FC873364

Overview
NameFC873364
Unique NameFC873364
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length786
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC873364_ssr146 microsatellite FC873364_ssr146:146..163. BLAST: Citrus ESTs to Prunus persica proteins V1
FC873364_ssr269 microsatellite FC873364_ssr269:269..280. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14485 contig Ccv1_Contig14485:56..841. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873364 vs. ExPASy Swiss-Prot
Match: IF2B_MALDO (Eukaryotic translation initiation factor 2 subunit beta OS=Malus domestica PE=2 SV=2)

HSP 1 Score: 353.599 bits (906), Expect = 7.119e-97
Identity = 178/237 (75.11%), Postives = 194/237 (81.86%), Query Frame = 2
Query:   77 MTDENQVDVKDEV-AELAPFDPTXXXXXXXVVIQDPSDDSVDKLAEITETLSVSEGLESTFTGLXXXXXXPVESSLLNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKEN 784
            M D+NQ +VKDEV A++APFDPT       VVIQD +DDSV KLAE  E  + SEG ESTF GL      P+E+S+LN+E GDA +DL+   GED+E +G       YPWEGSDRDY YEELL RVF ILRENNP+LAGDRRRTVMRPPQVLREGTKK VFVNFMDLCKTMHRQPDHVM FLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGC+SPDTILSKEN
Sbjct:    1 MADDNQNEVKDEVVADIAPFDPTKKKKKKEVVIQDTTDDSVGKLAEKAEACTASEGQESTFAGLKKKKKKPIETSILNEESGDAVEDLNERTGEDEEGEGIVLETPSYPWEGSDRDYTYEELLDRVFTILRENNPDLAGDRRRTVMRPPQVLREGTKKAVFVNFMDLCKTMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCQSPDTILSKEN 237          
BLAST of FC873364 vs. ExPASy Swiss-Prot
Match: IF2B_WHEAT (Eukaryotic translation initiation factor 2 subunit beta OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 333.183 bits (853), Expect = 9.957e-91
Identity = 171/238 (71.85%), Postives = 191/238 (80.25%), Query Frame = 2
Query:   77 MTDENQVDVKDEVAELAPFDPTXXXXXXXVVIQDPSDDSVDKLAEITETLSVSEGLESTFTGLXXXXXXPVESSLLNDEIGDAGDDLDGHVGEDDEADGS--GGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKEN 784
            M DE Q++ K+E  E+APFDPT       VVIQDP+D+ VDKLAE TE LSV+E  E++F GL       VE      E GD  D LD  VGED++ +G   GG  Q YPWEG+DRDY+Y+ELLGRVFNILRENNP+LAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQP+HVM FLLAE+GTSGSLDGQQRLV+KGRFAPKNFE ILRRY+NEYVIC GCKSPDTILSKEN
Sbjct:    1 MADEEQMERKEEATEIAPFDPTKKKKKKKVVIQDPADE-VDKLAEKTEGLSVTESGEASFVGLKKKKKKLVELDPSLVEAGDGEDTLDDQVGEDEQGEGIVLGGATQ-YPWEGTDRDYKYDELLGRVFNILRENNPDLAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPEHVMMFLLAEMGTSGSLDGQQRLVIKGRFAPKNFEAILRRYINEYVICHGCKSPDTILSKEN 236          
BLAST of FC873364 vs. ExPASy Swiss-Prot
Match: IF2B_ARATH (Eukaryotic translation initiation factor 2 subunit beta OS=Arabidopsis thaliana GN=EMB1401 PE=2 SV=3)

HSP 1 Score: 328.561 bits (841), Expect = 2.452e-89
Identity = 165/237 (69.62%), Postives = 192/237 (81.01%), Query Frame = 2
Query:   77 MTDENQVDVKDEVAELAPFDPTXXXXXXXVVIQDPSDDSVDKL-AEITETLSVSEGLESTFTGLXXXXXXPVESSLLNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKEN 784
            M DE   ++++E  +LAPFDP+       VVIQ+P +D  +    E +++L V++GLES+FTG+      P ESSLLN+E  DAG+DLD    ++ E +     +QRYPWEGS+RDY Y+ELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVM +LLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRY+ +YVICLGCKSPDTILSKEN
Sbjct:    1 MADEIN-EIREEQEQLAPFDPSKKKKKKKVVIQEPVEDLAESSQTEKSDSLPVNDGLESSFTGMKKKKKKPTESSLLNNESVDAGEDLDEIANDEQEGEEGIVLQQRYPWEGSERDYIYDELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMQYLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYITDYVICLGCKSPDTILSKEN 236          
BLAST of FC873364 vs. ExPASy Swiss-Prot
Match: IF2B_RABIT (Eukaryotic translation initiation factor 2 subunit 2 OS=Oryctolagus cuniculus GN=EIF2S2 PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.173e-47
Identity = 93/160 (58.13%), Postives = 117/160 (73.12%), Query Frame = 2
Query:  308 DEIGDAGDDLDGHVGEDDEADGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL-AGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKE 781
            DEI +  + L+    + D  DG     Q  P W GS+RDY YEELL RVFNI+RE NP++ AG++R+ VM+PPQV+R GTKKT FVNF D+CK +HRQP H++ FLLAELGTSGS+DG  +LV+KGRF  K  E +LRRY+ EYV C  C+SPDTIL K+
Sbjct:  137 DEILEKDEALEDEDSKKD--DGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKD 294          
BLAST of FC873364 vs. ExPASy Swiss-Prot
Match: IF2B_PONAB (Eukaryotic translation initiation factor 2 subunit 2 OS=Pongo abelii GN=EIF2S2 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.173e-47
Identity = 93/160 (58.13%), Postives = 117/160 (73.12%), Query Frame = 2
Query:  308 DEIGDAGDDLDGHVGEDDEADGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL-AGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKE 781
            DEI +  + L+    + D  DG     Q  P W GS+RDY YEELL RVFNI+RE NP++ AG++R+ VM+PPQV+R GTKKT FVNF D+CK +HRQP H++ FLLAELGTSGS+DG  +LV+KGRF  K  E +LRRY+ EYV C  C+SPDTIL K+
Sbjct:  137 DEILEKDEALEDEDNKKD--DGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKD 294          
BLAST of FC873364 vs. ExPASy Swiss-Prot
Match: IF2B_HUMAN (Eukaryotic translation initiation factor 2 subunit 2 OS=Homo sapiens GN=EIF2S2 PE=1 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 5.173e-47
Identity = 93/160 (58.13%), Postives = 117/160 (73.12%), Query Frame = 2
Query:  308 DEIGDAGDDLDGHVGEDDEADGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL-AGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKE 781
            DEI +  + L+    + D  DG     Q  P W GS+RDY YEELL RVFNI+RE NP++ AG++R+ VM+PPQV+R GTKKT FVNF D+CK +HRQP H++ FLLAELGTSGS+DG  +LV+KGRF  K  E +LRRY+ EYV C  C+SPDTIL K+
Sbjct:  137 DEILEKDEALEDEDNKKD--DGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKD 294          
BLAST of FC873364 vs. ExPASy Swiss-Prot
Match: IF2B_MOUSE (Eukaryotic translation initiation factor 2 subunit 2 OS=Mus musculus GN=Eif2s2 PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.757e-47
Identity = 91/159 (57.23%), Postives = 116/159 (72.96%), Query Frame = 2
Query:  308 DEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPEL-AGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKE 781
            DEI +  + L+    ED + D       +  W GS+RDY YEELL RVFNI+RE NP++ AG++R+ VM+PPQV+R GTKKT FVNF D+CK +HRQP H++ FLLAELGTSGS+DG  +LV+KGRF  K  E +LRRY+ EYV C  C+SPDTIL K+
Sbjct:  137 DEILEKDEALED---EDSKKDDGISFSSQTAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKD 292          
BLAST of FC873364 vs. ExPASy Swiss-Prot
Match: IF2B_BOVIN (Eukaryotic translation initiation factor 2 subunit 2 OS=Bos taurus GN=EIF2S2 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.757e-47
Identity = 92/160 (57.50%), Postives = 117/160 (73.12%), Query Frame = 2
Query:  308 DEIGDAGDDLDGHVGEDDEADGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL-AGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKE 781
            DE+ +  + L+    + D  DG     Q  P W GS+RDY YEELL RVFNI+RE NP++ AG++R+ VM+PPQV+R GTKKT FVNF D+CK +HRQP H++ FLLAELGTSGS+DG  +LV+KGRF  K  E +LRRY+ EYV C  C+SPDTIL K+
Sbjct:  137 DEVLEKDEALEDEDSKKD--DGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKD 294          
BLAST of FC873364 vs. ExPASy Swiss-Prot
Match: IF2BL_HUMAN (Eukaryotic translation initiation factor 2 subunit 2-like protein OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.966e-46
Identity = 88/145 (60.69%), Postives = 111/145 (76.55%), Query Frame = 2
Query:  353 EDDEADGSGGPRQRYP-WEGSDRDYEYEELLGRVFNILRENNPEL-AGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKE 781
            ++ + DG     Q  P W GS+RDY YEELL RVFNI+RE NP++ AG++R+ VM+PPQV+R GTKKT FVNF D+CK +HRQP H++ FLLAELGTSGS+DG  +LV+KGRF  K  E +LRRY+ EYV C  C+SPDTIL K+
Sbjct:  144 DNKKDDGISFSNQTGPAWAGSERDYTYEELLNRVFNIMREKNPDMVAGEKRKFVMKPPQVVRVGTKKTSFVNFTDICKLLHRQPKHLLAFLLAELGTSGSIDGNNQLVIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKD 288          
BLAST of FC873364 vs. ExPASy Swiss-Prot
Match: IF2B_DROME (Eukaryotic translation initiation factor 2 subunit 2 OS=Drosophila melanogaster GN=eIF-2beta PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 8.259e-45
Identity = 89/161 (55.28%), Postives = 113/161 (70.19%), Query Frame = 2
Query:  302 LNDEIGDAGDDLDGHVGEDDEADGSGGPRQRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRR-RTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMTFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICLGCKSPDTILSKE 781
            L++   D  DD      E+DE + S        W GSDRDY Y+ELL RVF I+ + NP++A  R+ + VMRPPQVLR GTKKT F NFMD+ KT+HR P H++ FLLAELGTSGS+DG Q+L++KGRF PK  E +LRRY+ EYV C  C+SP+TIL K+
Sbjct:  120 LDELFADQADDDKSEDKENDEDNSS-------TWFGSDRDYTYDELLKRVFEIILDKNPDMAAGRKPKFVMRPPQVLRVGTKKTSFANFMDIAKTLHRLPKHLLDFLLAELGTSGSMDGNQQLIIKGRFQPKQIENVLRRYIKEYVTCHTCRSPETILQKD 273          
The following BLAST results are available for this feature:
BLAST of FC873364 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
IF2B_MALDO7.119e-9775.11Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_WHEAT9.957e-9171.85Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_ARATH2.452e-8969.62Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_RABIT5.173e-4758.13Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_PONAB5.173e-4758.13Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_HUMAN5.173e-4758.13Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_MOUSE6.757e-4757.23Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_BOVIN6.757e-4757.50Eukaryotic translation initiation factor 2 subunit... [more]
IF2BL_HUMAN1.966e-4660.69Eukaryotic translation initiation factor 2 subunit... [more]
IF2B_DROME8.259e-4555.28Eukaryotic translation initiation factor 2 subunit... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AD02FM1 AbsDev Citrus clementina cDNA clone KN0AAI3AD02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873364 ID=FC873364; Name=FC873364; organism=Citrus clementina; type=EST; length=786bp
TTCGAATTCATTTCTTTAGCCGCAGGCCGTCAGCGACGGAAGAGAAGATC
TCAGTTTCGATTCTAGAAACTCGACTATGACGGACGAAAATCAAGTAGAT
GTGAAGGACGAGGTGGCAGAACTTGCCCCCTTCGATCCTACTAAAAAGAA
GAAGAAGAAGAAGGTTGTAATACAGGATCCTTCAGATGATTCTGTGGACA
AACTGGCCGAGATAACTGAAACTTTATCAGTCTCTGAGGGGCTTGAAAGT
ACTTTTACTGGTTTGAAAAAGAAGAAGAAGAAACCAGTAGAAAGCAGTCT
ATTGAACGATGAGATTGGGGATGCAGGAGACGATTTGGATGGTCACGTGG
GTGAGGATGATGAAGCTGATGGAAGTGGTGGTCCACGGCAGCGTTATCCA
TGGGAAGGGAGTGATCGCGACTATGAATATGAGGAGCTTCTTGGTAGGGT
CTTTAACATCCTCCGAGAGAATAATCCTGAACTTGCAGGAGATAGGCGTA
GAACAGTCATGAGACCTCCACAAGTTCTTCGTGAAGGAACAAAGAAAACT
GTTTTTGTCAATTTCATGGATCTCTGCAAGACCATGCATCGGCAGCCAGA
TCATGTCATGACATTTTTGCTTGCTGAACTGGGGACAAGTGGGTCACTGG
ACGGACAGCAAAGACTGGTCGTGAAGGGCCGATTTGCTCCCAAGAATTTT
GAAGGGATACTGCGTCGATATGTCAATGAATATGTCATCTGTCTTGGGTG
CAAAAGTCCTGACACGATACTTTCAAAGGAAAACCG
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