FC873486

Overview
NameFC873486
Unique NameFC873486
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length762
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1223 contig Ccv1_Contig1223:1..762. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873486 vs. ExPASy Swiss-Prot
Match: CLH2_HUMAN (Clathrin heavy chain 2 OS=Homo sapiens GN=CLTCL1 PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 6.716e-28
Identity = 53/90 (58.89%), Postives = 74/90 (82.22%), Query Frame = 2
Query:    2 SIALSKKDKVYKDAMETASQSGDRELAEELLVFFIEQGKKECFASCLFVCYDLIRPDVALELSWMNNMIDFAFPYLLQFIREYTGKVDEL 271
            S+ L KKD +YKDAM+ A++S D ELA++LL +F+E+GK+ECFA+CLF CYDL+RPD+ LEL+W +N++D A PY +Q +REY  KVD+L
Sbjct: 1524 SVELCKKDHLYKDAMQHAAESRDAELAQKLLQWFLEEGKRECFAACLFTCYDLLRPDMVLELAWRHNLVDLAMPYFIQVMREYLSKVDKL 1613          
BLAST of FC873486 vs. ExPASy Swiss-Prot
Match: CLH_RAT (Clathrin heavy chain 1 OS=Rattus norvegicus GN=Cltc PE=1 SV=3)

HSP 1 Score: 121.324 bits (303), Expect = 5.685e-27
Identity = 53/90 (58.89%), Postives = 72/90 (80.00%), Query Frame = 2
Query:    2 SIALSKKDKVYKDAMETASQSGDRELAEELLVFFIEQGKKECFASCLFVCYDLIRPDVALELSWMNNMIDFAFPYLLQFIREYTGKVDEL 271
            S+ L KKD +YKDAM+ AS+S D ELAEELL +F+++ K+ECF +CLF CYDL+RPDV LE +W +N++DFA PY +Q ++EY  KVD+L
Sbjct: 1524 SVELCKKDSLYKDAMQYASESKDTELAEELLQWFLQEEKRECFGACLFTCYDLLRPDVVLETAWRHNIMDFAMPYFIQVMKEYLTKVDKL 1613          
BLAST of FC873486 vs. ExPASy Swiss-Prot
Match: CLH_MOUSE (Clathrin heavy chain 1 OS=Mus musculus GN=Cltc PE=1 SV=3)

HSP 1 Score: 121.324 bits (303), Expect = 5.685e-27
Identity = 53/90 (58.89%), Postives = 72/90 (80.00%), Query Frame = 2
Query:    2 SIALSKKDKVYKDAMETASQSGDRELAEELLVFFIEQGKKECFASCLFVCYDLIRPDVALELSWMNNMIDFAFPYLLQFIREYTGKVDEL 271
            S+ L KKD +YKDAM+ AS+S D ELAEELL +F+++ K+ECF +CLF CYDL+RPDV LE +W +N++DFA PY +Q ++EY  KVD+L
Sbjct: 1524 SVELCKKDSLYKDAMQYASESKDTELAEELLQWFLQEEKRECFGACLFTCYDLLRPDVVLETAWRHNIMDFAMPYFIQVMKEYLTKVDKL 1613          
BLAST of FC873486 vs. ExPASy Swiss-Prot
Match: CLH1_HUMAN (Clathrin heavy chain 1 OS=Homo sapiens GN=CLTC PE=1 SV=5)

HSP 1 Score: 121.324 bits (303), Expect = 5.685e-27
Identity = 53/90 (58.89%), Postives = 72/90 (80.00%), Query Frame = 2
Query:    2 SIALSKKDKVYKDAMETASQSGDRELAEELLVFFIEQGKKECFASCLFVCYDLIRPDVALELSWMNNMIDFAFPYLLQFIREYTGKVDEL 271
            S+ L KKD +YKDAM+ AS+S D ELAEELL +F+++ K+ECF +CLF CYDL+RPDV LE +W +N++DFA PY +Q ++EY  KVD+L
Sbjct: 1524 SVELCKKDSLYKDAMQYASESKDTELAEELLQWFLQEEKRECFGACLFTCYDLLRPDVVLETAWRHNIMDFAMPYFIQVMKEYLTKVDKL 1613          
BLAST of FC873486 vs. ExPASy Swiss-Prot
Match: CLH1_BOVIN (Clathrin heavy chain 1 OS=Bos taurus GN=CLTC PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.685e-27
Identity = 53/90 (58.89%), Postives = 72/90 (80.00%), Query Frame = 2
Query:    2 SIALSKKDKVYKDAMETASQSGDRELAEELLVFFIEQGKKECFASCLFVCYDLIRPDVALELSWMNNMIDFAFPYLLQFIREYTGKVDEL 271
            S+ L KKD +YKDAM+ AS+S D ELAEELL +F+++ K+ECF +CLF CYDL+RPDV LE +W +N++DFA PY +Q ++EY  KVD+L
Sbjct: 1524 SVELCKKDSLYKDAMQYASESKDTELAEELLQWFLQEEKRECFGACLFTCYDLLRPDVVLETAWRHNIMDFAMPYFIQVMKEYLTKVDKL 1613          
BLAST of FC873486 vs. ExPASy Swiss-Prot
Match: CLH_DROME (Clathrin heavy chain OS=Drosophila melanogaster GN=Chc PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.654e-26
Identity = 53/90 (58.89%), Postives = 74/90 (82.22%), Query Frame = 2
Query:    2 SIALSKKDKVYKDAMETASQSGDRELAEELLVFFIEQGKKECFASCLFVCYDLIRPDVALELSWMNNMIDFAFPYLLQFIREYTGKVDEL 271
            S+ L KKDK+YKDAME A++S  +++AEELL +F+E+   +CFA+CL+ CYDL+RPDV LEL+W + ++DFA PYL+Q +REYT KVD+L
Sbjct: 1525 SVELCKKDKLYKDAMEYAAESCKQDIAEELLGWFLERDAYDCFAACLYQCYDLLRPDVILELAWKHKIVDFAMPYLIQVLREYTTKVDKL 1614          
BLAST of FC873486 vs. ExPASy Swiss-Prot
Match: CLH_DICDI (Clathrin heavy chain OS=Dictyostelium discoideum GN=chcA PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.822e-26
Identity = 48/93 (51.61%), Postives = 74/93 (79.57%), Query Frame = 2
Query:    2 SIALSKKDKVYKDAMETASQSGDRELAEELLVFFIEQGKKECFASCLFVCYDLIRPDVALELSWMNNMIDFAFPYLLQFIREYTGKVDELVKD 280
            S+ LSKKDK+YKDA+++AS S +  + EELL +F++Q     FA+CL+ CYD ++PD  +EL+W NN+++++FPYL+Q+++EYT KVD+LV D
Sbjct: 1525 SVELSKKDKLYKDAIQSASDSKNPAIGEELLQYFVDQQNNSAFAACLYTCYDFLKPDAVIELAWRNNILNYSFPYLIQYVKEYTTKVDQLVDD 1617          
BLAST of FC873486 vs. ExPASy Swiss-Prot
Match: CLH_CAEEL (Probable clathrin heavy chain 1 OS=Caenorhabditis elegans GN=chc-1 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.449e-22
Identity = 47/96 (48.96%), Postives = 74/96 (77.08%), Query Frame = 2
Query:    2 SIALSKKDKVYKDAMETASQSGDRELAEELLVFFIEQGKKECFASCLFVCYDLIRPDVALELSWMNNMIDFAFPYLLQFIREYTGKVDELVKDKIE 289
            SI L KKDK+YKDAME A++S + ELAEELL FF+++   +CFA+ L+ CYDL+ PDV +EL+W + ++D+A PY++Q +R+Y  ++++L + + E
Sbjct: 1526 SIELCKKDKLYKDAMEYAAESRNGELAEELLSFFLDEKLYDCFAASLYHCYDLLHPDVIMELAWKHKIMDYAMPYMIQVMRDYQTRLEKLERSEHE 1621          
BLAST of FC873486 vs. ExPASy Swiss-Prot
Match: CLH_SCHPO (Probable clathrin heavy chain OS=Schizosaccharomyces pombe GN=chc1 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.165e-18
Identity = 44/98 (44.90%), Postives = 63/98 (64.29%), Query Frame = 2
Query:    2 SIALSKKDKVYKDAMETASQSGDRELAEELLVFFIEQGKKECFASCLFVCYDLIRPDVALELSWMNNMIDFAFPYLLQFIREYTGKVDELVKDKIEAQ 295
            SI LSK+D+ YKDA+ TA  S    +AE+L+ +F+E G  ECFA+ L+ CY L+R D+ +E+SW   + D+A+PY + F  E   KV  L KD  + Q
Sbjct: 1519 SIELSKQDRFYKDAIITARDSDQTTIAEDLMKYFVEIGNYECFAAILYTCYHLLRNDLVMEISWRKGLQDYAYPYFINFQCEMFSKVLNLEKDLKDRQ 1616          
BLAST of FC873486 vs. ExPASy Swiss-Prot
Match: CLH_YEAST (Clathrin heavy chain OS=Saccharomyces cerevisiae GN=CHC1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.415e-14
Identity = 32/93 (34.41%), Postives = 63/93 (67.74%), Query Frame = 2
Query:    2 SIALSKKDKVYKDAMETASQSGDRELAEELLVFFIEQGKKECFASCLFVCYDLIRPDVALELSWMNNMIDFAFPYLLQFIREYTGKVDELVKD 280
            S+++ K++K++KDA+ETA+ S D ++ E LL +F+E G +E F + L+  Y+L+R +  LE+SWMN++ D+  P+ +   +E    + ++ ++
Sbjct: 1530 SLSILKEEKLWKDAIETAAISQDPKVVEALLTYFVETGNREGFVALLYAAYNLVRIEFVLEISWMNSLEDYIKPFEISIKKEQNDSIKKITEE 1622          
The following BLAST results are available for this feature:
BLAST of FC873486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
CLH2_HUMAN6.716e-2858.89Clathrin heavy chain 2 OS=Homo sapiens GN=CLTCL1 P... [more]
CLH_RAT5.685e-2758.89Clathrin heavy chain 1 OS=Rattus norvegicus GN=Clt... [more]
CLH_MOUSE5.685e-2758.89Clathrin heavy chain 1 OS=Mus musculus GN=Cltc PE=... [more]
CLH1_HUMAN5.685e-2758.89Clathrin heavy chain 1 OS=Homo sapiens GN=CLTC PE=... [more]
CLH1_BOVIN5.685e-2758.89Clathrin heavy chain 1 OS=Bos taurus GN=CLTC PE=1 ... [more]
CLH_DROME1.654e-2658.89Clathrin heavy chain OS=Drosophila melanogaster GN... [more]
CLH_DICDI2.822e-2651.61Clathrin heavy chain OS=Dictyostelium discoideum G... [more]
CLH_CAEEL1.449e-2248.96Probable clathrin heavy chain 1 OS=Caenorhabditis ... [more]
CLH_SCHPO2.165e-1844.90Probable clathrin heavy chain OS=Schizosaccharomyc... [more]
CLH_YEAST9.415e-1434.41Clathrin heavy chain OS=Saccharomyces cerevisiae G... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI3BB05FM1 AbsDev Citrus clementina cDNA clone KN0AAI3BB05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873486 ID=FC873486; Name=FC873486; organism=Citrus clementina; type=EST; length=762bp
ATCTATTGCACTGTCAAAGAAAGACAAGGTTTACAAAGATGCAATGGAGA
CTGCCTCACAATCGGGTGATCGTGAACTTGCAGAGGAGTTGCTGGTTTTT
TTCATAGAACAGGGGAAGAAGGAATGCTTTGCGTCATGCCTGTTCGTTTG
TTATGATTTGATCAGACCTGATGTTGCTCTTGAACTTTCTTGGATGAACA
ACATGATCGACTTTGCCTTCCCATATCTCTTGCAGTTTATCCGTGAATAC
ACAGGCAAAGTTGATGAACTTGTGAAGGACAAAATTGAGGCTCAAATTGA
AGTCAAGTCTAAAGAGAAAGAAGAAAAGGATGTAATTGCACAACAGAATA
TGTATGCTCAATTGCTGCCTCTTGCTTTGCCTGCGCCACCTATGCCTGGT
ATGGGAGGACCGGGAATGGGAGGTGGTTTTGCTTCAACAGCACCACCTAT
GGGTGGAATGGGAATGCCTCCGATGCCTCCTTTCGGCATGCCTCCAATGG
GTAGCTACTGATTTTGTTGATCAGATCGGGAAATAGGTGTAGTTACTTGT
TGGTTGGAGCACAAGAACTTAGCAGTTGTTTCAGGCTTGCTTTTGCGTGG
TGTTCCTCAGGATTCGTCGCCTCCCATTGTTTTTTTGGTGTTCCTTTTGT
CTCATGGTGAAAGTCTAATCAGAAATAACATGGCATTTTTTTGTACTAGT
TGTGTGGATATGTGTTGTAGTATTTTTTTTTCCCGGGTAGCAGAAGCATT
TTTTGGCTGCTG
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