FC873410
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC873410 vs. ExPASy Swiss-Prot
Match: PAO2_ARATH (Probable polyamine oxidase 2 OS=Arabidopsis thaliana GN=PAO2 PE=2 SV=1) HSP 1 Score: 441.81 bits (1135), Expect = 1.914e-123 Identity = 212/254 (83.46%), Postives = 233/254 (91.73%), Query Frame = 3 Query: 3 QEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLXIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERY 764 QEELLPGGHGLMVRGY PVINTLAKGLDIR+GHRVTKI R Y GVKVT E G+TFVADA V+AVPLGVLK+ TIKFEP+LP+WK+ AI+DLGVGIENKII+HF+KVFWP VEFLGVV++TSYGCSYFLNLHKATGH VLVYMPAGQLA+DIEKMSDEAAANFA QL++ILPDA P+QYLVS WG+D NS+GSYSYD VGK HDLYERL +PVDNLFFAGEATS S+PGSVHGA+STGLMAAEDCRMRVLERY Sbjct: 212 QEELLPGGHGLMVRGYRPVINTLAKGLDIRVGHRVTKIVRRYNGVKVTTENGQTFVADAAVIAVPLGVLKSGTIKFEPKLPEWKQEAINDLGVGIENKIILHFEKVFWPKVEFLGVVAETSYGCSYFLNLHKATGHPVLVYMPAGQLAKDIEKMSDEAAANFAVLQLQRILPDALPPVQYLVSRWGSDVNSMGSYSYDIVGKPHDLYERLRVPVDNLFFAGEATSSSFPGSVHGAYSTGLMAAEDCRMRVLERY 465
BLAST of FC873410 vs. ExPASy Swiss-Prot
Match: PAO3_ARATH (Polyamine oxidase 3 OS=Arabidopsis thaliana GN=PAO3 PE=1 SV=1) HSP 1 Score: 431.024 bits (1107), Expect = 3.379e-120 Identity = 208/254 (81.89%), Postives = 229/254 (90.16%), Query Frame = 3 Query: 3 QEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLXIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERY 764 QEELLPGGHGLMVRGY PVINTL+KGLDIRL HR+TKI+R Y GVKVT E G TFVADA V+A+PLGVLK+ I FEP+LP WK+ AI+DLGVGIENKII++FD VFWPNVEFLGVV++TSYGCSYFLNLHKAT H VLVYMPAGQLARDIEK SDEAAANFAF+QL+KILPDASSPI YLVS WG+D NSLGSYSYD V K HDLYERL +P+DNLFFAGEATS SYPGSVHGA+STG++AAEDCRMRVLERY Sbjct: 213 QEELLPGGHGLMVRGYRPVINTLSKGLDIRLSHRITKISRRYSGVKVTTEKGDTFVADAAVIALPLGVLKSGMITFEPKLPQWKQEAINDLGVGIENKIILNFDNVFWPNVEFLGVVAETSYGCSYFLNLHKATSHPVLVYMPAGQLARDIEKKSDEAAANFAFSQLQKILPDASSPINYLVSRWGSDINSLGSYSYDIVNKPHDLYERLRVPLDNLFFAGEATSSSYPGSVHGAYSTGVLAAEDCRMRVLERY 466
BLAST of FC873410 vs. ExPASy Swiss-Prot
Match: PAO4_ARATH (Probable polyamine oxidase 4 OS=Arabidopsis thaliana GN=PAO4 PE=1 SV=1) HSP 1 Score: 333.569 bits (854), Expect = 7.341e-91 Identity = 161/254 (63.39%), Postives = 191/254 (75.20%), Query Frame = 3 Query: 3 QEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLXIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLER 761 Q+E L GGHGLMV+GY PVI T+AK LDIRL HRVTK+ R V V VEGG FVADAV++ VP+GVLKA I+FEP LP WK +AI LGVG ENKI + FD+ FWPNVEFLG+V+ TSY C YFLNLHKATGH VLVYM AG LA+D+EK+SDEA ANF QLKK+ PDA P QYLV+ WGTD N+LG Y+YD VG DLY RL PVDN+FF GEA ++ + GS HGAF G+ A+++C+ + ER Sbjct: 213 QDECLSGGHGLMVQGYEPVIRTIAKDLDIRLNHRVTKVVRTSNNKVIVAVEGGTNFVADAVIITVPIGVLKANLIQFEPELPQWKTSAISGLGVGNENKIALRFDRAFWPNVEFLGMVAPTSYACGYFLNLHKATGHPVLVYMAAGNLAQDLEKLSDEATANFVMLQLKKMFPDAPDPAQYLVTRWGTDPNTLGCYAYDVVGMPEDLYPRLGEPVDNIFFGGEAVNVEHQGSAHGAFLAGVSASQNCQRYIFER 466
BLAST of FC873410 vs. ExPASy Swiss-Prot
Match: LDL2_ORYSJ (Lysine-specific histone demethylase 1 homolog 2 OS=Oryza sativa subsp. japonica GN=Os08g0143400 PE=2 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 4.836e-34 Identity = 95/249 (38.15%), Postives = 134/249 (53.82%), Query Frame = 3 Query: 21 GGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW-PNVEFLGVVS-DTSYGCSYFL--NLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKI-------LPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLXIPV-DNLFFAGEATSMSYPGSVHGAFSTGLMAA 731 G H + G +++ L G+ + V +I GV +TVEGG+ F AD + PLGVLK+R+I FEP LP+ K AI LG G+ NK+ M F VFW ++ G ++ + S +FL + H +G VL+ + AG+ A + EK+ A + LK I +PD PIQ + WG+D GSYS+ VG S Y+ L V D LFFAGEAT+ +YP ++HGA +GL A Sbjct: 347 GDHCFLAGGNARLVHALCDGVPVLYEKTVKRIEHGEDGVSITVEGGQVFKADMALCTAPLGVLKSRSIIFEPELPERKLEAIQRLGFGLLNKVAMVFPHVFWDEEIDTFGCLNKERSKRGEFFLFYSYHTVSGGAVLIALVAGEAALEFEKVDPAVALHRVLGILKGIYGPKGVTVPD---PIQSCCTRWGSDPLCSGSYSHIRVGSSGTDYDILAESVNDRLFFAGEATNRAYPATMHGALLSGLREA 592
BLAST of FC873410 vs. ExPASy Swiss-Prot
Match: LDL2_ARATH (Lysine-specific histone demethylase 1 homolog 2 OS=Arabidopsis thaliana GN=LDL2 PE=2 SV=1) HSP 1 Score: 144.436 bits (363), Expect = 6.316e-34 Identity = 98/249 (39.36%), Postives = 135/249 (54.22%), Query Frame = 3 Query: 21 GGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYGCS---YFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKI-------LPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLXIPVDN-LFFAGEATSMSYPGSVHGAFSTGLMAA 731 G H + G +IN LA+GL I G V I GV+V + G + F AD ++ VPLGVLK R+IKFEP LP K+AAID LG G+ NK+ M F VFW ++ G ++++S F H +G LV + AG+ A+ E + +L+ I +PD PIQ + + WG+D S GSYS+ VG S Y+ L V N LFFAGEAT+ +P ++HGA+ +GL A Sbjct: 346 GDHCFLAGGNWRLINALAEGLPIIYGKSVDTIKYGDGGVEV-ISGSQIFQADMILCTVPLGVLKKRSIKFEPELPRRKQAAIDRLGFGLLNKVAMLFPSVFWGDELDTFGCLNESSINRGEFFLFYAYHTVSGGPALVALVAGEAAQRFECTEPSVLLHRVLKKLRGIYGPKGVVVPD---PIQTVCTRWGSDPLSYGSYSHVRVGSSGVDYDILAESVSNRLFFAGEATTRQHPATMHGAYLSGLREA 590
BLAST of FC873410 vs. ExPASy Swiss-Prot
Match: LSDA_DROME (Possible lysine-specific histone demethylase 1 OS=Drosophila melanogaster GN=Su(var)3-3 PE=1 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 2.654e-32 Identity = 97/267 (36.33%), Postives = 133/267 (49.81%), Query Frame = 3 Query: 24 GHGLMVR-GYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKT------FVADAVVVAVPLGVLK----------ARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLXIPV-----------DNLFFAGEATSMSYPGSVHGAFSTGLMAA 731 GH VR GY V L + LDIR+ V +I GV+V E KT + AD VV + LGVLK + T+KF+P LPDWK+ AI LG G NK+++ FD++FW PN G V T+ + VL+ + AG A +E ++D+ + LK I + S P + +V+ W +D + GSYSY +VG S Y+ L PV LFFAGE T +YP +VHGA+ +GL A Sbjct: 555 GHHTTVRNGYSCVPVALTENLDIRVNSAVKEIKYGTKGVEVVAENLKTSNSQMTYKADLVVCTLTLGVLKVAVAHKESQQSNTVKFDPPLPDWKQQAIKRLGFGNLNKVVLCFDRIFWDPNANLFGHVGSTTASRGEMFLFWSISSSPVLLALVAGMAANLVESVTDDIIIGRCMSVLKNIFGNTSVPQPKETVVTRWRSDPWARGSYSYVSVGSSGSDYDLLAAPVIPPSSKDAEGLPRLFFAGEHTIRNYPATVHGAYLSGLREA 821
BLAST of FC873410 vs. ExPASy Swiss-Prot
Match: LDL3_ORYSI (Lysine-specific histone demethylase 1 homolog 3 OS=Oryza sativa subsp. indica GN=B0103C08-B0602B01.13 PE=2 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 6.536e-31 Identity = 95/259 (36.68%), Postives = 135/259 (52.12%), Query Frame = 3 Query: 15 LPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW-PNVEFLG-VVSDTSYGCSYFLNLHKAT--GHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILP----DASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLXIPVDN--LFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLER 761 LPGG+G +V+ LA+ + I V I GV+V V GG+ + D + VPLGVLK +KF P LP K +I LG G+ NK+ M F VFW +++ G + D S+ +FL AT G +L+ + AG+ A + E A + L+ I + P+Q + + WGTD+ SLGSYS+ VG S D Y+ L V + LFFAGEAT+ YP ++HGAF +GL A + + R Sbjct: 389 LPGGNGRLVQA-------LAENVPIVYERTVHTIRNGGDGVQVVVNGGQVYEGDMALCTVPLGVLKNGGVKFVPELPQRKLDSIKRLGFGLLNKVAMLFPHVFWSTDLDTFGHLTEDPSHRGEFFLFYSYATVAGGPLLMALVAGEAAHNFETTPPTDAVSSVLKILRGIYEPQGIEVPDPLQSVCTRWGTDSFSLGSYSHVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFISGLREAANITLHANAR 640
BLAST of FC873410 vs. ExPASy Swiss-Prot
Match: LDL3_ORYSJ (Lysine-specific histone demethylase 1 homolog 3 OS=Oryza sativa subsp. japonica GN=Os04g0560300 PE=2 SV=2) HSP 1 Score: 134.035 bits (336), Expect = 8.537e-31 Identity = 95/259 (36.68%), Postives = 136/259 (52.51%), Query Frame = 3 Query: 15 LPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW-PNVEFLG-VVSDTSYGCSYFLNLHKAT--GHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILP----DASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLXIPVDN--LFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLER 761 LPGG+G +V+ +LA+ + I V I GV+V V GG+ + D + VPLGVLK +KF P LP K +I LG G+ NK+ M F VFW +++ G + D S+ +FL AT G +L+ + AG+ A + E A + L+ I + P+Q + + WGTD+ SLGSYS+ VG S D Y+ L V + LFFAGEAT+ YP ++HGAF +GL A + + R Sbjct: 389 LPGGNGRLVQ-------SLAENVPIVYERTVHTIRYGGDGVQVVVNGGQVYEGDMALCTVPLGVLKNGGVKFVPELPQRKLDSIKRLGFGLLNKVAMLFPHVFWSTDLDTFGHLTEDPSHRGEFFLFYSYATVAGGPLLMALVAGEAAHNFETTPPTDAVSSVLKILRGIYEPQGIEVPDPLQSVCTRWGTDSFSLGSYSHVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFISGLREAANITLHANAR 640
BLAST of FC873410 vs. ExPASy Swiss-Prot
Match: KDM1_MOUSE (Lysine-specific histone demethylase 1 OS=Mus musculus GN=Kdm1 PE=1 SV=2) HSP 1 Score: 130.954 bits (328), Expect = 7.227e-30 Identity = 93/264 (35.23%), Postives = 136/264 (51.52%), Query Frame = 3 Query: 21 GGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGVLKAR--TIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYG---CSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERL-------------XIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAA 731 G H + GY V LA+GLDI+L V ++ G +V T +TF+ DAV+ +PLGVLK + ++F P LP+WK +A+ +G G NK+++ FD+VFW P+V G V T+ F NL+KA +L+ + AG+ A +E +SD+ LK I ++ P + +VS W D + GSYSY G S + Y+ + P+ LFFAGE T +YP +VHGA +GL A Sbjct: 563 GSHLTVRNGYSCVPVALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAP---ILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 823
BLAST of FC873410 vs. ExPASy Swiss-Prot
Match: KDM1_HUMAN (Lysine-specific histone demethylase 1 OS=Homo sapiens GN=KDM1 PE=1 SV=2) HSP 1 Score: 130.954 bits (328), Expect = 7.227e-30 Identity = 93/264 (35.23%), Postives = 136/264 (51.52%), Query Frame = 3 Query: 21 GGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGVLKAR--TIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYG---CSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERL-------------XIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAA 731 G H + GY V LA+GLDI+L V ++ G +V T +TF+ DAV+ +PLGVLK + ++F P LP+WK +A+ +G G NK+++ FD+VFW P+V G V T+ F NL+KA +L+ + AG+ A +E +SD+ LK I ++ P + +VS W D + GSYSY G S + Y+ + P+ LFFAGE T +YP +VHGA +GL A Sbjct: 562 GSHLTVRNGYSCVPVALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAP---ILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 822 The following BLAST results are available for this feature:
BLAST of FC873410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 27
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC873410 ID=FC873410; Name=FC873410; organism=Citrus clementina; type=EST; length=765bpback to top |