FC873409

Overview
NameFC873409
Unique NameFC873409
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length776
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11688 contig Ccv1_Contig11688:120..892. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC873409 vs. ExPASy Swiss-Prot
Match: TIF8_ARATH (Protein TIFY 8 OS=Arabidopsis thaliana GN=TIFY8 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.942e-18
Identity = 56/159 (35.22%), Postives = 77/159 (48.43%), Query Frame = 2 
Query:  302 DLASVEKQVGNHLEGVPFYGTRSDVSGPEISNRLAGSKRSNSESGFMGHDYPENMHLMKILRNAAEGEQSKRSKDDEMFYRMQQLRPTSASVMLQPSNISRIDANVSRWERTNPVNVGPAVQYPLR-GSQLVPFMHQVPTNRFRDANAGPSIISQSAAD 775
            DL       GNHL+G+  +G RSDVSG  +SNR +G+KRSNS+S F   ++PE +H  K+LRN                                P + S              +NV P    P R G Q+   +HQ+ T+RF+D N GPS+I+Q+AAD
Sbjct:   81 DLVERHSGGGNHLDGIQLFGPRSDVSGSIMSNRFSGNKRSNSDSHFTTQEHPETLHWSKLLRNG-------------------------------PGSFS--------------MNVNPLANQPPRGGGQISHLLHQLSTSRFKDENVGPSVIAQTAAD 194
The following BLAST results are available for this feature:
BLAST of FC873409 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TIF8_ARATH4.942e-1835.22Protein TIFY 8 OS=Arabidopsis thaliana GN=TIFY8 PE... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI3AH01FM1 AbsDev Citrus clementina cDNA clone KN0AAI3AH01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873409 ID=FC873409; Name=FC873409; organism=Citrus clementina; type=EST; length=776bp
TGAAGCAGAAGCAGCGGCAGCAGTGTCAAATGGGGATGAGGAGATGGCCG
TACTGATAATGGTAATGGCTCAACAAAACAAACCCAACAACAGCAATGCT
ACAAACATTACTAAGAGCAGTGACAGTCAGCAGCAACTGAAGGTGAAGCC
AATGTTATACGACTTTCTGGGCATGAAGCCCTCCCCGGATTGTTTGCCTG
TCGTTTTGGCTCCAAAGCCTGCCGTTTCGGAGCCCTCTCTGGCTTCAGTT
GGTGCTTCTTCTGCTGCTGGTGGTGGCCGTGGGCCCATCTCTTCTTCATC
TGATCTTGCTTCTGTAGAAAAGCAGGTCGGAAATCATCTTGAGGGGGTTC
CATTCTATGGTACAAGGAGCGATGTTTCTGGGCCTGAGATTAGCAACAGA
TTAGCAGGAAGTAAGCGAAGTAATTCAGAATCTGGCTTCATGGGTCATGA
CTACCCTGAGAACATGCATTTGATGAAGATTCTTAGAAATGCTGCAGAAG
GAGAGCAATCAAAAAGGTCCAAAGATGATGAGATGTTTTATCGCATGCAG
CAACTAAGGCCAACTTCTGCCTCTGTTATGTTACAGCCCTCCAATATCAG
TAGAATTGATGCCAATGTTTCTAGATGGGAGCGGACAAATCCTGTGAATG
TTGGCCCTGCTGTACAGTACCCTCTACGCGGGAGCCAATTAGTGCCTTTT
ATGCATCAAGTACCTACAAACAGGTTCAGGGATGCCAATGCTGGTCCTTC
AATTATCTCTCAATCAGCTGCTGATG
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