FC873469

Overview
NameFC873469
Unique NameFC873469
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length816
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14024 contig Ccv1_Contig14024:218..1031. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873469 vs. ExPASy Swiss-Prot
Match: LMBD2_ARATH (LIMR family protein At5g01460 OS=Arabidopsis thaliana GN=At5g01460 PE=2 SV=1)

HSP 1 Score: 339.347 bits (869), Expect = 1.028e-95
Identity = 168/228 (73.68%), Postives = 185/228 (81.14%), Query Frame = 1
Query:  103 MGDFNXXXXXXXXXXXXXXXXXNVYLLVNYQHPDDANQAYFPKFVVVLGLSVAAISILMLPADVANRQACRHAIYNGACNLTLPMKDLWLAVYILDAVLVFFVIPFAMFYYEGDQDKSVGKRIKSALIWVIMTAIVCALVLGILYGLVGKVDFTVRHLSSTTTNFPTSWEFXXXXXXXXXXXXXXXSAYLANETSEKTWTMRTTFPEYVVALATIVGSVLFSIFGWCG 786
            MGDFN                 ++YLLVNYQHPDDANQAYFPKFVVV GLS+A ISILMLPADVANR ACRH+IYNGACNLTLPMKDLWLAVYI+DAVLVFF+IPFAMF+YEGDQDK++GKRIKSALIWV+ TA+VCALVLGILYG++GKVDF+VRHLSS TT FPTSW+F               SAY AN  SEKTW+MRTTFPEYVVALATIVGSVLF+IFG  G
Sbjct:    1 MGDFNLALVIVAIVVCVIVFISSIYLLVNYQHPDDANQAYFPKFVVVFGLSIAMISILMLPADVANRHACRHSIYNGACNLTLPMKDLWLAVYIVDAVLVFFIIPFAMFFYEGDQDKALGKRIKSALIWVVTTAVVCALVLGILYGVIGKVDFSVRHLSSATTTFPTSWQF-SNNQPCIGNTARQCSAYTANAASEKTWSMRTTFPEYVVALATIVGSVLFTIFGGVG 227          

HSP 2 Score: 32.3426 bits (72), Expect = 1.028e-95
Identity = 14/17 (82.35%), Postives = 14/17 (82.35%), Query Frame = 2
Query:  764 FRYLGGVGIACLPLGLI 814
            F   GGVGIACLPLGLI
Sbjct:  220 FTIFGGVGIACLPLGLI 236          
BLAST of FC873469 vs. ExPASy Swiss-Prot
Match: LMBD1_ARATH (LIMR family protein At3g08930 OS=Arabidopsis thaliana GN=At3g08930 PE=2 SV=2)

HSP 1 Score: 339.347 bits (869), Expect = 1.028e-95
Identity = 167/228 (73.25%), Postives = 186/228 (81.58%), Query Frame = 1
Query:  103 MGDFNXXXXXXXXXXXXXXXXXNVYLLVNYQHPDDANQAYFPKFVVVLGLSVAAISILMLPADVANRQACRHAIYNGACNLTLPMKDLWLAVYILDAVLVFFVIPFAMFYYEGDQDKSVGKRIKSALIWVIMTAIVCALVLGILYGLVGKVDFTVRHLSSTTTNFPTSWEFXXXXXXXXXXXXXXXSAYLANETSEKTWTMRTTFPEYVVALATIVGSVLFSIFGWCG 786
            MGDFN                 ++YLLVNYQHPDDANQAYFPKFVVV GLS+A ISILMLPADVANR ACRHAIYNGACNLTLPMKDLWLA+YI+DA+LVFFVIPFAMF+YEGDQDK++GKRIKSALIWV+ TA+VCALVLGILYG++GKVDF+VRHL+S T+ FPTSW+F               SA+ AN TSEKTWTMRTTFPEYVVALATIVGSVLF+IFG  G
Sbjct:    1 MGDFNLALVIVAIVVCVIVFISSIYLLVNYQHPDDANQAYFPKFVVVFGLSIAMISILMLPADVANRHACRHAIYNGACNLTLPMKDLWLAIYIVDAILVFFVIPFAMFFYEGDQDKTLGKRIKSALIWVVTTAVVCALVLGILYGVIGKVDFSVRHLASATSTFPTSWQF-SNTQPCIGNTARQCSAFTANPTSEKTWTMRTTFPEYVVALATIVGSVLFTIFGGVG 227          

HSP 2 Score: 32.3426 bits (72), Expect = 1.028e-95
Identity = 14/17 (82.35%), Postives = 14/17 (82.35%), Query Frame = 2
Query:  764 FRYLGGVGIACLPLGLI 814
            F   GGVGIACLPLGLI
Sbjct:  220 FTIFGGVGIACLPLGLI 236          
BLAST of FC873469 vs. ExPASy Swiss-Prot
Match: LMBD1_ORYSJ (LIMR family protein Os06g0128200 OS=Oryza sativa subsp. japonica GN=Os06g0128200 PE=2 SV=1)

HSP 1 Score: 307.76 bits (787), Expect = 3.013e-86
Identity = 155/228 (67.98%), Postives = 172/228 (75.44%), Query Frame = 1
Query:  103 MGDFNXXXXXXXXXXXXXXXXXNVYLLVNYQHPDDANQAYFPKFVVVLGLSVAAISILMLPADVANRQACRHAIYNGACNLTLPMKDLWLAVYILDAVLVFFVIPFAMFYYEGDQDKSVGKRIKSALIWVIMTAIVCALVLGILYGLVGKVDFTVRHLSSTTTNFPTSWEFXXXXXXXXXXXXXXXSAYLANETSEKTWTMRTTFPEYVVALATIVGSVLFSIFGWCG 786
            MGDFN                 +VYLL+NYQHPDDANQAYFPK VVVLG++VA +SILMLPADVANRQACR AIY+GAC+LTLPMK LWLAVYI DAVLVF VIPFAMFYYEGDQDKSVGKR+ SAL+WV ++A+VC L+LGILYGLVGKVDFTVRHLSS    FP S+                 +AY A   S+ TWTMR TFPEYVVALATIVGSVLF+IFG  G
Sbjct:    1 MGDFNVALVIVAAVVSVLVLLVSVYLLINYQHPDDANQAYFPKLVVVLGITVALLSILMLPADVANRQACRRAIYSGACSLTLPMKTLWLAVYIADAVLVFLVIPFAMFYYEGDQDKSVGKRLTSALLWVAVSAVVCGLILGILYGLVGKVDFTVRHLSSAVETFPNSFTSFSTGQPCISTSPKQCAAYTAPANSQTTWTMRATFPEYVVALATIVGSVLFTIFGGVG 228          

HSP 2 Score: 32.3426 bits (72), Expect = 3.013e-86
Identity = 14/17 (82.35%), Postives = 14/17 (82.35%), Query Frame = 2
Query:  764 FRYLGGVGIACLPLGLI 814
            F   GGVGIACLPLGLI
Sbjct:  221 FTIFGGVGIACLPLGLI 237          
BLAST of FC873469 vs. ExPASy Swiss-Prot
Match: Y3610_DICDI (LIMR family protein DDB_G0293610 OS=Dictyostelium discoideum GN=DDB_G0293610 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.877e-19
Identity = 52/128 (40.62%), Postives = 73/128 (57.03%), Query Frame = 1
Query:  169 NVYLLVNYQHPDDANQAYFPKFVVVLGLSVAAISILMLPADVANRQACRHAIYNGACNLTLPMKDLWLAVYILDAVLVFFVIPFAMFYYEGDQ-DKSVGKRIKSALIWVIMTAIVCALVLGILYGLVG 549
            ++YL+  +QHPDD N AYFPK +V+LG+++AA SILMLP DVAN+         G      PM  LW+ +YI+ AV    + PFAMF+YE ++ D + G +I  A           A +  +LY   G
Sbjct:   21 SLYLIAYFQHPDDKNVAYFPKIIVILGITLAATSILMLPLDVANQGG------KGG----FPMDILWIVIYIVVAVFAIVICPFAMFFYESEEADPAAGSQIAGAFKGTFAILFAFAALTIVLYVFFG 138          
BLAST of FC873469 vs. ExPASy Swiss-Prot
Match: Y3707_DICDI (LIMR family protein DDB_G0283707 OS=Dictyostelium discoideum GN=DDB_G0283707 PE=3 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 1.093e-18
Identity = 52/129 (40.31%), Postives = 74/129 (57.36%), Query Frame = 1
Query:  169 NVYLLVNYQHPDDANQAYFPKFVVVLGLSVAAISILMLPADVANRQACRHAIYNGACNLTLPMKDLWLAVYILDAVLVFFVIPFAMFYYEGDQ-DKSVGKRIKSAL---IWVIMTAIVCALVLGILYGL 543
            ++YL+  +QHPDD N AYFPK +V+LGL++AA SILMLP DVAN         +G      PM  LW+ +YI  AV    + PFAMF+YE ++ D   G +I  A      ++       +VL + +G+
Sbjct:   21 SLYLIAYFQHPDDKNVAYFPKIIVILGLTLAATSILMLPLDVAN---------DGGSG-GFPMDILWIIIYIAVAVFAVVICPFAMFFYESEEADPGAGSQIAGAFKGTFAILFAFTALTIVLYVFFGV 139          
The following BLAST results are available for this feature:
BLAST of FC873469 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
LMBD2_ARATH1.028e-9573.68LIMR family protein At5g01460 OS=Arabidopsis thali... [more]
LMBD1_ARATH1.028e-9573.25LIMR family protein At3g08930 OS=Arabidopsis thali... [more]
LMBD1_ORYSJ3.013e-8667.98LIMR family protein Os06g0128200 OS=Oryza sativa s... [more]
Y3610_DICDI2.877e-1940.63LIMR family protein DDB_G0293610 OS=Dictyostelium ... [more]
Y3707_DICDI1.093e-1840.31LIMR family protein DDB_G0283707 OS=Dictyostelium ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI3BA12FM1 AbsDev Citrus clementina cDNA clone KN0AAI3BA12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873469 ID=FC873469; Name=FC873469; organism=Citrus clementina; type=EST; length=816bp
AAAAAACAAAAAAAAAAGGACCAGATCTACACAAAATTTGCTGAAACCCT
AATTCGTGCGATCCGTCGTTTTGATCGGAATCGAGAGAGAGGTTAAAACA
AAATGGGTGATTTTAACCTCGCTCTGGTGATCGTCGCGATAGTGGTGTGC
GTTTTGGTATTCATTTTCAATGTCTATCTTCTCGTTAACTACCAGCATCC
CGACGACGCCAACCAGGCGTATTTTCCGAAATTCGTCGTCGTTTTGGGGC
TTTCCGTTGCCGCTATTTCAATTCTTATGTTGCCGGCTGACGTGGCCAAT
CGGCAGGCGTGTAGGCACGCGATTTATAATGGCGCCTGTAATCTCACCTT
GCCGATGAAGGATCTTTGGCTTGCTGTCTATATTCTCGATGCGGTGCTTG
TTTTCTTCGTTATTCCGTTCGCAATGTTCTATTACGAAGGCGACCAGGAT
AAGAGTGTGGGCAAAAGGATTAAGAGCGCTTTAATTTGGGTGATTATGAC
GGCTATTGTCTGTGCCCTTGTGCTTGGCATTTTGTATGGTCTAGTTGGGA
AGGTTGACTTCACTGTTAGACACCTCTCTTCAACTACTACTAATTTTCCG
ACTTCTTGGGAGTTCTCTGGTGGTCAACAATGTGTTGGTGGAAGTGGCGT
ACACCAGTGTTCGGCATATTTAGCAAATGAAACATCAGAAAAAACATGGA
CGATGCGCACCACCTTCCCAGAATATGTTGTTGCTCTAGCTACAATTGTT
GGATCAGTACTTTTTTCGATATTTGGGTGGTGTGGGTATTGCTTGTTTGC
CACTTGGACTTATCTT
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