FC873483

Overview
NameFC873483
Unique NameFC873483
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length453
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC873483 vs. ExPASy Swiss-Prot
Match: DICER_ARATH (Endoribonuclease Dicer homolog OS=Arabidopsis thaliana GN=CAF PE=1 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 9.189e-43
Identity = 84/116 (72.41%), Postives = 93/116 (80.17%), Query Frame = 2 
Query:    2 LKEIETAEAKEKGDENGK-----------KRKNGTQTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNKWYS 316
            LKE E AE+KEK   NG             +KNG Q FTRQTLNDICLR+NWPMP YRCV+EGGPAHAKRFT+ VRVNT+D+GWTDEC+GEPMPSVKKAKDSAAVLLLELLNK +S
Sbjct: 1794 LKEKEIAESKEKHINNGNAGEDQGENENGNKKNGHQPFTRQTLNDICLRKNWPMPSYRCVKEGGPAHAKRFTFGVRVNTSDRGWTDECIGEPMPSVKKAKDSAAVLLLELLNKTFS 1909
[Close]
BLAST of FC873483 vs. ExPASy Swiss-Prot
Match: DCL1_ORYSJ (Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp. japonica GN=DCL1 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 5.956e-42
Identity = 81/102 (79.41%), Postives = 88/102 (86.27%), Query Frame = 2 
Query:    2 LKEIETAEAKEKGDENGKKRKNGTQTFTRQTLNDICLRRNWPMPLYRCVREGGPAHAKRFTYAVRVNTTDKGWTDECVGEPMPSVKKAKDSAAVLLLELLNK 307
            LKE ETA  KE  DE   ++KNG Q FTRQTLNDICLRR WPMP YRCV EGGPAHAKRF Y+VRVNT+D+GWTDEC+GEPMPSVKKAKDSAAVLLLELLN+
Sbjct: 1773 LKEKETATKKE--DERDGEKKNGAQMFTRQTLNDICLRRQWPMPQYRCVNEGGPAHAKRFVYSVRVNTSDRGWTDECIGEPMPSVKKAKDSAAVLLLELLNR 1872
The following BLAST results are available for this feature:
BLAST of FC873483 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
DICER_ARATH9.189e-4372.41Endoribonuclease Dicer homolog OS=Arabidopsis thal... [more]
DCL1_ORYSJ5.956e-4279.41Endoribonuclease Dicer homolog 1 OS=Oryza sativa s... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI3BB02FM1 AbsDev Citrus clementina cDNA clone KN0AAI3BB02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873483 ID=FC873483; Name=FC873483; organism=Citrus clementina; type=EST; length=453bp
TTTGAAGGAGATTGAAACAGCTGAAGCCAAGGAGAAAGGTGATGAGAATG
GGAAGAAGAGGAAAAATGGCACCCAAACATTTACAAGGCAAACTCTCAAT
GATATCTGTTTGCGTAGAAATTGGCCTATGCCTTTGTATCGGTGTGTGCG
TGAGGGTGGTCCGGCACATGCAAAGAGGTTCACTTATGCTGTTCGTGTGA
ATACCACTGATAAGGGATGGACGGATGAGTGCGTAGGAGAGCCAATGCCT
AGTGTCAAAAAGGCGAAGGACTCTGCGGCAGTTCTTCTTCTGGAACTTCT
GAATAAATGGTACTCATAATGGGAATGAAAAGATTTATACATTGTAACCA
AATTGTAACCAATTCTTGCAAAATTAAAATGTGGTATGTCATCATTCATC
AAAGCAAGCAGTTATTTATGGAACAAAAAAAAAAAAAAAAAAAAAAAAAA
AAA
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