FC873447

Overview
NameFC873447
Unique NameFC873447
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length588
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11453 contig Ccv1_Contig11453:66..653. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873447 vs. ExPASy Swiss-Prot
Match: Y5848_ARATH (Uncharacterized protein At5g48480 OS=Arabidopsis thaliana GN=At5g48480 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.378e-14
Identity = 43/80 (53.75%), Postives = 54/80 (67.50%), Query Frame = 3
Query:   63 NGAAPEKAPATVASFTGMKPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGSTFLVSDVS 302
            NGA P +   T   FT  K  LLVEA K  DAV FYK+AFGA+E G S+  KRK +QELP +  ++L +AGS+F+V DVS
Sbjct:   12 NGAGPVE---THLVFTEFKQMLLVEAQKVGDAVTFYKSAFGAIESGHSLYPKRKLDQELPHVLSSELNLAGSSFVVCDVS 88          
The following BLAST results are available for this feature:
BLAST of FC873447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5848_ARATH3.378e-1453.75Uncharacterized protein At5g48480 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI1CD01FM2 AbsDev Citrus clementina cDNA clone KN0AAI1CD01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873447 ID=FC873447; Name=FC873447; organism=Citrus clementina; type=EST; length=588bp
CTTTCCTTTGTCTCTAGACTCCAAAACTCTCTCGCTCAATGGCTGATGTC
CAGGAGGTTCAGAATGGAGCTGCGCCGGAGAAGGCTCCTGCTACCGTGGC
CAGCTTCACGGGGATGAAGCCGCAGTTGCTTGTGGAAGCACCGAAGGCTA
CTGACGCTGTTCAGTTCTACAAGACCGCGTTTGGTGCCGTGGAGATCGGC
CGTAGCGTGGAAACCAAACGCAAGGCTGAACAGGAGCTCCCACTCATCTC
CTGCGCTCAACTCGAGATTGCCGGCTCCACTTTCCTTGTCTCTGACGTTT
CCGGTGACTCTGCTGCGTACGTTTCTTGAACACTGAGTTTGTTTATGTTT
TTTTTATCAGATCTAGCTTTATGCTTAGAGTTTAATTGCTTTCCGTTGTT
GCATCTTGATGTTCTTTGAACATTCACGTACTTGAATCTGTACGTTGTTG
CTCGACTGTTCTTTTGTCTTTTGTTTTTAATTTTAAGATCTGTTTAAGTG
CTTGTTTTGTACTATTTTACTTGTTGGCTTGGCAATATTTTGTATAAAAT
ACATTTAACATTTATTTATAAAAAAAAAAAAAAAAAAA
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