FC873504

Overview
NameFC873504
Unique NameFC873504
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length819
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig305 contig Ccv1_Contig305:1105..1922. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873504 vs. ExPASy Swiss-Prot
Match: UPL3_ARATH (E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana GN=UPL3 PE=1 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 1.149e-76
Identity = 141/163 (86.50%), Postives = 150/163 (92.02%), Query Frame = 3
Query:    3 SFIFGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 491
            +F  GFNQVFDITSLQIFTP ELD+LLCGRRELWE   LAEHIKFDHGY AKSPAI+NLLEIMGE T DQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSST+ + A+NG G SE+ADDDLPSVMTCANYLKLPPYSTKEIMYKKL+YAI+EGQGSFDLS
Sbjct: 1727 AFRSGFNQVFDITSLQIFTPSELDYLLCGRRELWEVETLAEHIKFDHGYNAKSPAIINLLEIMGELTADQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTS-SAAANGAGASETADDDLPSVMTCANYLKLPPYSTKEIMYKKLLYAINEGQGSFDLS 1888          
BLAST of FC873504 vs. ExPASy Swiss-Prot
Match: UPL4_ARATH (E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana GN=UPL4 PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 8.583e-48
Identity = 98/163 (60.12%), Postives = 119/163 (73.01%), Query Frame = 3
Query:    3 SFIFGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 491
            +F  GFNQVF I  L+IF   EL+ +LCG  +L+    + +HIKFDHGYT+ SP +  LL+I+ EF  +QQRAF QFVTG+PRLP GGLA L+PKLTIVRKH              S+S+D DLPSVMTCANYLKLPPYS+KE M +KL+YAI+EGQGSF LS
Sbjct: 1353 AFRSGFNQVFSIEHLRIFNEEELETMLCGECDLFSMNEVLDHIKFDHGYTSSSPPVEYLLQILHEFDREQQRAFLQFVTGSPRLPHGGLASLSPKLTIVRKHG-------------SDSSDTDLPSVMTCANYLKLPPYSSKEKMKEKLIYAITEGQGSFHLS 1502          
BLAST of FC873504 vs. ExPASy Swiss-Prot
Match: TRIPC_HUMAN (Probable E3 ubiquitin-protein ligase TRIP12 OS=Homo sapiens GN=TRIP12 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.383e-36
Identity = 86/164 (52.44%), Postives = 102/164 (62.20%), Query Frame = 3
Query:    3 SFIFGFNQVFDITSLQIFTPHELDHLLCGRR-ELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 491
            SF  GF  VF ++ LQ F P ELD LLCG + + W+   L E  + DHGYT  S A+  L EI+  F  +QQR F QFVTG+PRLP GG   LNP LTIVRK   +           +E+ DD LPSVMTC NYLKLP YS+ EIM +KL+ A  EGQ SF LS
Sbjct: 1840 SFRDGFESVFPLSHLQYFYPEELDQLLCGSKADTWDAKTLMECCRPDHGYTHDSRAVKFLFEILSSFDNEQQRLFLQFVTGSPRLPVGGFRSLNPPLTIVRKTFES-----------TENPDDFLPSVMTCVNYLKLPDYSSIEIMREKLLIAAREGQQSFHLS 1992          
BLAST of FC873504 vs. ExPASy Swiss-Prot
Match: YDE1_SCHPO (Probable ubiquitin fusion degradation protein C12B10.01c OS=Schizosaccharomyces pombe GN=SPAC12B10.01c PE=2 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 2.964e-32
Identity = 79/163 (48.47%), Postives = 97/163 (59.51%), Query Frame = 3
Query:    3 SFIFGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 491
            +F  GF+ VF  TSLQ+ T HEL  L     E W  A L + I  DHGYT +SP I  LL +M +    +QR F QF+TG+ +LP GG A LNP LT+VR+ +            P    DD LPSVMTC NYLKLP YS+ E++  +L  AI EGQGSF LS
Sbjct: 1496 AFQNGFSSVFPYTSLQVLTEHELVTLFGTVDEDWSYATLMKSIVADHGYTMESPTIQRLLTLMSQMNFQEQRDFLQFITGSRKLPIGGFAGLNPPLTVVRRLNE-----------PPYVPDDYLPSVMTCVNYLKLPEYSSSEVLGSRLSKAILEGQGSFHLS 1647          
BLAST of FC873504 vs. ExPASy Swiss-Prot
Match: UFD4_YEAST (Ubiquitin fusion degradation protein 4 OS=Saccharomyces cerevisiae GN=UFD4 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.832e-29
Identity = 72/163 (44.17%), Postives = 97/163 (59.51%), Query Frame = 3
Query:    3 SFIFGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 491
            +FI GF++VF    + I  P EL  +     E W  A L  ++  +HGYT  S  I + + I+  F   ++R F QF+TG+P+LP GG   LNPK T+V KH       A +G     +AD+ LPSVMTCANYLKLP Y++K+IM  +L  AI EG G+F LS
Sbjct: 1332 AFIEGFSKVFSYERMLILFPDELVDIFGRVEEDWSMATLYTNLNAEHGYTMDSSIIHDFISIISAFGKHERRLFLQFLTGSPKLPIGGFKSLNPKFTVVLKH-------AEDGL----TADEYLPSVMTCANYLKLPKYTSKDIMRSRLCQAIEEGAGAFLLS 1483          
BLAST of FC873504 vs. ExPASy Swiss-Prot
Match: HECD1_HUMAN (E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens GN=HECTD1 PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.630e-22
Identity = 59/156 (37.82%), Postives = 87/156 (55.77%), Query Frame = 3
Query:    3 SFIFGFNQVFDITSLQIFTPHELDHLLCGRRE-LWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISE 467
            +F  GFN+VF +  L  F+  E+  +LCG +   W    +  + +   GYT  SP  +  + ++   + D+++AF QF TG   LPPGGLA L+P+LT+VRK  +T               D   PSV TC +YLKLP YS++EIM ++L+ A  E
Sbjct: 2466 AFRDGFNKVFPMEKLSSFSHEEVQMILCGNQSPSWAAEDIINYTEPKLGYTRDSPGFLRFVRVLCGMSSDERKAFLQFTTGCSTLPPGGLANLHPRLTVVRKVDAT---------------DASYPSVNTCVHYLKLPEYSSEEIMRERLLAATME 2606          
BLAST of FC873504 vs. ExPASy Swiss-Prot
Match: UPL6_ARATH (E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana GN=UPL6 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.835e-17
Identity = 59/162 (36.42%), Postives = 81/162 (50.00%), Query Frame = 3
Query:    6 FIFGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 491
            F+ GF Q+     + +F  HEL  L+ G  +  +   L  +  +  GY A    I    E+M  F+ + Q+ F +FVTG  R P  G   L P   I R     A  +ASN       + D LP+  TC N LKLPPY +KE++  KL+YAIS  +  FDLS
Sbjct:  880 FLRGFQQLIPKEWIDMFNEHELQVLISGSVDSLDIDDLRNNTNYAGGYHAGHYVIDMFWEVMKSFSTENQKKFLKFVTGCSRGPLLGFKYLEPAFCIQR-----AAGSASN------ESVDRLPTSATCMNLLKLPPYQSKELLETKLMYAIS-AEAGFDLS 1029          
BLAST of FC873504 vs. ExPASy Swiss-Prot
Match: UBE3A_HUMAN (Ubiquitin-protein ligase E3A OS=Homo sapiens GN=UBE3A PE=1 SV=4)

HSP 1 Score: 84.3445 bits (207), Expect = 8.663e-16
Identity = 58/159 (36.48%), Postives = 84/159 (52.83%), Query Frame = 3
Query:    3 SFIFGFNQVFDITSLQ-IFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 476
            +F  GF+ V + + L+ +F P E++ L+CG R L +  AL E  ++D GYT  S  I    EI+  FT +Q+R F QF TG  R P GGL  L  K+ I +    T                + LP+  TC N L LP YS+KE + ++L+ AI+  +G
Sbjct:  732 AFRRGFHMVTNESPLKYLFRPEEIELLICGSRNL-DFQALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKL--KMIIAKNGPDT----------------ERLPTSHTCFNVLLLPEYSSKEKLKERLLKAITYAKG 871          
BLAST of FC873504 vs. ExPASy Swiss-Prot
Match: UBE3A_MOUSE (Ubiquitin-protein ligase E3A OS=Mus musculus GN=Ube3a PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.615e-15
Identity = 57/159 (35.85%), Postives = 83/159 (52.20%), Query Frame = 3
Query:    3 SFIFGFNQVFDITSLQ-IFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 476
            +F  GF+ V + + L+ +F P E++ L+CG R L +  AL E  ++D GYT +S  I    EI+  FT +Q+R F  F TG  R P GGL  L  K+ I +    T                + LP+  TC N L LP YS+KE +  +L+ AI+  +G
Sbjct:  742 AFRRGFHMVTNESPLKYLFRPEEIELLICGSRNL-DFQALEETTEYDGGYTRESVVIREFWEIVHSFTDEQKRLFLLFTTGTDRAPVGGLGKL--KMIIAKNGPDT----------------ERLPTSHTCFNVLLLPEYSSKEKLNVRLLKAITYAKG 881          
BLAST of FC873504 vs. ExPASy Swiss-Prot
Match: YFK7_SCHPO (Probable E3 ubiquitin protein ligase C167.07c OS=Schizosaccharomyces pombe GN=SPAC167.07c PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.964e-13
Identity = 52/158 (32.91%), Postives = 71/158 (44.94%), Query Frame = 3
Query:    3 SFIFGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 476
            +F  GF Q+ D   L +F   E+  L+ G     +   L  H  +  GY   SP IV   E++ EF  + +R+F +FVT   R P  G   L P   I             NG   +      LP+  TC N LKLP YSTK+ +  KL+ A+  G G
Sbjct:  884 AFTNGFTQIIDPHWLAMFHESEIQILVGGDPVPIDIDDLRRHTVYAGGYEPNSPTIVLFWEVLREFEEEDKRSFVKFVTSVARPPILGFKALMPSFCI-----------RVNGEDETR-----LPTASTCVNLLKLPMYSTKQTLRDKLLTAVRSGVG 1025          
The following BLAST results are available for this feature:
BLAST of FC873504 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
UPL3_ARATH1.149e-7686.50E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis th... [more]
UPL4_ARATH8.583e-4860.12E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis th... [more]
TRIPC_HUMAN3.383e-3652.44Probable E3 ubiquitin-protein ligase TRIP12 OS=Hom... [more]
YDE1_SCHPO2.964e-3248.47Probable ubiquitin fusion degradation protein C12B... [more]
UFD4_YEAST6.832e-2944.17Ubiquitin fusion degradation protein 4 OS=Saccharo... [more]
HECD1_HUMAN1.630e-2237.82E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens... [more]
UPL6_ARATH7.835e-1736.42E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis th... [more]
UBE3A_HUMAN8.663e-1636.48Ubiquitin-protein ligase E3A OS=Homo sapiens GN=UB... [more]
UBE3A_MOUSE5.615e-1535.85Ubiquitin-protein ligase E3A OS=Mus musculus GN=Ub... [more]
YFK7_SCHPO8.964e-1332.91Probable E3 ubiquitin protein ligase C167.07c OS=S... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3BC05FM1 AbsDev Citrus clementina cDNA clone KN0AAI3BC05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873504 ID=FC873504; Name=FC873504; organism=Citrus clementina; type=EST; length=819bp
AATCTTTTATATTTGGATTCAATCAGGTCTTTGACATCACATCATTACAA
ATATTTACTCCTCATGAATTGGACCATCTGCTTTGTGGCCGTAGAGAGTT
GTGGGAGCCTGCGGCGCTTGCTGAGCATATAAAATTCGATCATGGATACA
CTGCCAAGAGTCCTGCAATTGTTAACTTACTAGAGATCATGGGAGAATTC
ACACCAGATCAGCAGCGTGCCTTCTGTCAGTTTGTTACTGGTGCACCTCG
TCTTCCACCGGGTGGGTTGGCGGTGCTGAATCCAAAGCTTACCATTGTCA
GAAAGCATTCTTCAACTGCACCTAATACAGCATCAAATGGAACCGGGCCT
TCGGAATCAGCGGATGATGACTTGCCAAGTGTCATGACTTGTGCCAATTA
CCTGAAGCTTCCTCCTTACTCTACCAAGGAAATTATGTACAAGAAACTGG
TTTATGCAATAAGCGAAGGGCAGGGATCTTTTGATCTGTCATGAGTTCTC
AAAACTAACCGATGGACCTTTGTATATTAATATATGTGTCATCAAGTCAA
TTCTCTTACCTGGGGATTATTCATCTTTGAAAGTAGCATCATATTTCAGT
CAAATAATGGCTGCTTTTCACTGCCCTTGTATCAATGTTCACATCATTGG
CAAGTTGATTTTTTTTGTTTCAGGTCAGACTTCAGGCTGCCCCAGTGCCA
CACTCTCTCAACAGAGATTTGAAGAGGGAAATTGTGGAGCAGTTTTTTGG
CTGCTGCTAGGACTTTGTATATAAAATAGGAAACTTAAAATTTTTTGTCT
TTTTTCCCTCCATTGACAA
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