FC873472

Overview
NameFC873472
Unique NameFC873472
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length801
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1116 contig Ccv1_Contig1116:2..802. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC873472 vs. ExPASy Swiss-Prot
Match: PHF1_ARATH (SEC12-like protein 1 OS=Arabidopsis thaliana GN=PHF1 PE=2 SV=2)

HSP 1 Score: 209.534 bits (532), Expect = 5.841e-65
Identity = 98/162 (60.49%), Postives = 128/162 (79.01%), Query Frame = 2 
Query:  212 GTVTCGSWIKRPENVNLVVLGKSSR----ASSSPSVLEIFSFDPKTTSVYTSPLVTYVFDESEGDPMTIAVNPSGDDFVCSTTNGGCKLFEVYGGATDINLLAKKMPPLQDAGPQKCLSFSVDGSRFAAGGVDGHLRIMHWPSLRIILDEPKAHKSVLDMDF 685
            G V CGSWI+RP+ VN V++ K+S+    + SSP++L IFSFDP T S+ +SPL T+   +S+GDP+ ++V+P GD FVCST+ GGCKLFE+ GGAT I +LAK++ PLQ+AG QKC++FS DGS+ A GGVDG LRIM WP+L +ILDEPKAHKS+ DMDF
Sbjct:   11 GHVVCGSWIRRPKKVNWVLIAKASKRRGSSVSSPALLNIFSFDPITASLSSSPLATHTLKDSDGDPVAVSVHPGGDYFVCSTSKGGCKLFELVGGATGITILAKELLPLQNAGLQKCMAFSFDGSKLAVGGVDGCLRIMEWPNLSVILDEPKAHKSIRDMDF 172

HSP 2 Score: 60.077 bits (144), Expect = 5.841e-65
Identity = 29/41 (70.73%), Postives = 33/41 (80.49%), Query Frame = 3 
Query:  678 WTLDSEFLATTSTDGSARIWKTEDGVAWTFLXRNSDEKIEL 800
            ++LDSEFLATTSTDGSARIWK EDG   + L R+ DE IEL
Sbjct:  172 FSLDSEFLATTSTDGSARIWKAEDGFPLSTLERSGDENIEL 212
The following BLAST results are available for this feature:
BLAST of FC873472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PHF1_ARATH5.841e-6560.49SEC12-like protein 1 OS=Arabidopsis thaliana GN=PH... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI1CE03FM2 AbsDev Citrus clementina cDNA clone KN0AAI1CE03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873472 ID=FC873472; Name=FC873472; organism=Citrus clementina; type=EST; length=801bp
AAAAGCATAACACAAGGCGAAACCAAAAAACTTTTCGCGGAAAGCGAAAA
AATTGTCCGCGTTTTCGACTATAAAACCAGCAAAAGCCCCCTCATCTTCC
TCCATTGACTCTGTTTCCAGTTCCCACTTCAAAAACAAAACCCCCAAAAA
AAAAAGTTTTTGTTATTCAAACTCAAATTTATTTCATCAATCAATTAAAA
TGGAGGGTGGTGGTACCGTGACATGCGGGTCGTGGATCAAGCGACCCGAG
AACGTGAATTTGGTTGTGTTGGGCAAGTCCAGCCGGGCCAGTTCATCCCC
CTCAGTGCTTGAAATTTTCTCCTTTGATCCCAAAACAACCTCTGTCTACA
CTTCCCCTTTGGTTACTTATGTGTTTGATGAAAGCGAAGGCGATCCCATG
ACAATTGCTGTGAACCCGAGTGGTGATGACTTTGTTTGCTCCACAACTAA
TGGTGGCTGCAAATTGTTTGAGGTATATGGTGGAGCAACAGATATAAATT
TACTGGCCAAGAAAATGCCTCCTCTCCAAGACGCTGGCCCACAAAAATGC
CTATCCTTCAGTGTGGATGGATCCAGATTTGCTGCTGGTGGAGTGGATGG
GCATCTCAGAATAATGCATTGGCCAAGCCTGCGCATCATTTTAGATGAAC
CAAAAGCACACAAGTCTGTGTTGGATATGGACTTTAGATTCAGAGTTTTT
GGCTACAACTTCTACTGATGGTTCTGCTAGAATATGGAAAACAGAAGATG
GTGTTGCTTGGACTTTCTTANCTCGCAACTCGGATGAGAAGATTGAGTTA
T
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