FC873410

Overview
NameFC873410
Unique NameFC873410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length765
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12089 contig Ccv1_Contig12089:704..1468. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873410 vs. ExPASy Swiss-Prot
Match: PAO2_ARATH (Probable polyamine oxidase 2 OS=Arabidopsis thaliana GN=PAO2 PE=2 SV=1)

HSP 1 Score: 441.81 bits (1135), Expect = 1.914e-123
Identity = 212/254 (83.46%), Postives = 233/254 (91.73%), Query Frame = 3
Query:    3 QEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLXIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERY 764
            QEELLPGGHGLMVRGY PVINTLAKGLDIR+GHRVTKI R Y GVKVT E G+TFVADA V+AVPLGVLK+ TIKFEP+LP+WK+ AI+DLGVGIENKII+HF+KVFWP VEFLGVV++TSYGCSYFLNLHKATGH VLVYMPAGQLA+DIEKMSDEAAANFA  QL++ILPDA  P+QYLVS WG+D NS+GSYSYD VGK HDLYERL +PVDNLFFAGEATS S+PGSVHGA+STGLMAAEDCRMRVLERY
Sbjct:  212 QEELLPGGHGLMVRGYRPVINTLAKGLDIRVGHRVTKIVRRYNGVKVTTENGQTFVADAAVIAVPLGVLKSGTIKFEPKLPEWKQEAINDLGVGIENKIILHFEKVFWPKVEFLGVVAETSYGCSYFLNLHKATGHPVLVYMPAGQLAKDIEKMSDEAAANFAVLQLQRILPDALPPVQYLVSRWGSDVNSMGSYSYDIVGKPHDLYERLRVPVDNLFFAGEATSSSFPGSVHGAYSTGLMAAEDCRMRVLERY 465          
BLAST of FC873410 vs. ExPASy Swiss-Prot
Match: PAO3_ARATH (Polyamine oxidase 3 OS=Arabidopsis thaliana GN=PAO3 PE=1 SV=1)

HSP 1 Score: 431.024 bits (1107), Expect = 3.379e-120
Identity = 208/254 (81.89%), Postives = 229/254 (90.16%), Query Frame = 3
Query:    3 QEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLXIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLERY 764
            QEELLPGGHGLMVRGY PVINTL+KGLDIRL HR+TKI+R Y GVKVT E G TFVADA V+A+PLGVLK+  I FEP+LP WK+ AI+DLGVGIENKII++FD VFWPNVEFLGVV++TSYGCSYFLNLHKAT H VLVYMPAGQLARDIEK SDEAAANFAF+QL+KILPDASSPI YLVS WG+D NSLGSYSYD V K HDLYERL +P+DNLFFAGEATS SYPGSVHGA+STG++AAEDCRMRVLERY
Sbjct:  213 QEELLPGGHGLMVRGYRPVINTLSKGLDIRLSHRITKISRRYSGVKVTTEKGDTFVADAAVIALPLGVLKSGMITFEPKLPQWKQEAINDLGVGIENKIILNFDNVFWPNVEFLGVVAETSYGCSYFLNLHKATSHPVLVYMPAGQLARDIEKKSDEAAANFAFSQLQKILPDASSPINYLVSRWGSDINSLGSYSYDIVNKPHDLYERLRVPLDNLFFAGEATSSSYPGSVHGAYSTGVLAAEDCRMRVLERY 466          
BLAST of FC873410 vs. ExPASy Swiss-Prot
Match: PAO4_ARATH (Probable polyamine oxidase 4 OS=Arabidopsis thaliana GN=PAO4 PE=1 SV=1)

HSP 1 Score: 333.569 bits (854), Expect = 7.341e-91
Identity = 161/254 (63.39%), Postives = 191/254 (75.20%), Query Frame = 3
Query:    3 QEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWPNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLXIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLER 761
            Q+E L GGHGLMV+GY PVI T+AK LDIRL HRVTK+ R     V V VEGG  FVADAV++ VP+GVLKA  I+FEP LP WK +AI  LGVG ENKI + FD+ FWPNVEFLG+V+ TSY C YFLNLHKATGH VLVYM AG LA+D+EK+SDEA ANF   QLKK+ PDA  P QYLV+ WGTD N+LG Y+YD VG   DLY RL  PVDN+FF GEA ++ + GS HGAF  G+ A+++C+  + ER
Sbjct:  213 QDECLSGGHGLMVQGYEPVIRTIAKDLDIRLNHRVTKVVRTSNNKVIVAVEGGTNFVADAVIITVPIGVLKANLIQFEPELPQWKTSAISGLGVGNENKIALRFDRAFWPNVEFLGMVAPTSYACGYFLNLHKATGHPVLVYMAAGNLAQDLEKLSDEATANFVMLQLKKMFPDAPDPAQYLVTRWGTDPNTLGCYAYDVVGMPEDLYPRLGEPVDNIFFGGEAVNVEHQGSAHGAFLAGVSASQNCQRYIFER 466          
BLAST of FC873410 vs. ExPASy Swiss-Prot
Match: LDL2_ORYSJ (Lysine-specific histone demethylase 1 homolog 2 OS=Oryza sativa subsp. japonica GN=Os08g0143400 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.836e-34
Identity = 95/249 (38.15%), Postives = 134/249 (53.82%), Query Frame = 3
Query:   21 GGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW-PNVEFLGVVS-DTSYGCSYFL--NLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKI-------LPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLXIPV-DNLFFAGEATSMSYPGSVHGAFSTGLMAA 731
            G H  +  G   +++ L  G+ +     V +I     GV +TVEGG+ F AD  +   PLGVLK+R+I FEP LP+ K  AI  LG G+ NK+ M F  VFW   ++  G ++ + S    +FL  + H  +G  VL+ + AG+ A + EK+    A +     LK I       +PD   PIQ   + WG+D    GSYS+  VG S   Y+ L   V D LFFAGEAT+ +YP ++HGA  +GL  A
Sbjct:  347 GDHCFLAGGNARLVHALCDGVPVLYEKTVKRIEHGEDGVSITVEGGQVFKADMALCTAPLGVLKSRSIIFEPELPERKLEAIQRLGFGLLNKVAMVFPHVFWDEEIDTFGCLNKERSKRGEFFLFYSYHTVSGGAVLIALVAGEAALEFEKVDPAVALHRVLGILKGIYGPKGVTVPD---PIQSCCTRWGSDPLCSGSYSHIRVGSSGTDYDILAESVNDRLFFAGEATNRAYPATMHGALLSGLREA 592          
BLAST of FC873410 vs. ExPASy Swiss-Prot
Match: LDL2_ARATH (Lysine-specific histone demethylase 1 homolog 2 OS=Arabidopsis thaliana GN=LDL2 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.316e-34
Identity = 98/249 (39.36%), Postives = 135/249 (54.22%), Query Frame = 3
Query:   21 GGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYGCS---YFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKI-------LPDASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLXIPVDN-LFFAGEATSMSYPGSVHGAFSTGLMAA 731
            G H  +  G   +IN LA+GL I  G  V  I     GV+V + G + F AD ++  VPLGVLK R+IKFEP LP  K+AAID LG G+ NK+ M F  VFW   ++  G ++++S        F   H  +G   LV + AG+ A+  E        +    +L+ I       +PD   PIQ + + WG+D  S GSYS+  VG S   Y+ L   V N LFFAGEAT+  +P ++HGA+ +GL  A
Sbjct:  346 GDHCFLAGGNWRLINALAEGLPIIYGKSVDTIKYGDGGVEV-ISGSQIFQADMILCTVPLGVLKKRSIKFEPELPRRKQAAIDRLGFGLLNKVAMLFPSVFWGDELDTFGCLNESSINRGEFFLFYAYHTVSGGPALVALVAGEAAQRFECTEPSVLLHRVLKKLRGIYGPKGVVVPD---PIQTVCTRWGSDPLSYGSYSHVRVGSSGVDYDILAESVSNRLFFAGEATTRQHPATMHGAYLSGLREA 590          
BLAST of FC873410 vs. ExPASy Swiss-Prot
Match: LSDA_DROME (Possible lysine-specific histone demethylase 1 OS=Drosophila melanogaster GN=Su(var)3-3 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.654e-32
Identity = 97/267 (36.33%), Postives = 133/267 (49.81%), Query Frame = 3
Query:   24 GHGLMVR-GYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKT------FVADAVVVAVPLGVLK----------ARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYGCSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLXIPV-----------DNLFFAGEATSMSYPGSVHGAFSTGLMAA 731
            GH   VR GY  V   L + LDIR+   V +I     GV+V  E  KT      + AD VV  + LGVLK          + T+KF+P LPDWK+ AI  LG G  NK+++ FD++FW PN    G V  T+            +   VL+ + AG  A  +E ++D+       + LK I  + S   P + +V+ W +D  + GSYSY +VG S   Y+ L  PV             LFFAGE T  +YP +VHGA+ +GL  A
Sbjct:  555 GHHTTVRNGYSCVPVALTENLDIRVNSAVKEIKYGTKGVEVVAENLKTSNSQMTYKADLVVCTLTLGVLKVAVAHKESQQSNTVKFDPPLPDWKQQAIKRLGFGNLNKVVLCFDRIFWDPNANLFGHVGSTTASRGEMFLFWSISSSPVLLALVAGMAANLVESVTDDIIIGRCMSVLKNIFGNTSVPQPKETVVTRWRSDPWARGSYSYVSVGSSGSDYDLLAAPVIPPSSKDAEGLPRLFFAGEHTIRNYPATVHGAYLSGLREA 821          
BLAST of FC873410 vs. ExPASy Swiss-Prot
Match: LDL3_ORYSI (Lysine-specific histone demethylase 1 homolog 3 OS=Oryza sativa subsp. indica GN=B0103C08-B0602B01.13 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.536e-31
Identity = 95/259 (36.68%), Postives = 135/259 (52.12%), Query Frame = 3
Query:   15 LPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW-PNVEFLG-VVSDTSYGCSYFLNLHKAT--GHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILP----DASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLXIPVDN--LFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLER 761
            LPGG+G +V+        LA+ + I     V  I     GV+V V GG+ +  D  +  VPLGVLK   +KF P LP  K  +I  LG G+ NK+ M F  VFW  +++  G +  D S+   +FL    AT  G  +L+ + AG+ A + E      A +     L+ I      +   P+Q + + WGTD+ SLGSYS+  VG S D Y+ L   V +  LFFAGEAT+  YP ++HGAF +GL  A +  +    R
Sbjct:  389 LPGGNGRLVQA-------LAENVPIVYERTVHTIRNGGDGVQVVVNGGQVYEGDMALCTVPLGVLKNGGVKFVPELPQRKLDSIKRLGFGLLNKVAMLFPHVFWSTDLDTFGHLTEDPSHRGEFFLFYSYATVAGGPLLMALVAGEAAHNFETTPPTDAVSSVLKILRGIYEPQGIEVPDPLQSVCTRWGTDSFSLGSYSHVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFISGLREAANITLHANAR 640          
BLAST of FC873410 vs. ExPASy Swiss-Prot
Match: LDL3_ORYSJ (Lysine-specific histone demethylase 1 homolog 3 OS=Oryza sativa subsp. japonica GN=Os04g0560300 PE=2 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 8.537e-31
Identity = 95/259 (36.68%), Postives = 136/259 (52.51%), Query Frame = 3
Query:   15 LPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW-PNVEFLG-VVSDTSYGCSYFLNLHKAT--GHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILP----DASSPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERLXIPVDN--LFFAGEATSMSYPGSVHGAFSTGLMAAEDCRMRVLER 761
            LPGG+G +V+       +LA+ + I     V  I     GV+V V GG+ +  D  +  VPLGVLK   +KF P LP  K  +I  LG G+ NK+ M F  VFW  +++  G +  D S+   +FL    AT  G  +L+ + AG+ A + E      A +     L+ I      +   P+Q + + WGTD+ SLGSYS+  VG S D Y+ L   V +  LFFAGEAT+  YP ++HGAF +GL  A +  +    R
Sbjct:  389 LPGGNGRLVQ-------SLAENVPIVYERTVHTIRYGGDGVQVVVNGGQVYEGDMALCTVPLGVLKNGGVKFVPELPQRKLDSIKRLGFGLLNKVAMLFPHVFWSTDLDTFGHLTEDPSHRGEFFLFYSYATVAGGPLLMALVAGEAAHNFETTPPTDAVSSVLKILRGIYEPQGIEVPDPLQSVCTRWGTDSFSLGSYSHVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFISGLREAANITLHANAR 640          
BLAST of FC873410 vs. ExPASy Swiss-Prot
Match: KDM1_MOUSE (Lysine-specific histone demethylase 1 OS=Mus musculus GN=Kdm1 PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 7.227e-30
Identity = 93/264 (35.23%), Postives = 136/264 (51.52%), Query Frame = 3
Query:   21 GGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGVLKAR--TIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYG---CSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERL-------------XIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAA 731
            G H  +  GY  V   LA+GLDI+L   V ++     G +V    T    +TF+   DAV+  +PLGVLK +   ++F P LP+WK +A+  +G G  NK+++ FD+VFW P+V   G V  T+        F NL+KA    +L+ + AG+ A  +E +SD+         LK I   ++   P + +VS W  D  + GSYSY   G S + Y+ +               P+  LFFAGE T  +YP +VHGA  +GL  A
Sbjct:  563 GSHLTVRNGYSCVPVALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAP---ILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 823          
BLAST of FC873410 vs. ExPASy Swiss-Prot
Match: KDM1_HUMAN (Lysine-specific histone demethylase 1 OS=Homo sapiens GN=KDM1 PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 7.227e-30
Identity = 93/264 (35.23%), Postives = 136/264 (51.52%), Query Frame = 3
Query:   21 GGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGVLKAR--TIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW-PNVEFLGVVSDTSYG---CSYFLNLHKATGHCVLVYMPAGQLARDIEKMSDEAAANFAFTQLKKILPDAS--SPIQYLVSHWGTDANSLGSYSYDTVGKSHDLYERL-------------XIPVDNLFFAGEATSMSYPGSVHGAFSTGLMAA 731
            G H  +  GY  V   LA+GLDI+L   V ++     G +V    T    +TF+   DAV+  +PLGVLK +   ++F P LP+WK +A+  +G G  NK+++ FD+VFW P+V   G V  T+        F NL+KA    +L+ + AG+ A  +E +SD+         LK I   ++   P + +VS W  D  + GSYSY   G S + Y+ +               P+  LFFAGE T  +YP +VHGA  +GL  A
Sbjct:  562 GSHLTVRNGYSCVPVALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAP---ILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREA 822          
The following BLAST results are available for this feature:
BLAST of FC873410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
PAO2_ARATH1.914e-12383.46Probable polyamine oxidase 2 OS=Arabidopsis thalia... [more]
PAO3_ARATH3.379e-12081.89Polyamine oxidase 3 OS=Arabidopsis thaliana GN=PAO... [more]
PAO4_ARATH7.341e-9163.39Probable polyamine oxidase 4 OS=Arabidopsis thalia... [more]
LDL2_ORYSJ4.836e-3438.15Lysine-specific histone demethylase 1 homolog 2 OS... [more]
LDL2_ARATH6.316e-3439.36Lysine-specific histone demethylase 1 homolog 2 OS... [more]
LSDA_DROME2.654e-3236.33Possible lysine-specific histone demethylase 1 OS=... [more]
LDL3_ORYSI6.536e-3136.68Lysine-specific histone demethylase 1 homolog 3 OS... [more]
LDL3_ORYSJ8.537e-3136.68Lysine-specific histone demethylase 1 homolog 3 OS... [more]
KDM1_MOUSE7.227e-3035.23Lysine-specific histone demethylase 1 OS=Mus muscu... [more]
KDM1_HUMAN7.227e-3035.23Lysine-specific histone demethylase 1 OS=Homo sapi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AH02FM1 AbsDev Citrus clementina cDNA clone KN0AAI3AH02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873410 ID=FC873410; Name=FC873410; organism=Citrus clementina; type=EST; length=765bp
TACAGGAAGAGCTGCTTCCTGGGGGTCATGGGCTTATGGTTCGGGGTTAC
CTACCGGTTATAAACACCCTTGCCAAAGGTCTTGACATTCGCTTAGGCCA
CAGGGTTACTAAAATAACAAGGCATTATATTGGAGTGAAGGTAACAGTAG
AAGGTGGAAAGACATTTGTTGCAGATGCTGTTGTTGTTGCTGTTCCTCTT
GGTGTGTTGAAGGCGAGAACCATCAAGTTTGAACCTAGGCTCCCTGACTG
GAAGGAAGCAGCCATTGATGACCTTGGTGTGGGCATTGAGAATAAAATAA
TAATGCATTTCGACAAAGTGTTTTGGCCAAATGTGGAGTTCTTGGGGGTG
GTTTCAGATACATCATATGGGTGCAGCTACTTTCTAAATCTTCACAAGGC
AACAGGTCACTGTGTCCTTGTTTACATGCCTGCCGGGCAGTTGGCTAGAG
ACATTGAGAAAATGTCCGATGAAGCTGCTGCTAATTTTGCTTTTACGCAA
CTCAAGAAGATCCTTCCTGATGCATCTTCCCCGATCCAATATCTTGTTTC
TCATTGGGGCACAGACGCCAACTCGCTTGGGTCCTACAGCTACGATACAG
TAGGCAAATCCCATGATCTGTATGAAAGGCTAANGATACCAGTGGACAAC
CTATTCTTTGCCGGCGAGGCAACAAGCATGAGCTACCCAGGGTCTGTTCA
TGGTGCATTCTCGACTGGACTGATGGCTGCCGAGGACTGCCGTATGCGTG
TTCTGGAGCGTTATG
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