FC873360

Overview
NameFC873360
Unique NameFC873360
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length857
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC873360_ssr1 microsatellite FC873360_ssr1:1..10. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10163 contig Ccv1_Contig10163:28..886. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC873360 vs. ExPASy Swiss-Prot
Match: Y3721_ARATH (Uncharacterized protein At3g27210 OS=Arabidopsis thaliana GN=Y-2 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.158e-24
Identity = 83/231 (35.93%), Postives = 116/231 (50.22%), Query Frame = 2 
Query:  152 DSAAAMKMDLSSPFGSNSEKLAIPPS----PVKQAATVNAFR-GLGSKEETFFDSQPWLDSDCEDDFYSVNGDFTPSRGNTPVHHNFAGAPQVNSTSLPDKTPG-SISEPSPTGKKPKLAELFRQISKEGSEDQHVDEQNTQGSQNMANGKTEIRTTILDVLPSANGTPYVSGVNSVCSSERTPNGDSMMEDKPMRS---AQCCLPSFVSCRNS-TDRKKKMS---PVIAV 805
            D+ + +   +   F S  +  +IP +    PVK   + ++ +   GSK+ETFFDSQPWL SD +DDF+SVNGDFTPS GNTP        P+ ++    +K P    S P+P  ++ KL ELFR   +E        E+   GS                   SA  TPY+SG NS     R  N  ++ +++  +S      CLP F SC  S  +R+KKMS   PV+AV
Sbjct:   34 DNVSILSPSVKKSFESPRKSTSIPANNNLTPVKSRWSFSSSKKSFGSKDETFFDSQPWLQSDSDDDFHSVNGDFTPSLGNTPKSSFSDRPPRFHNLIFHEKKPSRGSSSPAPLPRRKKLGELFRDSIRE--------EREESGSS------------------SAISTPYLSGANS-----REFNDTAIEKEEKKKSNWHHHRCLPGFSSCGGSFMERRKKMSSETPVVAV 233
The following BLAST results are available for this feature:
BLAST of FC873360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y3721_ARATH4.158e-2435.93Uncharacterized protein At3g27210 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI1BG09FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BG09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873360 ID=FC873360; Name=FC873360; organism=Citrus clementina; type=EST; length=857bp
CTCTCTCTCTTCTGGTGTCTCTACAGAAGAAGATTTTCTGATGCTAAGAG
CGTCGCTGGCTTCTTAGTTTTATTATACCTTTTGTCAATTTAAATAAAGA
GAATTTAGAGACATGGGTTCGTGCGTATCATCAGCACACAAGAGAACAGC
AGACTCAGCCGCTGCCATGAAAATGGACTTATCATCACCATTTGGGTCCA
ATAGTGAGAAGCTTGCGATTCCACCTTCCCCCGTGAAACAAGCGGCGACA
GTCAACGCGTTTAGAGGCCTTGGTAGTAAAGAGGAAACCTTTTTCGATTC
TCAACCATGGCTAGATTCTGACTGCGAAGATGATTTTTACAGTGTCAATG
GAGATTTTACCCCATCTCGTGGCAATACTCCAGTCCATCACAACTTTGCA
GGGGCTCCTCAAGTCAACAGCACTTCTCTTCCGGACAAAACTCCCGGTTC
CATTTCTGAACCATCCCCAACAGGAAAGAAACCGAAACTAGCTGAACTGT
TCCGGCAAATTTCTAAAGAAGGTTCAGAAGACCAACATGTTGATGAACAA
AACACCCAAGGTAGCCAAAACATGGCCAATGGGAAGACAGAAATTAGGAC
AACTATACTTGATGTACTTCCATCAGCAAATGGTACCCCATATGTTTCTG
GAGTTAACTCTGTGTGTAGTAGTGAAAGGACTCCTAATGGAGATTCTATG
ATGGAGGACAAGCCAATGAGATCGGCACAATGTTGCCTTCCAAGCTTTGT
ATCATGTCGTAATTCTACTGACAGGAAGAAGAAGATGAGTCCTGTCATAG
CTGTAAATGGTAACCTTATATTTTGGCACACAGGACTATGTAGATGGAAG
AGAGTGA
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