FC873456

Overview
NameFC873456
Unique NameFC873456
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10168 contig Ccv1_Contig10168:1..620. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC873456 vs. ExPASy Swiss-Prot
Match: Y3453_DICDI (Uncharacterized protein DDB_G0273453/DDB_G0273565 OS=Dictyostelium discoideum GN=DDB_G0273453 PE=4 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 8.837e-34
Identity = 54/97 (55.67%), Postives = 76/97 (78.35%), Query Frame = 1 
Query:  226 ISPKQMAIEGFKAQSEMVIDSLDRLITAWEERNESVVVEGVHLSLNFVMGLMKKHPSIIPFMIYITNEHKHMERFAVRAKYMTLDPAKNKYVKYIPN 516
            +S K+  ++G++AQ+EM+ + LD LI  +E+R ES++VEGVHL    ++ L+KKHPS IPF++YI+NE KH ERFA+R+KYMTLDP +NKY KY  N
Sbjct:  321 LSHKEKILQGYEAQNEMIFNKLDILIGHYEKRKESLIVEGVHLDTKLILRLVKKHPSCIPFLMYISNEAKHKERFAIRSKYMTLDPHQNKYTKYFKN 417

HSP 2 Score: 43.1282 bits (100), Expect = 8.837e-34
Identity = 16/36 (44.44%), Postives = 28/36 (77.78%), Query Frame = 2 
Query:  509 FQIIITIQDYLCQRADKHLVPKINNTNVDKTVTPIH 616
            F+ I  I D+LC  AD+H++P+I+NT++D+++  IH
Sbjct:  415 FKNIRIINDHLCHGADEHMIPQIDNTSIDRSLATIH 450
The following BLAST results are available for this feature:
BLAST of FC873456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y3453_DICDI8.837e-3455.67Uncharacterized protein DDB_G0273453/DDB_G0273565 ... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAI1CD10FM2 AbsDev Citrus clementina cDNA clone KN0AAI1CD10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873456 ID=FC873456; Name=FC873456; organism=Citrus clementina; type=EST; length=620bp
ATGAGGATTTTTTTTTATTATATTTTTAAACCTCTACTCGGGGCTTCTAC
CGACCATGCGGGGGAGTTCTTGGACCCTGACCCAGCTGCAGAATCAAAGG
CTAAAAAGCACGCCATAAAATTGGCAGGTGCTGCACTTTCAGTTCCAAAG
GATGAAGCATCCAATAGTTCAGCAACTGGGAAATCCGATATCCGTCCAGA
GGTTGGTTCCAGTGCAGCTGAATTGATTAGTCCAAAGCAGATGGCTATTG
AAGGATTTAAGGCTCAAAGTGAGATGGTCATTGACAGCCTAGATCGACTG
ATTACTGCATGGGAAGAAAGGAATGAATCAGTTGTTGTTGAGGGTGTTCA
TTTAAGCCTGAATTTTGTGATGGGGCTTATGAAGAAACACCCATCAATCA
TACCTTTCATGATATACATCACAAATGAACATAAACACATGGAACGATTT
GCAGTCCGCGCAAAGTACATGACACTAGACCCAGCCAAAAATAAATATGT
CAAGTATATTCCAAATTATTATAACTATACAGGATTATCTCTGTCAGCGG
GCTGACAAGCATCTGGTCCCCAAAATAAACAATACTAATGTTGACAAGAC
TGTAACCCCCATCCATGCAA
back to top