FC873500

Overview
NameFC873500
Unique NameFC873500
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15368 contig Ccv1_Contig15368:70..774. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873500 vs. ExPASy Swiss-Prot
Match: ZIP4_ARATH (Zinc transporter 4, chloroplastic OS=Arabidopsis thaliana GN=ZIP4 PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.299e-51
Identity = 102/151 (67.55%), Postives = 123/151 (81.46%), Query Frame = 2
Query:  251 CRDDAAAFNLKFVAIASILISGIVGVAIPLIGKHRRFLKTDGSLFVATKAFAAGVILATGFVHMLSGGSEALDNPCLPEFPWSKFPFPGFFAMVASLLTLLLDFVGTQYYERKQGLTRATEEQGRVRSVDEDSDSGIVPVLEIKDRNVKVF 703
            CRDD+AAF LKFVAIASIL++G  GVAIPLIG++RRFL+T+G+LFVA KAFAAGVILATGFVHML+GG+EAL NPCLP+FPWSKFPFPGFFAMVA+L TLL+DF+GTQYYERKQ   +A  E     +     +  +VPV+  +  + KVF
Sbjct:   18 CRDDSAAFLLKFVAIASILLAGAAGVAIPLIGRNRRFLQTEGNLFVAAKAFAAGVILATGFVHMLAGGTEALSNPCLPDFPWSKFPFPGFFAMVAALATLLVDFMGTQYYERKQERNQAATE-----AAAGSEEIAVVPVVGERVTDNKVF 163          
BLAST of FC873500 vs. ExPASy Swiss-Prot
Match: IRT3_ARATH (Fe(2+) transport protein 3, chloroplastic OS=Arabidopsis thaliana GN=IRT3 PE=2 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 1.875e-50
Identity = 101/153 (66.01%), Postives = 122/153 (79.74%), Query Frame = 2
Query:  251 CRDDAAAFNLKFVAIASILISGIVGVAIPLIGKHRRFLKTDGSLFVATKAFAAGVILATGFVHMLSGGSEALDNPCLPEFPWSKFPFPGFFAMVASLLTLLLDFVGTQYYERKQ--GLTRATEEQGRVRSVDEDSDSGIVPVLEIKDRNVKVF 703
            CRDD+AAF LKFVAIASIL++G  GV IPLIG++RRFL+TDG+LFV  KAFAAGVILATGFVHML+GG+EAL NPCLP+FPWSKFPFPGFFAM+A+L+TL +DF+GTQYYERKQ    + + E  GR     E S   +VP++     + KVF
Sbjct:   18 CRDDSAAFLLKFVAIASILLAGAAGVTIPLIGRNRRFLQTDGNLFVTAKAFAAGVILATGFVHMLAGGTEALKNPCLPDFPWSKFPFPGFFAMIAALITLFVDFMGTQYYERKQEREASESVEPFGR-----EQSPGIVVPMIGEGTNDGKVF 165          
BLAST of FC873500 vs. ExPASy Swiss-Prot
Match: ZIP9_ARATH (Zinc transporter 9 OS=Arabidopsis thaliana GN=ZIP9 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.350e-32
Identity = 76/120 (63.33%), Postives = 87/120 (72.50%), Query Frame = 2
Query:  293 IASILISGIVGVAIPLIGKHRRFLKTDGSLFVATKAFAAGVILATGFVHMLSGGSEALDNPCLPEFPWSKFPFPGFFAMVASLLTLLLDFVGTQYYERKQG--LTRATEEQGRVRSVDED 646
            +ASILISG  GV+IPL+G     L  +G L    KAFAAGVILATGFVHMLSGGS+AL +PCLPEFPW  FPFP FFAMVA+LLTLL DF+ T YYERKQ   + ++ E  G   SV  D
Sbjct:    1 MASILISGAAGVSIPLVGT---LLPLNGGLMRGAKAFAAGVILATGFVHMLSGGSKALSDPCLPEFPWKMFPFPEFFAMVAALLTLLADFMITGYYERKQEKMMNQSVESLGTQVSVMSD 117          
BLAST of FC873500 vs. ExPASy Swiss-Prot
Match: ZIP8_ARATH (Probable zinc transporter 8 OS=Arabidopsis thaliana GN=ZIP8 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.224e-25
Identity = 53/115 (46.09%), Postives = 75/115 (65.22%), Query Frame = 2
Query:  245 EDCRDDAAAFNLKFVAIASILISGIVGVAIPLIGKHRRFLKTDGSLFVATKAFAAGVILATGFVHMLSGGSEALDNPCLPEFPWSKFPFPGFFAMVASLLTLLLDFVGTQYYERK 589
            + C D   A  LK VAI +IL++ ++GVA PL  ++  FL  DG +F+  K FA+G+IL TGF+H+L    E L +PCL + PW KFPF GF AM++ L+TL +D + T  Y +K
Sbjct:   39 DSCIDKTKALPLKIVAIVAILVTSMIGVAAPLFSRYVTFLHPDGKIFMIIKCFASGIILGTGFMHVLPDSFEMLSSPCLEDNPWHKFPFTGFVAMLSGLVTLAIDSIATSLYTKK 153          
BLAST of FC873500 vs. ExPASy Swiss-Prot
Match: IRT1_ARATH (Fe(2+) transport protein 1 OS=Arabidopsis thaliana GN=IRT1 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.334e-23
Identity = 52/116 (44.83%), Postives = 73/116 (62.93%), Query Frame = 2
Query:  251 CRDDAAAFNLKFVAIASILISGIVGVAIPLIGKHRRFLKTDGSLFVATKAFAAGVILATGFVHMLSGGSEALDNPCLPEFPWSKFPFPGFFAMVASLLTLLLDFVGTQYYERKQGL 598
            C + A A  LK +AI  ILI+ ++GV  PL  ++  FL+ DG++F   K FA+G+IL TGF+H+L    E L + CL E PW KFPF GF AM++ L+TL +D + T  Y  K  +
Sbjct:   34 CVNKAKALPLKVIAIFVILIASMIGVGAPLFSRNVSFLQPDGNIFTIIKCFASGIILGTGFMHVLPDSFEMLSSICLEENPWHKFPFSGFLAMLSGLITLAIDSMATSLYTSKNAV 149          
BLAST of FC873500 vs. ExPASy Swiss-Prot
Match: IRT2_ARATH (Fe(2+) transport protein 2 OS=Arabidopsis thaliana GN=IRT2 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.427e-23
Identity = 51/123 (41.46%), Postives = 76/123 (61.79%), Query Frame = 2
Query:  251 CRDDAAAFNLKFVAIASILISGIVGVAIPLIGKHRRFLKTDGSLFVATKAFAAGVILATGFVHMLSGGSEALDNPCLPEFPWSKFPFPGFFAMVASLLTLLLDFVGTQYYERKQGLTRATEEQ 619
            C + A A  LK VAI +IL + ++GV  PL  ++  FL+ DG+ F+  K F++G+IL TGF+H+L    E L + CL + PW KFPF GF AM++ L+TL +D + T  Y  K  +    +E+
Sbjct:   37 CINKAKALPLKIVAIVAILTTSLIGVTSPLFSRYISFLRPDGNGFMIVKCFSSGIILGTGFMHVLPDSFEMLSSKCLSDNPWHKFPFAGFVAMMSGLVTLAIDSITTSLYTGKNSVGPVPDEE 159          
BLAST of FC873500 vs. ExPASy Swiss-Prot
Match: ZIP5_ARATH (Zinc transporter 5 OS=Arabidopsis thaliana GN=ZIP5 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.699e-23
Identity = 56/114 (49.12%), Postives = 74/114 (64.91%), Query Frame = 2
Query:  245 EDCRDDAAAFNLKFVAIASILISGIVGVAIPLIGKHRRFLKTDGSLFVATKAFAAGVILATGFVHMLSGGSEALDNPCLPEFPWSKFPFPGFFAMVASLLTLLLDFVGTQYYER 586
            +D  + A A   K  AI S+L +G++GV  PL+GK    LK + + F  TKAFAAGVILATGF+H+L  G E L +PCL    W +FPF GF AMVA++LTL +D   T Y+ +
Sbjct:   37 DDEANKAGAKKYKIAAIPSVLAAGVIGVMFPLLGKFFPSLKPETTFFFVTKAFAAGVILATGFMHVLPEGYEKLTSPCLKGEAW-EFPFTGFIAMVAAILTLSVDSFATSYFHK 149          
BLAST of FC873500 vs. ExPASy Swiss-Prot
Match: ZIP1_ARATH (Zinc transporter 1 OS=Arabidopsis thaliana GN=ZIP1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.161e-22
Identity = 59/134 (44.03%), Postives = 83/134 (61.94%), Query Frame = 2
Query:  269 AFNLKFVAIASILISGIVGVAIPLIGKHRRFLKTDGSLFVATKAFAAGVILATGFVHMLSGGSEALDNPCLPEFPWSKFPFPGFFAMVASLLTLLLDFVGTQYYERKQGLTRATEEQGRVRSVDEDSDSGIVPV 670
            A  LK  +IA +L++G VGV++PLIGK    L+ +  +F   KAFAAGVIL TGFVH+L    E L +PCL +    KFPF GF AM++++ TL++D   T YY+R+        +Q  V  VDE+  +G V +
Sbjct:   47 ATKLKLGSIALLLVAGGVGVSLPLIGKRIPALQPENDIFFMVKAFAAGVILCTGFVHILPDAFERLSSPCLEDTTAGKFPFAGFVAMLSAMGTLMIDTFATGYYKRQHFSNNHGSKQVNV-VVDEEEHAGHVHI 179          
BLAST of FC873500 vs. ExPASy Swiss-Prot
Match: ZIP3_ARATH (Zinc transporter 3 OS=Arabidopsis thaliana GN=ZIP3 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.120e-21
Identity = 58/136 (42.65%), Postives = 81/136 (59.56%), Query Frame = 2
Query:  245 EDCRDDAAAFNLKFVAIASILISGIVGVAIPLIGKHRRFLKTDGSLFVATKAFAAGVILATGFVHMLSGGSEALDNPCLPEFPWSKFPFPGFFAMVASLLTLLLDFVGTQ--YYERKQGLTRATEEQGRVRSVDED 646
            +D  + A A   K  AI ++LI+GI+GV  PL+GK    L+ +   F  TKAFAAGVILATGF+H+L    E L++PCL    W +FPF GF AM+A++LTL +D   T   Y    +   R ++ +    SVD +
Sbjct:   42 DDHENKAGARKYKIAAIPTVLIAGIIGVLFPLLGKVFPSLRPETCFFFVTKAFAAGVILATGFMHVLPEAYEMLNSPCLTSEAW-EFPFTGFIAMIAAILTLSVDTFATSSFYKSHCKASKRVSDGETGESSVDSE 176          
BLAST of FC873500 vs. ExPASy Swiss-Prot
Match: ZIP10_ARATH (Probable zinc transporter 10 OS=Arabidopsis thaliana GN=ZIP10 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.022e-20
Identity = 49/132 (37.12%), Postives = 80/132 (60.61%), Query Frame = 2
Query:  251 CRDDAAAFNLKFVAIASILISGIVGVAIPLIGKHRRFLKTDGSLFVATKAFAAGVILATGFVHMLSGGSEALDNPCLPEFPWSKFPFPGFFAMVASLLTLLLDFVGTQYYERKQGLTRATEEQGRVRSVDED 646
            C D   A +LK ++I SILI+ ++GV +P   +     + + S F+  K+FA+G+IL+TGF+H+L    E L +PCL + PW KFPF GF AM++++ TL++D + T  +  K G      +   V + D++
Sbjct:   42 CIDKNKALDLKLLSIFSILITSLIGVCLPFFARSIPAFQPEKSHFLIVKSFASGIILSTGFMHVLPDSFEMLSSPCLNDNPWHKFPFAGFVAMMSAVFTLMVDSITTSVF-TKSGRKDLRADVASVETPDQE 172          
The following BLAST results are available for this feature:
BLAST of FC873500 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
ZIP4_ARATH1.299e-5167.55Zinc transporter 4, chloroplastic OS=Arabidopsis t... [more]
IRT3_ARATH1.875e-5066.01Fe(2+) transport protein 3, chloroplastic OS=Arabi... [more]
ZIP9_ARATH1.350e-3263.33Zinc transporter 9 OS=Arabidopsis thaliana GN=ZIP9... [more]
ZIP8_ARATH1.224e-2546.09Probable zinc transporter 8 OS=Arabidopsis thalian... [more]
IRT1_ARATH3.334e-2344.83Fe(2+) transport protein 1 OS=Arabidopsis thaliana... [more]
IRT2_ARATH7.427e-2341.46Fe(2+) transport protein 2 OS=Arabidopsis thaliana... [more]
ZIP5_ARATH9.699e-2349.12Zinc transporter 5 OS=Arabidopsis thaliana GN=ZIP5... [more]
ZIP1_ARATH2.161e-2244.03Zinc transporter 1 OS=Arabidopsis thaliana GN=ZIP1... [more]
ZIP3_ARATH3.120e-2142.65Zinc transporter 3 OS=Arabidopsis thaliana GN=ZIP3... [more]
ZIP10_ARATH2.022e-2037.12Probable zinc transporter 10 OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CF12FM2 AbsDev Citrus clementina cDNA clone KN0AAI1CF12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873500 ID=FC873500; Name=FC873500; organism=Citrus clementina; type=EST; length=704bp
CGACGGGGCCCGATTCCTTCTCGTGCTTGCTGATTAAACCCCATCACCAT
CTTCCATACTAATTATTAAAAAAAAAAAAAAAGCTTTTCAGAATCTCGTT
TCTCTTGCCATGTCATTCATCGAGGATCTCTGGGGATTGCGTTTTTTCGA
TCATTTTAGATCAAAGACGAAAGCTTTTTCCGGTTCCTTTTTGCATGCGG
TTTCTGATTCGATGATGAAGTCGAGCTGCGAGTCCTCGGACCGCGAAGAC
TGCCGTGACGACGCGGCGGCCTTTAATCTCAAATTCGTCGCCATAGCCTC
CATCCTCATTTCCGGAATCGTCGGCGTCGCCATTCCGTTAATTGGGAAGC
ACCGCCGGTTCTTAAAAACCGACGGCAGTCTGTTCGTCGCTACTAAAGCG
TTTGCGGCCGGTGTCATTTTGGCTACGGGTTTTGTTCACATGTTATCTGG
AGGATCCGAGGCGTTGGATAACCCGTGTTTGCCCGAATTCCCGTGGTCCA
AGTTCCCGTTCCCTGGGTTTTTCGCCATGGTGGCTTCGCTTCTGACGCTG
CTTCTGGACTTCGTGGGGACACAATATTACGAGAGGAAACAGGGCCTGAC
CCGGGCTACCGAGGAGCAGGGTCGGGTCCGGTCAGTGGATGAGGACTCGG
ATTCGGGTATTGTCCCGGTTCTGGAAATTAAGGACCGGAACGTGAAGGTC
TTCG
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