FC873390

Overview
NameFC873390
Unique NameFC873390
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length742
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14787 contig Ccv1_Contig14787:639..1380. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873390 vs. ExPASy Swiss-Prot
Match: LDHD_MOUSE (Probable D-lactate dehydrogenase, mitochondrial OS=Mus musculus GN=Ldhd PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.399e-37
Identity = 74/183 (40.44%), Postives = 115/183 (62.84%), Query Frame = 2
Query:   92 FLEAYSHEQTLIVQ-----KIVSEHNGTDFIFAEDPEAKKELWKMRKEALWACFAMEPSFEAMISDVCVPLSCLAELISRSKKELDASPLICTVIAHAGDGNFHTVILFDPSKEEDRQEAERLNRFMVHTALSMEGTCTGEHGIGTGKMKYLEKELGTGALETMKKIKVALDPNNIMNPGKLI 625
            FLE +  +QTL  Q      I  ++ G+ F +A++ E + ELW  R  A +A  A+ P  +A  +DVCVP+S L E++  +K+E+ AS L   ++ H GDGNFH ++L DP   E+++  +     +   AL++ GTCTGEHGIG GK + L++E+G   +ETM+++K  LDP  +MNPGK++
Sbjct:  302 FLEFHGSQQTLAEQLQRTEAITQDNGGSHFSWAKEAEKRNELWAARHNAWYAALALSPGSKAYSTDVCVPISRLPEILVETKEEIKASKLTGAIVGHVGDGNFHCILLVDPDDAEEQRRVKAFAENLGRRALALGGTCTGEHGIGLGKRQLLQEEVGPVGVETMRQLKNTLDPRGLMNPGKVL 484          
BLAST of FC873390 vs. ExPASy Swiss-Prot
Match: DLD1_KLULA (D-lactate dehydrogenase [cytochrome], mitochondrial OS=Kluyveromyces lactis GN=DLD1 PE=3 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 7.573e-37
Identity = 76/169 (44.97%), Postives = 110/169 (65.09%), Query Frame = 2
Query:  128 VQKIVSEHNGTDFIFAEDPEAKKELWKMRKEALWACF----AMEPSFEAMISDVCVPLSCLAELISRSKKELDASPLICTVIAHAGDGNFHTVILFDPSKEEDRQEAERLNRFMVHTALSMEGTCTGEHGIGTGKMKYLEKELGTGALETMKKIKVALDPNNIMNPGKL 622
            V+KI S+HN T F FA D ++K ELW+ RK ALW+         P      +DV VP+S  A++I+ +K+E++AS L+ +++ HAGDGNFH  I+++    E R+ AE +   MV  A+  EGTCTGEHG+G GK  YL +E+G   +  M+K+K+ALDP  I+NP K+
Sbjct:  401 VEKIASQHNNTKFEFATDEDSKLELWEARKVALWSTIDTGRKTNPDANIWTTDVAVPISKFADVINATKEEMNASGLLTSLVGHAGDGNFHAFIIYNT---EQRKTAETIVENMVKRAIDAEGTCTGEHGVGIGKRDYLLEEVGEDTVAVMRKLKLALDPKRILNPDKI 566          
BLAST of FC873390 vs. ExPASy Swiss-Prot
Match: LDHD_HUMAN (Probable D-lactate dehydrogenase, mitochondrial OS=Homo sapiens GN=LDHD PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.428e-35
Identity = 71/183 (38.80%), Postives = 114/183 (62.30%), Query Frame = 2
Query:   92 FLEAYSHEQTLIVQ-----KIVSEHNGTDFIFAEDPEAKKELWKMRKEALWACFAMEPSFEAMISDVCVPLSCLAELISRSKKELDASPLICTVIAHAGDGNFHTVILFDPSKEEDRQEAERLNRFMVHTALSMEGTCTGEHGIGTGKMKYLEKELGTGALETMKKIKVALDPNNIMNPGKLI 625
            FLE +  +Q L  Q     +IV ++  +DF +A++ E +  LW  R  A +A  A  P  +   +DVCVP+S L E++ ++K++L+AS L  +++ H GDGNFH ++L +P   E+    +     +   AL++ GTCTGEHGIG GK + L++E+G   +ETM+++K  LDP  +MNPGK++
Sbjct:  325 FLEFHGSQQALEEQLQRTEEIVQQNGASDFSWAKEAEERSRLWTARHNAWYAALATRPGCKGYSTDVCVPISRLPEIVVQTKEDLNASGLTGSIVGHVGDGNFHCILLVNPDDAEELGRVKAFAEQLGRRALALHGTCTGEHGIGMGKRQLLQEEVGAVGVETMRQLKAVLDPQGLMNPGKVL 507          
BLAST of FC873390 vs. ExPASy Swiss-Prot
Match: DLD1_YEAST (D-lactate dehydrogenase [cytochrome] 1, mitochondrial OS=Saccharomyces cerevisiae GN=DLD1 PE=1 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 4.300e-32
Identity = 71/169 (42.01%), Postives = 106/169 (62.72%), Query Frame = 2
Query:  128 VQKIVSEHNGTDFIFAEDPEAKKELWKMRKEALWACF----AMEPSFEAMISDVCVPLSCLAELISRSKKELDASPLICTVIAHAGDGNFHTVILFDPSKEEDRQEAERLNRFMVHTALSMEGTCTGEHGIGTGKMKYLEKELGTGALETMKKIKVALDPNNIMNPGKL 622
            V+ +   ++   F FA+D + K ELW+ RK ALW+      + + S +   +DV VP+S   ++I  +KK++ AS LI  ++ HAGDGNFH  I++     E+ +   +L   MV  AL+ EGTCTGEHG+G GK +YL +ELG   ++ M+KIK+A+DP  IMNP K+
Sbjct:  408 VKAVAQLNHCNSFQFAKDDDEKLELWEARKVALWSVLDADKSKDKSAKIWTTDVAVPVSQFDKVIHETKKDMQASKLINAIVGHAGDGNFHAFIVY--RTPEEHETCSQLVDRMVKRALNAEGTCTGEHGVGIGKREYLLEELGEAPVDLMRKIKLAIDPKRIMNPDKI 574          
BLAST of FC873390 vs. ExPASy Swiss-Prot
Match: GLCD_BACSU (Glycolate oxidase subunit glcD OS=Bacillus subtilis GN=glcD PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.665e-17
Identity = 49/165 (29.70%), Postives = 80/165 (48.48%), Query Frame = 2
Query:  128 VQKIVSEHNGTDFIFAEDPEAKKELWKMRKEALWACFAMEPSFEAMISDVCVPLSCLAELISRSKKELDASPLICTVIAHAGDGNFHTVILFDPSKEEDRQEAERLNRFMVHTALSMEGTCTGEHGIGTGKMKYLEKELGTGALETMKKIKVALDPNNIMNPGKL 622
            ++ I  + +      A+  E    L + R+ AL A   ++P+   ++ D  VP S +A ++           +      HAGDGN H     D   +++ +  E+    +   A+ + GT TGEHG+G  K  YLE +L    ++ MK +K A DP NI+NPGK+
Sbjct:  295 IEAICKKGDAVSVQTAQTEEEAFALTEARRSALSALARLKPT--TILEDATVPRSEIANMVKAINDIAAKYDISICTFGHAGDGNLHPTCTTDIRNKDEMERVEQAFAEIFEKAIELGGTITGEHGVGEMKAPYLEMKLKKEGIDAMKALKAAFDPRNILNPGKM 457          
BLAST of FC873390 vs. ExPASy Swiss-Prot
Match: GLCD_ECOLI (Glycolate oxidase subunit glcD OS=Escherichia coli (strain K12) GN=glcD PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.705e-17
Identity = 52/172 (30.23%), Postives = 82/172 (47.67%), Query Frame = 2
Query:  128 VQKIVSEHNGTDFIFAEDPEAKKELWKMRKEALWACFAMEPSFEAMISDVCVPLSCLAELISRSKKELDASPLICTVIAHAGDGNFHTVILFDPSKEEDRQEAERLNRFMVHTALSMEGTCTGEHGIGTGKMKYLEKELGTGALETMKKIKVALDPNNIMNPGKLIPP-HIC 640
            V  I+ +   TD   A+D   +   W  RK A  A   + P +  M  D  +P   L  ++    +      L    + HAGDGN H +ILFD ++  +   AE L   ++   + + G+ +GEHGIG  K+  +  +  +  + T   +K A DP+ ++NPGK IP  H C
Sbjct:  309 VNDILLKAGATDVRLAQDEAERVRFWAGRKNAFPAVGRISPDYYCM--DGTIPRRALPGVLEGIARLSQQYDLRVANVFHAGDGNMHPLILFDANEPGEFARAEELGGKILELCVEVGGSISGEHGIGREKINQMCAQFNSDEITTFHAVKAAFDPDGLLNPGKNIPTLHRC 478          
BLAST of FC873390 vs. ExPASy Swiss-Prot
Match: GLCD_ECOL6 (Glycolate oxidase subunit glcD OS=Escherichia coli O6 GN=glcD PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.705e-17
Identity = 52/172 (30.23%), Postives = 82/172 (47.67%), Query Frame = 2
Query:  128 VQKIVSEHNGTDFIFAEDPEAKKELWKMRKEALWACFAMEPSFEAMISDVCVPLSCLAELISRSKKELDASPLICTVIAHAGDGNFHTVILFDPSKEEDRQEAERLNRFMVHTALSMEGTCTGEHGIGTGKMKYLEKELGTGALETMKKIKVALDPNNIMNPGKLIPP-HIC 640
            V  I+ +   TD   A+D   +   W  RK A  A   + P +  M  D  +P   L  ++    +      L    + HAGDGN H +ILFD ++  +   AE L   ++   + + G+ +GEHGIG  K+  +  +  +  + T   +K A DP+ ++NPGK IP  H C
Sbjct:  309 VNDILLKAGATDVRLAQDEAERVRFWAGRKNAFPAVGRISPDYYCM--DGTIPRRALPGVLEGIARLSQQYDLRVANVFHAGDGNMHPLILFDANEPGEFARAEELGGKILELCVEVGGSISGEHGIGREKINQMCAQFNSDEITTFHAVKAAFDPDGLLNPGKNIPTLHRC 478          
The following BLAST results are available for this feature:
BLAST of FC873390 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
LDHD_MOUSE3.399e-3740.44Probable D-lactate dehydrogenase, mitochondrial OS... [more]
DLD1_KLULA7.573e-3744.97D-lactate dehydrogenase [cytochrome], mitochondria... [more]
LDHD_HUMAN1.428e-3538.80Probable D-lactate dehydrogenase, mitochondrial OS... [more]
DLD1_YEAST4.300e-3242.01D-lactate dehydrogenase [cytochrome] 1, mitochondr... [more]
GLCD_BACSU6.665e-1729.70Glycolate oxidase subunit glcD OS=Bacillus subtili... [more]
GLCD_ECOLI8.705e-1730.23Glycolate oxidase subunit glcD OS=Escherichia coli... [more]
GLCD_ECOL68.705e-1730.23Glycolate oxidase subunit glcD OS=Escherichia coli... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI3AE11FM1 AbsDev Citrus clementina cDNA clone KN0AAI3AE11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873390 ID=FC873390; Name=FC873390; organism=Citrus clementina; type=EST; length=742bp
TATATCGTCACCTTCTTCCAGCAAAAGGCGTATTTCAAAAGTTGTCTTCA
TTTTACCAGTGCTAACTTTTCTAATAAATTCTGTTTACTCCTTCTTAGAG
GCATATTCACATGAGCAGACACTAATTGTTCAGAAGATTGTGTCTGAGCA
CAATGGTACTGATTTTATTTTTGCGGAAGATCCTGAAGCTAAAAAGGAAC
TCTGGAAGATGAGAAAGGAGGCACTCTGGGCTTGCTTTGCAATGGAGCCG
AGTTTTGAAGCAATGATTTCTGATGTATGTGTTCCTCTTTCTTGCCTGGC
AGAGTTGATATCAAGGTCAAAGAAAGAGCTTGATGCATCACCACTGATTT
GCACTGTAATTGCTCATGCCGGTGATGGTAACTTTCACACGGTGATACTA
TTTGATCCGAGCAAAGAAGAGGACCGCCAGGAAGCAGAACGGTTAAATCG
ATTCATGGTCCATACTGCCTTGTCGATGGAAGGAACATGTACTGGTGAGC
ATGGTATTGGGACAGGGAAAATGAAGTATCTAGAAAAGGAGCTAGGCACT
GGAGCATTGGAGACGATGAAAAAAATCAAAGTAGCACTAGACCCCAACAA
CATCATGAATCCGGGAAAGCTAATTCCACCACATATTTGTTTCTAAATAT
TGTTGCGTAGATTGGTCTCAAAGGGGTAAAGCTGCTACACGTGCTCTTTT
TGTGAAAGGAATTGCAATTCATTGGAGGAATCCTAGCCTGTC
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