FC873502

Overview
NameFC873502
Unique NameFC873502
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length454
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873502 vs. ExPASy Swiss-Prot
Match: PUB3_ARATH (U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 1.209e-18
Identity = 46/81 (56.79%), Postives = 61/81 (75.31%), Query Frame = 3
Query:    3 KTSFVEEGGIPVLVEIIEVGTQRQKEIAVAILLQVCEESVVYRTLVAREGAIPPLVALSQSGTNRAKQKAEALIELLRQPR 245
            + + V EGGIP+LVE +++G+QR KE A ++LLQ+C  S  + TLV +EGAIPPLVALSQSGT RAK+KA+ L+   R  R
Sbjct:  671 RQAIVREGGIPLLVETVDLGSQRGKENAASVLLQLCLNSPKFCTLVLQEGAIPPLVALSQSGTQRAKEKAQQLLSHFRNQR 751          
BLAST of FC873502 vs. ExPASy Swiss-Prot
Match: PUB2_ARATH (U-box domain-containing protein 2 OS=Arabidopsis thaliana GN=PUB2 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 8.661e-17
Identity = 44/84 (52.38%), Postives = 58/84 (69.05%), Query Frame = 3
Query:    3 KTSFVEEGGIPVLVEIIEVGTQRQKEIAVAILLQVCEESVVYRTLVAREGAIPPLVALSQSGTNRAKQKAEALIELLRQPRSGN 254
            K +  EEGGIPVLVE++E+G+ R KE A A LLQ+C  S  +   V REG IPPLVAL++SGT R K+KA+ L++  +  R  N
Sbjct:  620 KIAIGEEGGIPVLVEVVELGSARGKENATAALLQLCTHSPKFCNNVIREGVIPPLVALTKSGTARGKEKAQNLLKYFKAHRQSN 703          
BLAST of FC873502 vs. ExPASy Swiss-Prot
Match: PUB4_ARATH (U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 3.080e-14
Identity = 38/68 (55.88%), Postives = 52/68 (76.47%), Query Frame = 3
Query:   18 EEGGIPVLVEIIEVGTQRQKEIAVAILLQVCEESVVYRTLVAREGAIPPLVALSQSGTNRAKQKAEAL 221
            +EGGIP+LVE++E+G+ R KE A A LLQ+   S  +  +V +EGA+PPLVALSQSGT RA++K + L
Sbjct:  744 QEGGIPLLVEVVELGSARGKENAAAALLQLSTNSGRFCNMVLQEGAVPPLVALSQSGTPRAREKVQTL 811          
The following BLAST results are available for this feature:
BLAST of FC873502 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PUB3_ARATH1.209e-1856.79U-box domain-containing protein 3 OS=Arabidopsis t... [more]
PUB2_ARATH8.661e-1752.38U-box domain-containing protein 2 OS=Arabidopsis t... [more]
PUB4_ARATH3.080e-1455.88U-box domain-containing protein 4 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI3BC02FM1 AbsDev Citrus clementina cDNA clone KN0AAI3BC02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873502 ID=FC873502; Name=FC873502; organism=Citrus clementina; type=EST; length=454bp
CGAAAACGTCGTTTGTTGAGGAAGGTGGGATACCTGTGTTAGTGGAGATT
ATAGAAGTGGGGACACAGAGGCAGAAGGAAATCGCGGTGGCTATATTGTT
GCAGGTTTGCGAGGAAAGTGTGGTGTACCGTACTCTGGTGGCCCGCGAAG
GAGCGATCCCTCCCTTGGTCGCTTTGTCACAGTCCGGCACTAATCGCGCC
AAGCAAAAGGCGGAGGCACTGATAGAGCTTCTGCGGCAACCAAGGTCTGG
CAACGCCGCTGCAAGAGCGTCAGATGTGTCAGTATGAAGAGTACCCCACC
CACGACATGCCTCATAATGTAATCAAAACATTCTGACAGTGAGATAGAAA
AAGAAAAATGTAAATATCTTATGTTACGAAAGCTTGTAAAATTTGTGATA
AGTGGTCCGAGTTTGGTTTGCTTTTTGAACTTTTAAAAAAAAAAAAAAAA
AAAA
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