FC873379

Overview
NameFC873379
Unique NameFC873379
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length504
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873379 vs. ExPASy Swiss-Prot
Match: EHD3_HUMAN (EH domain-containing protein 3 OS=Homo sapiens GN=EHD3 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.230e-19
Identity = 40/86 (46.51%), Postives = 64/86 (74.42%), Query Frame = 3
Query:    3 YIISHLRKEMPAMMGKAKTQQKLIDNLAEEFGKVQKEFHLPPGDFPNVEHFKEILSGYSFDKFEKLKPKMIQVVDDMLGYDIPDLL 260
            YIIS L+KEMP++ GK   +++L++NLAE +G++++E  + PGDFPN++  ++ L    F KF+ LK K+++VVDDML +DI  L+
Sbjct:  309 YIISSLKKEMPSVFGKDNKKKELVNNLAEIYGRIEREHQISPGDFPNLKRMQDQLQAQDFSKFQPLKSKLLEVVDDMLAHDIAQLM 394          
BLAST of FC873379 vs. ExPASy Swiss-Prot
Match: EHD3_RAT (EH domain-containing protein 3 OS=Rattus norvegicus GN=Ehd3 PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 5.524e-19
Identity = 40/86 (46.51%), Postives = 64/86 (74.42%), Query Frame = 3
Query:    3 YIISHLRKEMPAMMGKAKTQQKLIDNLAEEFGKVQKEFHLPPGDFPNVEHFKEILSGYSFDKFEKLKPKMIQVVDDMLGYDIPDLL 260
            YIIS L+KEMP++ GK   +++L++NLAE +G++++E  + PGDFPN++  ++ L    F KF+ LK K+++VVDDML +DI  L+
Sbjct:  309 YIISSLKKEMPSVFGKDTKKKELVNNLAEIYGRIEREHQISPGDFPNLKRMQDQLQAQDFSKFQPLKSKLLEVVDDMLAHDIAQLM 394          
BLAST of FC873379 vs. ExPASy Swiss-Prot
Match: EHD3_MOUSE (EH domain-containing protein 3 OS=Mus musculus GN=Ehd3 PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 5.524e-19
Identity = 40/86 (46.51%), Postives = 64/86 (74.42%), Query Frame = 3
Query:    3 YIISHLRKEMPAMMGKAKTQQKLIDNLAEEFGKVQKEFHLPPGDFPNVEHFKEILSGYSFDKFEKLKPKMIQVVDDMLGYDIPDLL 260
            YIIS L+KEMP++ GK   +++L++NLAE +G++++E  + PGDFPN++  ++ L    F KF+ LK K+++VVDDML +DI  L+
Sbjct:  309 YIISSLKKEMPSVFGKDTKKKELVNNLAEIYGRIEREHQISPGDFPNLKRMQDQLQAQDFSKFQPLKSKLLEVVDDMLAHDIAQLM 394          
BLAST of FC873379 vs. ExPASy Swiss-Prot
Match: EHD1_BOVIN (EH domain-containing protein 1 OS=Bos taurus GN=EHD1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.977e-18
Identity = 40/86 (46.51%), Postives = 59/86 (68.60%), Query Frame = 3
Query:    3 YIISHLRKEMPAMMGKAKTQQKLIDNLAEEFGKVQKEFHLPPGDFPNVEHFKEILSGYSFDKFEKLKPKMIQVVDDMLGYDIPDLL 260
            YIIS L+KEMP + GK   +++L++NL E + K+++E  + PGDFPN+   +E+L    F KF+ LKPK++  VDDML  DI  L+
Sbjct:  309 YIISSLKKEMPNVFGKESKKKELVNNLGEIYQKIEREHQISPGDFPNLRKMQELLQTQDFSKFQALKPKLLDTVDDMLANDIARLM 394          
BLAST of FC873379 vs. ExPASy Swiss-Prot
Match: EHD2_MOUSE (EH domain-containing protein 2 OS=Mus musculus GN=Ehd2 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.361e-17
Identity = 41/90 (45.56%), Postives = 59/90 (65.56%), Query Frame = 3
Query:    3 YIISHLRKEMPAMMGKAKTQQKLIDNLAEEFGKVQKEFHLPPGDFPNVEHFKEILSGYSFDKFEKLKPKMIQVVDDMLGYDIPDLLKNFR 272
            YIIS+L+KEMP + GK   +++LI  L   F K+Q E H+ PGDFP+ +  +E+L  + F KF  LKPK+++ +DDML  DI  L+   R
Sbjct:  309 YIISYLKKEMPTVFGKENKKKQLILKLPVIFAKIQLEHHISPGDFPDCQKMQELLMAHDFTKFHSLKPKLLEALDDMLAQDIAKLMPLLR 398          
BLAST of FC873379 vs. ExPASy Swiss-Prot
Match: EHD2_RAT (EH domain-containing protein 2 OS=Rattus norvegicus GN=Ehd2 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.777e-17
Identity = 40/90 (44.44%), Postives = 61/90 (67.78%), Query Frame = 3
Query:    3 YIISHLRKEMPAMMGKAKTQQKLIDNLAEEFGKVQKEFHLPPGDFPNVEHFKEILSGYSFDKFEKLKPKMIQVVDDMLGYDIPDLLKNFR 272
            YIIS+L+KEMP++ GK   +++LI  L   F K+Q E H+ PGDFP+ +  +E+L  + F KF  LKPK+++ +D+ML +DI  L+   R
Sbjct:  309 YIISYLKKEMPSVFGKENKKKQLIFKLPVIFAKIQLEHHISPGDFPDCQKMQELLMAHDFTKFHSLKPKLLEALDEMLTHDIAKLMPLLR 398          
BLAST of FC873379 vs. ExPASy Swiss-Prot
Match: EHD2_HUMAN (EH domain-containing protein 2 OS=Homo sapiens GN=EHD2 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 2.321e-17
Identity = 40/90 (44.44%), Postives = 61/90 (67.78%), Query Frame = 3
Query:    3 YIISHLRKEMPAMMGKAKTQQKLIDNLAEEFGKVQKEFHLPPGDFPNVEHFKEILSGYSFDKFEKLKPKMIQVVDDMLGYDIPDLLKNFR 272
            YIIS+L+KEMP++ GK   +++LI  L   F K+Q E H+ PGDFP+ +  +E+L  + F KF  LKPK+++ +D+ML +DI  L+   R
Sbjct:  309 YIISYLKKEMPSVFGKENKKKQLILKLPVIFAKIQLEHHISPGDFPDCQKMQELLMAHDFTKFHSLKPKLLEALDEMLTHDIAKLMPLLR 398          
BLAST of FC873379 vs. ExPASy Swiss-Prot
Match: EHD1_PONAB (EH domain-containing protein 1 OS=Pongo abelii GN=EHD1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.031e-17
Identity = 39/86 (45.35%), Postives = 59/86 (68.60%), Query Frame = 3
Query:    3 YIISHLRKEMPAMMGKAKTQQKLIDNLAEEFGKVQKEFHLPPGDFPNVEHFKEILSGYSFDKFEKLKPKMIQVVDDMLGYDIPDLL 260
            YIIS L+KEMP + GK   +++L++NL E + K+++E  + PGDFP++   +E+L    F KF+ LKPK++  VDDML  DI  L+
Sbjct:  309 YIISSLKKEMPNVFGKESKKKELVNNLGEIYQKIEREHQISPGDFPSLRKMQELLQTQDFSKFQALKPKLLDTVDDMLANDIARLM 394          
BLAST of FC873379 vs. ExPASy Swiss-Prot
Match: EHD1_HUMAN (EH domain-containing protein 1 OS=Homo sapiens GN=EHD1 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 3.031e-17
Identity = 39/86 (45.35%), Postives = 59/86 (68.60%), Query Frame = 3
Query:    3 YIISHLRKEMPAMMGKAKTQQKLIDNLAEEFGKVQKEFHLPPGDFPNVEHFKEILSGYSFDKFEKLKPKMIQVVDDMLGYDIPDLL 260
            YIIS L+KEMP + GK   +++L++NL E + K+++E  + PGDFP++   +E+L    F KF+ LKPK++  VDDML  DI  L+
Sbjct:  309 YIISSLKKEMPNVFGKESKKKELVNNLGEIYQKIEREHQISPGDFPSLRKMQELLQTQDFSKFQALKPKLLDTVDDMLANDIARLM 394          
BLAST of FC873379 vs. ExPASy Swiss-Prot
Match: EHD1_RAT (EH domain-containing protein 1 OS=Rattus norvegicus GN=Ehd1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.566e-16
Identity = 38/86 (44.19%), Postives = 58/86 (67.44%), Query Frame = 3
Query:    3 YIISHLRKEMPAMMGKAKTQQKLIDNLAEEFGKVQKEFHLPPGDFPNVEHFKEILSGYSFDKFEKLKPKMIQVVDDMLGYDIPDLL 260
            YIIS L+KEMP + GK   +++L++NL E + K+++E  +  GDFP++   +E+L    F KF+ LKPK++  VDDML  DI  L+
Sbjct:  309 YIISSLKKEMPNVFGKESKKKELVNNLGEIYQKIEREHQISSGDFPSLRKMQELLQTQDFSKFQALKPKLLDTVDDMLANDIARLM 394          
The following BLAST results are available for this feature:
BLAST of FC873379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
EHD3_HUMAN4.230e-1946.51EH domain-containing protein 3 OS=Homo sapiens GN=... [more]
EHD3_RAT5.524e-1946.51EH domain-containing protein 3 OS=Rattus norvegicu... [more]
EHD3_MOUSE5.524e-1946.51EH domain-containing protein 3 OS=Mus musculus GN=... [more]
EHD1_BOVIN7.977e-1846.51EH domain-containing protein 1 OS=Bos taurus GN=EH... [more]
EHD2_MOUSE1.361e-1745.56EH domain-containing protein 2 OS=Mus musculus GN=... [more]
EHD2_RAT1.777e-1744.44EH domain-containing protein 2 OS=Rattus norvegicu... [more]
EHD2_HUMAN2.321e-1744.44EH domain-containing protein 2 OS=Homo sapiens GN=... [more]
EHD1_PONAB3.031e-1745.35EH domain-containing protein 1 OS=Pongo abelii GN=... [more]
EHD1_HUMAN3.031e-1745.35EH domain-containing protein 1 OS=Homo sapiens GN=... [more]
EHD1_RAT2.566e-1644.19EH domain-containing protein 1 OS=Rattus norvegicu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BH10FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BH10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873379 ID=FC873379; Name=FC873379; organism=Citrus clementina; type=EST; length=504bp
CTTATATCATCAGTCATCTTAGAAAAGAGATGCCTGCTATGATGGGCAAA
GCAAAGACTCAACAAAAACTCATTGATAATTTAGCAGAGGAATTCGGAAA
GGTCCAGAAGGAATTCCATTTACCTCCCGGAGATTTCCCTAATGTCGAGC
ACTTCAAGGAGATATTGAGTGGTTACAGTTTCGATAAATTTGAGAAGCTG
AAACCTAAGATGATACAGGTTGTTGATGATATGCTTGGTTATGACATTCC
CGACCTCCTGAAGAATTTCAGAAATCCCTATGATTAGGAGAGTGAGTGTG
GCCATAGAAGATAAATGTATCAATTGTTAACAGAAAAAGTTTATCAGCAT
CCCGCCAGAAAATTTATTTGTTTCTAGATCGTTAGAGGTGAAAATCTCGT
GTCTTTTATGCCCTTGTGCGACTCTTTGTATAATCCAGTTTTTAACTTTT
AAGGAATCCTAAATGATTCTTTAATTTTGAAAAAAAAAAAAAAAAAAAAA
AAAA
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