FC873469
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC873469 vs. ExPASy Swiss-Prot
Match: LMBD2_ARATH (LIMR family protein At5g01460 OS=Arabidopsis thaliana GN=At5g01460 PE=2 SV=1) HSP 1 Score: 339.347 bits (869), Expect = 1.028e-95 Identity = 168/228 (73.68%), Postives = 185/228 (81.14%), Query Frame = 1 Query: 103 MGDFNXXXXXXXXXXXXXXXXXNVYLLVNYQHPDDANQAYFPKFVVVLGLSVAAISILMLPADVANRQACRHAIYNGACNLTLPMKDLWLAVYILDAVLVFFVIPFAMFYYEGDQDKSVGKRIKSALIWVIMTAIVCALVLGILYGLVGKVDFTVRHLSSTTTNFPTSWEFXXXXXXXXXXXXXXXSAYLANETSEKTWTMRTTFPEYVVALATIVGSVLFSIFGWCG 786 MGDFN ++YLLVNYQHPDDANQAYFPKFVVV GLS+A ISILMLPADVANR ACRH+IYNGACNLTLPMKDLWLAVYI+DAVLVFF+IPFAMF+YEGDQDK++GKRIKSALIWV+ TA+VCALVLGILYG++GKVDF+VRHLSS TT FPTSW+F SAY AN SEKTW+MRTTFPEYVVALATIVGSVLF+IFG G Sbjct: 1 MGDFNLALVIVAIVVCVIVFISSIYLLVNYQHPDDANQAYFPKFVVVFGLSIAMISILMLPADVANRHACRHSIYNGACNLTLPMKDLWLAVYIVDAVLVFFIIPFAMFFYEGDQDKALGKRIKSALIWVVTTAVVCALVLGILYGVIGKVDFSVRHLSSATTTFPTSWQF-SNNQPCIGNTARQCSAYTANAASEKTWSMRTTFPEYVVALATIVGSVLFTIFGGVG 227 HSP 2 Score: 32.3426 bits (72), Expect = 1.028e-95 Identity = 14/17 (82.35%), Postives = 14/17 (82.35%), Query Frame = 2 Query: 764 FRYLGGVGIACLPLGLI 814 F GGVGIACLPLGLI Sbjct: 220 FTIFGGVGIACLPLGLI 236
BLAST of FC873469 vs. ExPASy Swiss-Prot
Match: LMBD1_ARATH (LIMR family protein At3g08930 OS=Arabidopsis thaliana GN=At3g08930 PE=2 SV=2) HSP 1 Score: 339.347 bits (869), Expect = 1.028e-95 Identity = 167/228 (73.25%), Postives = 186/228 (81.58%), Query Frame = 1 Query: 103 MGDFNXXXXXXXXXXXXXXXXXNVYLLVNYQHPDDANQAYFPKFVVVLGLSVAAISILMLPADVANRQACRHAIYNGACNLTLPMKDLWLAVYILDAVLVFFVIPFAMFYYEGDQDKSVGKRIKSALIWVIMTAIVCALVLGILYGLVGKVDFTVRHLSSTTTNFPTSWEFXXXXXXXXXXXXXXXSAYLANETSEKTWTMRTTFPEYVVALATIVGSVLFSIFGWCG 786 MGDFN ++YLLVNYQHPDDANQAYFPKFVVV GLS+A ISILMLPADVANR ACRHAIYNGACNLTLPMKDLWLA+YI+DA+LVFFVIPFAMF+YEGDQDK++GKRIKSALIWV+ TA+VCALVLGILYG++GKVDF+VRHL+S T+ FPTSW+F SA+ AN TSEKTWTMRTTFPEYVVALATIVGSVLF+IFG G Sbjct: 1 MGDFNLALVIVAIVVCVIVFISSIYLLVNYQHPDDANQAYFPKFVVVFGLSIAMISILMLPADVANRHACRHAIYNGACNLTLPMKDLWLAIYIVDAILVFFVIPFAMFFYEGDQDKTLGKRIKSALIWVVTTAVVCALVLGILYGVIGKVDFSVRHLASATSTFPTSWQF-SNTQPCIGNTARQCSAFTANPTSEKTWTMRTTFPEYVVALATIVGSVLFTIFGGVG 227 HSP 2 Score: 32.3426 bits (72), Expect = 1.028e-95 Identity = 14/17 (82.35%), Postives = 14/17 (82.35%), Query Frame = 2 Query: 764 FRYLGGVGIACLPLGLI 814 F GGVGIACLPLGLI Sbjct: 220 FTIFGGVGIACLPLGLI 236
BLAST of FC873469 vs. ExPASy Swiss-Prot
Match: LMBD1_ORYSJ (LIMR family protein Os06g0128200 OS=Oryza sativa subsp. japonica GN=Os06g0128200 PE=2 SV=1) HSP 1 Score: 307.76 bits (787), Expect = 3.013e-86 Identity = 155/228 (67.98%), Postives = 172/228 (75.44%), Query Frame = 1 Query: 103 MGDFNXXXXXXXXXXXXXXXXXNVYLLVNYQHPDDANQAYFPKFVVVLGLSVAAISILMLPADVANRQACRHAIYNGACNLTLPMKDLWLAVYILDAVLVFFVIPFAMFYYEGDQDKSVGKRIKSALIWVIMTAIVCALVLGILYGLVGKVDFTVRHLSSTTTNFPTSWEFXXXXXXXXXXXXXXXSAYLANETSEKTWTMRTTFPEYVVALATIVGSVLFSIFGWCG 786 MGDFN +VYLL+NYQHPDDANQAYFPK VVVLG++VA +SILMLPADVANRQACR AIY+GAC+LTLPMK LWLAVYI DAVLVF VIPFAMFYYEGDQDKSVGKR+ SAL+WV ++A+VC L+LGILYGLVGKVDFTVRHLSS FP S+ +AY A S+ TWTMR TFPEYVVALATIVGSVLF+IFG G Sbjct: 1 MGDFNVALVIVAAVVSVLVLLVSVYLLINYQHPDDANQAYFPKLVVVLGITVALLSILMLPADVANRQACRRAIYSGACSLTLPMKTLWLAVYIADAVLVFLVIPFAMFYYEGDQDKSVGKRLTSALLWVAVSAVVCGLILGILYGLVGKVDFTVRHLSSAVETFPNSFTSFSTGQPCISTSPKQCAAYTAPANSQTTWTMRATFPEYVVALATIVGSVLFTIFGGVG 228 HSP 2 Score: 32.3426 bits (72), Expect = 3.013e-86 Identity = 14/17 (82.35%), Postives = 14/17 (82.35%), Query Frame = 2 Query: 764 FRYLGGVGIACLPLGLI 814 F GGVGIACLPLGLI Sbjct: 221 FTIFGGVGIACLPLGLI 237
BLAST of FC873469 vs. ExPASy Swiss-Prot
Match: Y3610_DICDI (LIMR family protein DDB_G0293610 OS=Dictyostelium discoideum GN=DDB_G0293610 PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.877e-19 Identity = 52/128 (40.62%), Postives = 73/128 (57.03%), Query Frame = 1 Query: 169 NVYLLVNYQHPDDANQAYFPKFVVVLGLSVAAISILMLPADVANRQACRHAIYNGACNLTLPMKDLWLAVYILDAVLVFFVIPFAMFYYEGDQ-DKSVGKRIKSALIWVIMTAIVCALVLGILYGLVG 549 ++YL+ +QHPDD N AYFPK +V+LG+++AA SILMLP DVAN+ G PM LW+ +YI+ AV + PFAMF+YE ++ D + G +I A A + +LY G Sbjct: 21 SLYLIAYFQHPDDKNVAYFPKIIVILGITLAATSILMLPLDVANQGG------KGG----FPMDILWIVIYIVVAVFAIVICPFAMFFYESEEADPAAGSQIAGAFKGTFAILFAFAALTIVLYVFFG 138
BLAST of FC873469 vs. ExPASy Swiss-Prot
Match: Y3707_DICDI (LIMR family protein DDB_G0283707 OS=Dictyostelium discoideum GN=DDB_G0283707 PE=3 SV=2) HSP 1 Score: 93.9745 bits (232), Expect = 1.093e-18 Identity = 52/129 (40.31%), Postives = 74/129 (57.36%), Query Frame = 1 Query: 169 NVYLLVNYQHPDDANQAYFPKFVVVLGLSVAAISILMLPADVANRQACRHAIYNGACNLTLPMKDLWLAVYILDAVLVFFVIPFAMFYYEGDQ-DKSVGKRIKSAL---IWVIMTAIVCALVLGILYGL 543 ++YL+ +QHPDD N AYFPK +V+LGL++AA SILMLP DVAN +G PM LW+ +YI AV + PFAMF+YE ++ D G +I A ++ +VL + +G+ Sbjct: 21 SLYLIAYFQHPDDKNVAYFPKIIVILGLTLAATSILMLPLDVAN---------DGGSG-GFPMDILWIIIYIAVAVFAVVICPFAMFFYESEEADPGAGSQIAGAFKGTFAILFAFTALTIVLYVFFGV 139 The following BLAST results are available for this feature:
BLAST of FC873469 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC873469 ID=FC873469; Name=FC873469; organism=Citrus clementina; type=EST; length=816bpback to top |