FC873386

Overview
NameFC873386
Unique NameFC873386
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length841
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1210 contig Ccv1_Contig1210:1..841. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873386 vs. ExPASy Swiss-Prot
Match: YQJG_ECOLI (Uncharacterized protein yqjG OS=Escherichia coli (strain K12) GN=yqjG PE=3 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 7.286e-58
Identity = 118/261 (45.21%), Postives = 158/261 (60.54%), Query Frame = 1
Query:   58 GWVFPATNTEEPGAEPDPLNGAKTIRDLYELASTNYSGKFTVPVCSLN**SPFEYCSLCLHVLTYLSGFVLY*VLWDKKLKTIVNNESAEIIRMFNTEFNDIAENASLDLHPSDQRDQIDGTNEWIYNGISNGVYRCGFATKQGPYDEAVKQVYDALDKCEEILGKQRYICGNRLTEADIRLFVTLITFDEVYAVHFKCNKILLREYPNLFNYTKDIYQIPSMSSTVNMQHIKRHYYGSHPSISPYGIIPLGPDIDYSSPH 840
            GW F   +   PGA  D L   + +  LY  A  +YSG+ TVPV                              LWDKK  TIV+NESAEIIRMFNT F+ +   A  D +P   + +ID  N WIY+ ++NGVY+ GFAT Q  YDEAV +V+++L + E+ILG+ RY+ GN+LTEADIRL+ TL+ FD VY  HFKC+K  + +Y NL+ + +DIYQ+P ++ TVN  HI+ HY+ SH +I+P GII +GP  D   PH
Sbjct:   95 GWTF---DDSFPGATGDTLYQNEFLYQLYLHADPHYSGRVTVPV------------------------------LWDKKNHTIVSNESAEIIRMFNTAFDALGAKAG-DYYPPALQTKIDELNGWIYDTVNNGVYKAGFATSQEAYDEAVAKVFESLARLEQILGQHRYLTGNQLTEADIRLWTTLVRFDPVYVTHFKCDKHRISDYLNLYGFLRDIYQMPGIAETVNFDHIRNHYFRSHKTINPTGIISIGPWQDLDEPH 321          
BLAST of FC873386 vs. ExPASy Swiss-Prot
Match: GTO2_SCHPO (Glutathione S-transferase omega-like 2 OS=Schizosaccharomyces pombe GN=gto2 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.091e-45
Identity = 104/260 (40.00%), Postives = 146/260 (56.15%), Query Frame = 1
Query:   58 GWVFPATNTEEPGAEPDPLNGAKTIRDLYELASTNYSGKFTVPVCSLN**SPFEYCSLCLHVLTYLSGFVLY*VLWDKKLKTIVNNESAEIIRMFNTEFNDIAENAS---LDLHPSDQRDQIDGTNEWIYNGISNGVYRCGFATKQGPYDEAVKQVYDALDKCEEIL--GKQRYICGNRLTEADIRLFVTLITFDEVYAVHFKCNKILLR-EYPNLFNYTKDIY-QIPSMSSTVNMQHIKRHYYGSHPSISPYGIIPLGP 816
            GW F   N     +  DPL  +  +R+LY  A  NY+ +FTVPV                              LWD K  TIVNNESAEIIRMFN  FN++ E+     +DL+PS  R +ID  N++ Y+ ++NGVY+ GFAT    Y++ V+ V+  LD+ E++L   K  ++ G+ LTE D+RL+ T++ FD VY  HFKCN   +R  YP++  + K +Y + P+   T + +HIK HY  SH  I+P GI PLGP
Sbjct:   81 GWNFDKEND----STGDPLYNSPYLRNLYFRADPNYNMRFTVPV------------------------------LWDSKYNTIVNNESAEIIRMFNDAFNEVIEDEEKRVVDLYPSSLRTKIDELNDYFYDTVNNGVYKTGFATTAEAYEKNVRVVFQGLDRLEQVLKESKGPFLLGDHLTETDVRLYTTIVRFDPVYVQHFKCNIGTIRHNYPHINQWLKRLYWKHPAFHETTDFKHIKCHYTQSHTQINPLGITPLGP 306          
BLAST of FC873386 vs. ExPASy Swiss-Prot
Match: GTO2_YEAST (Glutathione S-transferase omega-like 2 OS=Saccharomyces cerevisiae GN=ECM4 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.688e-38
Identity = 103/268 (38.43%), Postives = 137/268 (51.12%), Query Frame = 1
Query:   97 AEPDPLNGAKTIRDLYELASTNYSGKFTVPVCSLN**SPFEYCSLCLHVLTYLSGFVLY*VLWDKKLKTIVNNESAEIIRMFNT----EFNDIAENASLDLHPSDQRDQIDGTNEWIYNGISNGVYRCGFATKQGPYDEAVKQVYDALDKCEEILG------KQRY-------------ICGNRLTEADIRLFVTLITFDEVYAVHFKCNKILLRE-YPNLFNYTKDIY-QIPSMSSTVNMQHIKRHYYGSHPSISPYGIIPLGPDID 825
            A  +P  G K I DLY  +   YS +FTVPV                              LWD + +TIVNNES+EIIR+ N+    EF D  ++   DL P+  + QID  N W+Y+ I+NGVY+ GFA K   Y+  V  V++ LDK E+IL       K +Y               G++LTEADIRL+ T+I FD VY  HFKCN   +R  YP +  + +++Y    +   T +  HIK HY  SH  I+P GI PLGP  D
Sbjct:  130 ATNEPHYGYKRISDLYYKSDPQYSARFTVPV------------------------------LWDLETQTIVNNESSEIIRILNSSAFDEFVD-DDHKKTDLVPAQLKTQIDDFNSWVYDSINNGVYKTGFAEKAEVYESEVNNVFEHLDKVEKILSDKYSKLKAKYGEEDRQKILGEFFTVGDQLTEADIRLYTTVIRFDPVYVQHFKCNFTSIRAGYPFIHLWVRNLYWNYDAFRYTTDFDHIKLHYTRSHTRINPLGITPLGPKPD 366          
BLAST of FC873386 vs. ExPASy Swiss-Prot
Match: GTO3_YEAST (Glutathione S-transferase omega-like 3 OS=Saccharomyces cerevisiae GN=GTO3 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.998e-31
Identity = 91/268 (33.96%), Postives = 127/268 (47.39%), Query Frame = 1
Query:  106 DPLNGAKTIRDLYELASTNYSGKFTVPVCSLN**SPFEYCSLCLHVLTYLSGFVLY*VLWDKKLKTIVNNESAEIIRMFNTE-FNDIA--ENASLDLHPSDQRDQIDGTNEWIYNGISNGVYRCGFATKQGPYDEAVKQVYDALDKCEEILGKQ------------------RYIC-GNRLTEADIRLFVTLITFDEVYAVHFKCNKILLR-EYPNLFNYTKDIY-QIPSMSSTVNMQHIKRHYYGSHPSISPYGIIPLGPDIDYSSP 837
            +P  G K + D Y     +Y G+FTVPV                              LWD +  TIVNNES++II + N+  F++    E   + L P     QI   N W+Y+ I+NGVY+ GFA     Y+  V  ++  LDK E +L K+                  RY   G+ LTEAD+RL+ T++ FD VY  HFKCN   +R +Y  +  + K+IY +  +   T +  HIK  Y  S P ++P GI PLGP  D   P
Sbjct:  129 EPHYGYKRLSDFYFKTKPDYKGRFTVPV------------------------------LWDLETCTIVNNESSDIIGIMNSAAFDEFVGEEYRQVRLVPRSLEAQITEFNSWVYDKINNGVYKAGFAECAEVYEREVTSLFQYLDKLENLLDKKYTDLEAEYGKNNKDKILDRYFAIGDTLTEADVRLYPTIVRFDVVYHQHFKCNLATIRDDYSRIHTWLKNIYWRHEAFQRTTDFTHIKLGYTRSQPRVNPIGITPLGPKPDIRPP 366          
BLAST of FC873386 vs. ExPASy Swiss-Prot
Match: GTO1_YEAST (Glutathione S-transferase omega-like 1 OS=Saccharomyces cerevisiae GN=GTO1 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 9.281e-29
Identity = 92/270 (34.07%), Postives = 127/270 (47.04%), Query Frame = 1
Query:  106 DPLNGAKTIRDLYELASTNYSG-KFTVPVCSLN**SPFEYCSLCLHVLTYLSGFVLY*VLWDKKLKTIVNNESAEIIRMFNT----EFNDIAENASLDLHPSDQRDQIDGTNEWIYNGISNGVYRCGFATKQGPYDEAVKQVYDALDKCEEIL-------------GKQR-----YICGNRLTEADIRLFVTLITFDEVYAVHFKCNKILLRE-YPNLFNYTKDIY-QIPSMSSTVNMQHIKRHYYG---SHPSISPYGIIPLGPDIDYS 831
            DP+     + +LY L    Y G KFTVPV                              LWD K + IVNNES +IIR+ N+    EF    E   +DL P D  D+ID   +W++  I+ GVY+ G A     Y+  VK +++ L K E +L              KQ+     ++ G RLTEADIRL+ ++I FD VY  HFKCN   +R+ +P L  +  ++Y        T +  HIK  Y     S   I+ +GI+PLGP  D S
Sbjct:  115 DPVENISRLSELYYLNDPKYPGTKFTVPV------------------------------LWDSKTRKIVNNESGDIIRILNSGVFDEFIQSEETNVIDLVPHDLIDEIDKNIKWVHPKINLGVYKVGLAENGKIYETEVKTLFENLQKMECVLKENYKRLEEQFSGNKQKILAKYFVLGQRLTEADIRLYPSIIRFDVVYVQHFKCNLKTIRDGFPYLHLWLINLYWNYAEFRFTTDFNHIKLFYIRMEVSRNKINQFGIVPLGPKPDIS 354          
The following BLAST results are available for this feature:
BLAST of FC873386 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
YQJG_ECOLI7.286e-5845.21Uncharacterized protein yqjG OS=Escherichia coli (... [more]
GTO2_SCHPO1.091e-4540.00Glutathione S-transferase omega-like 2 OS=Schizosa... [more]
GTO2_YEAST1.688e-3838.43Glutathione S-transferase omega-like 2 OS=Saccharo... [more]
GTO3_YEAST1.998e-3133.96Glutathione S-transferase omega-like 3 OS=Saccharo... [more]
GTO1_YEAST9.281e-2934.07Glutathione S-transferase omega-like 1 OS=Saccharo... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI3AE07FM1 AbsDev Citrus clementina cDNA clone KN0AAI3AE07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873386 ID=FC873386; Name=FC873386; organism=Citrus clementina; type=EST; length=841bp
CATTTTGCAGTCAGTCCAACCCATTTGGGAACAACAAAAGAAACCGATGA
GCATATGGGATGGGTTTTTCCGGCTACCAATACTGAGGAACCAGGAGCTG
AGCCTGACCCTTTAAATGGAGCCAAAACCATAAGAGACCTGTATGAGCTC
GCAAGTACAAACTACTCAGGGAAGTTCACTGTCCCCGTATGTTCACTTAA
CTAGTGATCTCCATTTGAATATTGTTCTCTATGTTTGCATGTGCTAACTT
ACTTGAGTGGTTTTGTTCTATACTAGGTACTGTGGGATAAGAAGTTGAAG
ACGATTGTTAATAATGAGAGTGCGGAGATAATCCGCATGTTTAATACGGA
ATTCAATGATATAGCTGAAAATGCTTCTCTGGATCTACATCCATCTGATC
AGCGAGATCAAATTGATGGGACTAATGAATGGATATACAATGGGATAAGC
AATGGTGTTTATCGATGTGGGTTTGCAACGAAGCAAGGACCTTATGATGA
AGCTGTTAAGCAGGTGTACGACGCATTGGACAAATGTGAAGAGATACTTG
GCAAGCAACGATACATTTGTGGAAACAGGCTGACTGAAGCAGATATTCGG
TTGTTTGTCACGCTTATAACATTTGATGAGGTTTATGCAGTTCACTTCAA
GTGCAACAAGATACTATTACGAGAATATCCAAATCTGTTCAACTACACCA
AAGACATATATCAGATTCCCAGCATGTCTAGCACTGTGAATATGCAACAC
ATCAAGCGGCATTACTATGGGAGTCATCCTTCTATCAGTCCATATGGGAT
CATCCCTCTTGGCCCTGATATCGATTATTCTTCACCCCATG
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