FC873370

Overview
NameFC873370
Unique NameFC873370
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length271
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig746 contig Ccv1_Contig746:273..543. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873370 vs. ExPASy Swiss-Prot
Match: RL301_ARATH (Putative 60S ribosomal protein L30-1 OS=Arabidopsis thaliana GN=RPL30A PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.328e-20
Identity = 44/51 (86.27%), Postives = 47/51 (92.16%), Query Frame = 2
Query:    2 EYYAMLARFGVHHYNENYVYLGTACGKYFRVSCLSIIDPGDSDIIKSLPGE 154
            EYYAMLA+ GVHHYN N V LGTACGKYFRVSCLSI+DPGDSDIIKSLPG+
Sbjct:   61 EYYAMLAKVGVHHYNRNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSLPGD 111          
BLAST of FC873370 vs. ExPASy Swiss-Prot
Match: RL302_ARATH (60S ribosomal protein L30-2 OS=Arabidopsis thaliana GN=RPL30B PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.774e-20
Identity = 43/51 (84.31%), Postives = 47/51 (92.16%), Query Frame = 2
Query:    2 EYYAMLARFGVHHYNENYVYLGTACGKYFRVSCLSIIDPGDSDIIKSLPGE 154
            EYYAMLA+ GVHHYN N V LGTACGKYFRVSCLSI+DPGDSDIIKS+PG+
Sbjct:   61 EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSIPGD 111          
BLAST of FC873370 vs. ExPASy Swiss-Prot
Match: RL30_EUPES (60S ribosomal protein L30 OS=Euphorbia esula GN=RPL30 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.971e-19
Identity = 43/52 (82.69%), Postives = 46/52 (88.46%), Query Frame = 2
Query:    2 EYYAMLARFGVHHYNENYVYLGTACGKYFRVSCLSIIDPGDSDIIKSLPGEH 157
            EYYAMLA+ GVHHYN N V LGTACGKYFRV CLSIID GDSDIIKS+PG+H
Sbjct:   61 EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVCCLSIIDAGDSDIIKSIPGDH 112          
BLAST of FC873370 vs. ExPASy Swiss-Prot
Match: RL30_LUPLU (60S ribosomal protein L30 OS=Lupinus luteus GN=RPL30 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.489e-19
Identity = 41/51 (80.39%), Postives = 46/51 (90.20%), Query Frame = 2
Query:    2 EYYAMLARFGVHHYNENYVYLGTACGKYFRVSCLSIIDPGDSDIIKSLPGE 154
            EYYAMLA+ GVHHYN N V LGTACGKY+RV CLSI+DPGDSDIIK+LPG+
Sbjct:   61 EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIVDPGDSDIIKTLPGD 111          
BLAST of FC873370 vs. ExPASy Swiss-Prot
Match: RL303_ARATH (60S ribosomal protein L30-3 OS=Arabidopsis thaliana GN=RPL30C PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.489e-19
Identity = 42/51 (82.35%), Postives = 46/51 (90.20%), Query Frame = 2
Query:    2 EYYAMLARFGVHHYNENYVYLGTACGKYFRVSCLSIIDPGDSDIIKSLPGE 154
            EYYAMLA+ GVH YN N V LGTACGKYFRVSCLSI+DPGDSDIIK+LPG+
Sbjct:   61 EYYAMLAKVGVHRYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKTLPGD 111          
BLAST of FC873370 vs. ExPASy Swiss-Prot
Match: RL30_MAIZE (60S ribosomal protein L30 OS=Zea mays GN=RPL30 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.110e-17
Identity = 40/51 (78.43%), Postives = 44/51 (86.27%), Query Frame = 2
Query:    2 EYYAMLARFGVHHYNENYVYLGTACGKYFRVSCLSIIDPGDSDIIKSLPGE 154
            EYYAMLA+  VHH++ N V LGTACGKYFRV CLSIIDPGDSDIIK+ PGE
Sbjct:   61 EYYAMLAKVTVHHFHGNNVDLGTACGKYFRVCCLSIIDPGDSDIIKTTPGE 111          
BLAST of FC873370 vs. ExPASy Swiss-Prot
Match: RL30_BRABE (60S ribosomal protein L30 OS=Branchiostoma belcheri GN=RPL30 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.934e-16
Identity = 37/51 (72.55%), Postives = 43/51 (84.31%), Query Frame = 2
Query:    2 EYYAMLARFGVHHYNENYVYLGTACGKYFRVSCLSIIDPGDSDIIKSLPGE 154
            EYYAMLA+ GVHHY+ N + LGTACGKYFRV  L+I DPGDSDII+S+P E
Sbjct:   58 EYYAMLAKTGVHHYSGNNIELGTACGKYFRVCTLAITDPGDSDIIRSMPAE 108          
BLAST of FC873370 vs. ExPASy Swiss-Prot
Match: RL30_RAT (60S ribosomal protein L30 OS=Rattus norvegicus GN=Rpl30 PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.322e-15
Identity = 36/49 (73.47%), Postives = 43/49 (87.76%), Query Frame = 2
Query:    2 EYYAMLARFGVHHYNENYVYLGTACGKYFRVSCLSIIDPGDSDIIKSLP 148
            EYYAMLA+ GVHHY+ N + LGTACGKY+RV  L+IIDPGDSDII+S+P
Sbjct:   61 EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMP 109          
BLAST of FC873370 vs. ExPASy Swiss-Prot
Match: RL30_OPHHA (60S ribosomal protein L30 OS=Ophiophagus hannah GN=RPL30 PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.322e-15
Identity = 36/49 (73.47%), Postives = 43/49 (87.76%), Query Frame = 2
Query:    2 EYYAMLARFGVHHYNENYVYLGTACGKYFRVSCLSIIDPGDSDIIKSLP 148
            EYYAMLA+ GVHHY+ N + LGTACGKY+RV  L+IIDPGDSDII+S+P
Sbjct:   61 EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMP 109          
BLAST of FC873370 vs. ExPASy Swiss-Prot
Match: RL30_MOUSE (60S ribosomal protein L30 OS=Mus musculus GN=Rpl30 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.322e-15
Identity = 36/49 (73.47%), Postives = 43/49 (87.76%), Query Frame = 2
Query:    2 EYYAMLARFGVHHYNENYVYLGTACGKYFRVSCLSIIDPGDSDIIKSLP 148
            EYYAMLA+ GVHHY+ N + LGTACGKY+RV  L+IIDPGDSDII+S+P
Sbjct:   61 EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMP 109          
The following BLAST results are available for this feature:
BLAST of FC873370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RL301_ARATH2.328e-2086.27Putative 60S ribosomal protein L30-1 OS=Arabidopsi... [more]
RL302_ARATH6.774e-2084.3160S ribosomal protein L30-2 OS=Arabidopsis thalian... [more]
RL30_EUPES1.971e-1982.6960S ribosomal protein L30 OS=Euphorbia esula GN=RP... [more]
RL30_LUPLU7.489e-1980.3960S ribosomal protein L30 OS=Lupinus luteus GN=RPL... [more]
RL303_ARATH7.489e-1982.3560S ribosomal protein L30-3 OS=Arabidopsis thalian... [more]
RL30_MAIZE4.110e-1778.4360S ribosomal protein L30 OS=Zea mays GN=RPL30 PE=... [more]
RL30_BRABE5.934e-1672.5560S ribosomal protein L30 OS=Branchiostoma belcher... [more]
RL30_RAT1.322e-1573.4760S ribosomal protein L30 OS=Rattus norvegicus GN=... [more]
RL30_OPHHA1.322e-1573.4760S ribosomal protein L30 OS=Ophiophagus hannah GN... [more]
RL30_MOUSE1.322e-1573.4760S ribosomal protein L30 OS=Mus musculus GN=Rpl30... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AD09FM1 AbsDev Citrus clementina cDNA clone KN0AAI3AD09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873370 ID=FC873370; Name=FC873370; organism=Citrus clementina; type=EST; length=271bp
TGAGTACTATGCTATGCTTGCTAGATTTGGTGTACACCACTACAATGAAA
ACTATGTCTATTTGGGAACAGCATGTGGAAAGTACTTCCGTGTGTCTTGC
TTGAGCATTATCGATCCAGGTGATTCTGATATCATCAAGTCACTTCCGGG
AGAACACTGAGCCTGATTCAGAGTTCAAACCTGCATCTTACTGTTCTGAT
TGTTTAATTGTGGAATGCTGTTTCTCAATTGATATTTTCTTTTGAACATC
CTCAATATACACTTTCTTATA
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