYWVDGDMDLSVSMTTCSTLLALGMMPLCLFIYTKMWVDSGTIVIPYDSIGTSLVAL---VIPVSIGMYVNHKWPQKAKIILKIGSIAGAIL 204          
BLAST of FC873359 vs. ExPASy Swiss-Prot
Match: NTCP2_MOUSE (Ileal sodium/bile acid cotransporter OS=Mus musculus GN=Slc10a2 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 5.322e-18
Identity = 54/171 (31.58%), Postives = 88/171 (51.46%), Query Frame = 3
Query:  318 LFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGVGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPL----LTKLLAGQ---LVPVDAAGLAISTFQXXXXXXXXXXLANEFFPKFTSKIISVTPLIGVIL 809
            + TI L  +M SMG  +    F   ++ PW + VGFL Q+ I P+ GF++++   +    A  ++++ CCPGG  SN+  Y   G++ LSV MTTCST+ A+ M PL     TK+       ++P D+ G+++                N  +P+    I+ +  + GVIL
Sbjct:   37 VLTILLAMVMFSMGCNVEVHKFLGHIKRPWGIFVGFLCQFGIMPLTGFILSVASGILPVQAVVVLIMGCCPGGTGSNILAYWIDGDMDLSVSMTTCSTLLALGMMPLCLFVYTKMWVDSGTIVIPYDSIGISLVAL---VIPVSFGMFVNHKWPQKAKIILKIGSITGVIL 204          
BLAST of FC873359 vs. ExPASy Swiss-Prot
Match: NTCP2_HUMAN (Ileal sodium/bile acid cotransporter OS=Homo sapiens GN=SLC10A2 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.322e-18
Identity = 54/171 (31.58%), Postives = 87/171 (50.88%), Query Frame = 3
Query:  318 LFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGVGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPL----LTKLLAGQ---LVPVDAAGLAISTFQXXXXXXXXXXLANEFFPKFTSKIISVTPLIGVIL 809
            + TI L  +M SMG  +  + F   ++ PW + VGFL Q+ I P+ GF++++   +    A  ++++ CCPGG ASN+  Y   G++ LSV MTTCST+ A+ M PL     TK+       ++P D  G ++                N  +P+    I+ +  + G IL
Sbjct:   37 VLTILLALVMFSMGCNVEIKKFLGHIKRPWGICVGFLCQFGIMPLTGFILSVAFDILPLQAVVVLIIGCCPGGTASNILAYWVDGDMDLSVSMTTCSTLLALGMMPLCLLIYTKMWVDSGSIVIPYDNIGTSLVAL---VVPVSIGMFVNHKWPQKAKIILKIGSIAGAIL 204          
BLAST of FC873359 vs. ExPASy Swiss-Prot
Match: NTCP2_RAT (Ileal sodium/bile acid cotransporter OS=Rattus norvegicus GN=Slc10a2 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.186e-17
Identity = 53/171 (30.99%), Postives = 87/171 (50.88%), Query Frame = 3
Query:  318 LFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGVGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPL----LTKLLAGQ---LVPVDAAGLAISTFQXXXXXXXXXXLANEFFPKFTSKIISVTPLIGVIL 809
            + TI L  +M SMG  +    F   ++ PW + VGFL Q+ I P+ GF++++   +    A  ++++ CCPGG  SN+  Y   G++ LSV MTTCST+ A+ M PL     TK+       ++P D+ G+++                N  +P+    I+ +  + G IL
Sbjct:   37 VLTILLAMVMFSMGCNVEINKFLGHIKRPWGIFVGFLCQFGIMPLTGFILSVASGILPVQAVVVLIMGCCPGGTGSNILAYWIDGDMDLSVSMTTCSTLLALGMMPLCLFIYTKMWVDSGTIVIPYDSIGISLVAL---VIPVSIGMFVNHKWPQKAKIILKIGSIAGAIL 204          
BLAST of FC873359 vs. ExPASy Swiss-Prot
Match: SOAT_HUMAN (Solute carrier family 10 member 6 OS=Homo sapiens GN=SLC10A6 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.004e-16
Identity = 39/109 (35.78%), Postives = 65/109 (59.63%), Query Frame = 3
Query:  312 TDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGVGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPL 638
            T + T+ +G LM S+G ++        +R PW + VG L Q+ + P   +++A++  L    A  ++++ CCPGG  SN+ T+   G++ LS+ MTTCST+ A+ M PL
Sbjct:   35 TVVSTVMMGLLMFSLGCSVEIRKLWSHIRRPWGIAVGLLCQFGLMPFTAYLLAISFSLKPVQAIAVLIMGCCPGGTISNIFTFWVDGDMDLSISMTTCSTVAALGMMPL 143          
BLAST of FC873359 vs. ExPASy Swiss-Prot
Match: SOAT_BOVIN (Solute carrier family 10 member 6 OS=Bos taurus GN=SLC10A6 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 8.497e-16
Identity = 36/102 (35.29%), Postives = 63/102 (61.76%), Query Frame = 3
Query:  333 LGFLMLSMGLTLTFEDFRRCLRNPWTVGVGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPL 638
            +G LM S+G ++  +     +R PW + VG L Q+ + P++ +++ ++  L    A  ++++ CCPGG  SN+ T+   G++ LS+ MTTCST+ A+ M PL
Sbjct:   42 IGLLMFSLGCSVEVQKLWGHIRRPWGIAVGMLCQFGLMPLIAYLLIISFSLKPLQAIAVLIMGCCPGGTVSNIFTFWVDGDMDLSISMTTCSTMAALGMMPL 143          
BLAST of FC873359 vs. ExPASy Swiss-Prot
Match: SOAT_MOUSE (Solute carrier family 10 member 6 OS=Mus musculus GN=Slc10a6 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.229e-15
Identity = 52/186 (27.96%), Postives = 91/186 (48.92%), Query Frame = 3
Query:  273 IGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGVGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLT-------KLLAGQLVPVDAAGLAISTFQXXXXXXXXXXLANEFFPKFTSKIISVTPLIGVIL 809
            +G+   + +  L T L  + +G +M S G ++  +     LR PW + VG L+Q+ + P+  +++A+   L    A  ++++  CPGG  SNV T+   G++ LS+ MTTCST+ A+ M PL          L    ++P  + G+   T              N  +PK  + I+ V  ++G +L
Sbjct:   22 VGMEGHANLKLLFTVLSAVMVGLVMFSFGCSVESQKLWLHLRRPWGIAVGLLSQFGLMPLTAYLLAIGFGLKPFQAIAVLMMGSCPGGTISNVLTFWVDGDMDLSISMTTCSTVAALGMMPLCLYIYTRSWTLTQNLVIPYQSIGI---TLVSLVVPVASGVYVNYRWPKQATVILKVGAILGGML 204          
BLAST of FC873359 vs. ExPASy Swiss-Prot
Match: SOAT_RAT (Solute carrier family 10 member 6 OS=Rattus norvegicus GN=Slc10a6 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.602e-14
Identity = 40/122 (32.79%), Postives = 68/122 (55.74%), Query Frame = 3
Query:  273 IGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGVGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPL 638
            +G+    ++  + T L  + +G +M S G ++        LR PW + VG L Q+ + P+  +++A+   L    A  ++++  CPGG  SNV T+   G++ LS+ MTTCST+ A+ M PL
Sbjct:   22 VGMEGQGSLKLVFTVLSAVMVGLVMFSFGCSVESRKLWLHLRRPWGIAVGLLCQFGLMPLTAYLLAIGFGLKPFQAIAVLIMGSCPGGTVSNVLTFWVDGDMDLSISMTTCSTVAALGMMPL 143          
The following BLAST results are available for this feature:
BLAST of FC873359 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
YOCS_BACSU5.469e-3943.07Uncharacterized sodium-dependent transporter yocS ... [more]
NTCP2_RABIT1.829e-1832.75Ileal sodium/bile acid cotransporter OS=Oryctolagu... [more]
NTCP2_CRIGR3.120e-1833.33Ileal sodium/bile acid cotransporter OS=Cricetulus... [more]
NTCP2_MOUSE5.322e-1831.58Ileal sodium/bile acid cotransporter OS=Mus muscul... [more]
NTCP2_HUMAN5.322e-1831.58Ileal sodium/bile acid cotransporter OS=Homo sapie... [more]
NTCP2_RAT1.186e-1730.99Ileal sodium/bile acid cotransporter OS=Rattus nor... [more]
SOAT_HUMAN1.004e-1635.78Solute carrier family 10 member 6 OS=Homo sapiens ... [more]
SOAT_BOVIN8.497e-1635.29Solute carrier family 10 member 6 OS=Bos taurus GN... [more]
SOAT_MOUSE3.229e-1527.96Solute carrier family 10 member 6 OS=Mus musculus ... [more]
SOAT_RAT1.602e-1432.79Solute carrier family 10 member 6 OS=Rattus norveg... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BG08FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BG08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873359 ID=FC873359; Name=FC873359; organism=Citrus clementina; type=EST; length=809bp
CGCAAGCTCATCTGGATCTAAGAGGTGGATTATCAGCGATTGATCATGGA
AAAAGTTTGGCAATCGAAAGCAAGCCCCAAAATCACATTGTTGCTCTTGC
AGCTCCCTACTCAATCATTCAAAATTCAAGGTGCTCCCAAGTTTTGTGCA
AGGCAGCAGCAAATGTATCTGGAGATGTTCCAAGTAAATCTCCTGGTGGA
ATGAGCCAGTACGAGAAAATAATTGAAATTTTGACAACACTTTTTCCTGT
GTGGGTCATACTGGGCACCATTATTGGCATCTATAAGCCGAGTGCGGTAA
CATGGTTGGAGACAGACCTTTTCACTATTGGCTTGGGTTTTCTTATGCTT
TCAATGGGATTGACTCTGACCTTTGAAGATTTCAGAAGATGTTTGCGGAA
TCCATGGACTGTCGGTGTTGGATTTCTTGCTCAATATTTGATCAAACCTA
TGTTAGGCTTTGTAATTGCAATGACCCTAAAACTTTCCGCACCCCTTGCT
ACTGGTCTTATTTTGGTCTCATGCTGTCCTGGTGGTCAGGCTTCAAATGT
TGCTACCTATATATCTAAAGGAAATGTAGCACTTTCTGTTCTTATGACAA
CGTGTTCGACTATTGGAGCTATAGTCATGACTCCACTTCTAACTAAGCTT
CTAGCTGGTCAGCTTGTTCCTGTAGATGCTGCAGGGCTGGCTATCAGCAC
TTTTCAAGTCGTGTTAGTACCAACAGTTGTTGGGGTGTTGGCGAATGAAT
TCTTCCCAAAATTCACTTCAAAGATCATCTCCGTGACACCCTTAATTGGT
GTTATTCTT
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