FC873368

Overview
NameFC873368
Unique NameFC873368
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length494
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC873368_ssr126 microsatellite FC873368_ssr126:126..146. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of FC873368 vs. ExPASy Swiss-Prot
Match: PGKH_ARATH (Phosphoglycerate kinase, chloroplastic OS=Arabidopsis thaliana GN=At1g56190 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.806e-11
Identity = 34/38 (89.47%), Postives = 35/38 (92.11%), Query Frame = 2 
Query:    2 VAGVMSHISTGGGASLELLEGKELPGVVALDEATPVAV 115
            VAGVMSHISTGGGASLELLEGK LPGV+ALDEA PV V
Sbjct:  441 VAGVMSHISTGGGASLELLEGKVLPGVIALDEAIPVTV 478
The following BLAST results are available for this feature:
BLAST of FC873368 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PGKH_ARATH1.806e-1189.47Phosphoglycerate kinase, chloroplastic OS=Arabidop... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI3AD07FM1 AbsDev Citrus clementina cDNA clone KN0AAI3AD07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873368 ID=FC873368; Name=FC873368; organism=Citrus clementina; type=EST; length=494bp
AGTTGCCGGTGTCATGAGCCACATATCAACTGGTGGTGGTGCCAGTTTGG
AGTTGTTGGAAGGCAAAGAGCTTCCAGGTGTCGTTGCTCTTGATGAAGCT
ACACCAGTTGCCGTGTAAGATCAAAATTATTATTATTATTATTATTCTTT
TTGGCCCACTTTTCAATGTGATTTATGTTTGTAAACGAGAAATGAAAACC
TTGTAAGAAGATATGAGTTCATCTTGTAAATTTTCACCTTTGTGATCAAT
GTATGGTCCCATTCTTGCTGAAATTGCTACCAATCACTGTATGGATAGGG
CAAGCAGAGCCACCCAATCTTTTTCAAATAAATTGGCTCTTTTCCTCATT
AAAAAAAAGAACACAGAAAAAAAAAAAAAAAAAAGAACTTCCTTCAAATA
ACTAGCTGAAAAAAAAAACAAAAAAGCTGGAACAAAAAGCTGAAAAAACA
AAGGTGGACTCCTCCCTTTGCTAACACGGCTGCTATTTTTGAAA
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