FC873507

Overview
NameFC873507
Unique NameFC873507
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC873507_ssr150 microsatellite FC873507_ssr150:150..169. BLAST: Citrus ESTs to Prunus persica proteins V1
FC873507_ssr175 microsatellite FC873507_ssr175:175..206. BLAST: Citrus ESTs to Prunus persica proteins V1
FC873507_ssr218 microsatellite FC873507_ssr218:218..229. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10162 contig Ccv1_Contig10162:1..617. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873507 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.367e-16
Identity = 38/58 (65.52%), Postives = 45/58 (77.59%), Query Frame = 1
Query:  223 VGAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 396
            +   ARTT DRQTACNCLK  AGSI  +NPNNA GLP  CGV++PYKIS ST+C+ V+
Sbjct:   58 INGLARTTADRQTACNCLKNLAGSISGVNPNNAAGLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of FC873507 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUAR (Non-specific lipid-transfer protein 1 OS=Prunus armeniaca PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.367e-16
Identity = 39/58 (67.24%), Postives = 46/58 (79.31%), Query Frame = 1
Query:  223 VGAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 396
            V   ARTTPDR+TACNCLKQ +GSI  +NPNNA  LP  CGV+IPYKIS ST+C+ V+
Sbjct:   34 VNNLARTTPDRRTACNCLKQLSGSISGVNPNNAAALPGKCGVNIPYKISASTNCATVK 91          
BLAST of FC873507 vs. ExPASy Swiss-Prot
Match: NLTP4_LENCU (Non-specific lipid-transfer protein 4 (Fragment) OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.786e-16
Identity = 40/56 (71.43%), Postives = 44/56 (78.57%), Query Frame = 1
Query:  229 AAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 396
            AAA TTPDRQ ACNCLK AAGSI  LN NNA  LP  CGV+IPYKIS ST+C+ V+
Sbjct:   54 AAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 109          
BLAST of FC873507 vs. ExPASy Swiss-Prot
Match: NLTP6_LENCU (Non-specific lipid-transfer protein 6 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.333e-16
Identity = 40/56 (71.43%), Postives = 43/56 (76.79%), Query Frame = 1
Query:  229 AAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 396
            AAA TTPDRQ ACNCLK AAGSI  LN NNA  LP  CGV IPYKIS ST+C+ V+
Sbjct:   62 AAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVDIPYKISTSTNCNTVK 117          
BLAST of FC873507 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUPE (Non-specific lipid-transfer protein 1 OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.333e-16
Identity = 38/58 (65.52%), Postives = 44/58 (75.86%), Query Frame = 1
Query:  223 VGAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 396
            V   ARTTPDRQ ACNCLKQ + S+P +NPNNA  LP  CGV IPYKIS ST+C+ V+
Sbjct:   34 VNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVHIPYKISASTNCATVK 91          
BLAST of FC873507 vs. ExPASy Swiss-Prot
Match: NLTP2_LENCU (Non-specific lipid-transfer protein 2 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.979e-16
Identity = 39/56 (69.64%), Postives = 44/56 (78.57%), Query Frame = 1
Query:  229 AAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 396
            AAA TTPDRQ ACNCLK AAGSI  LN NNA  LP  CGV+IPYKIS +T+C+ V+
Sbjct:   62 AAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTTTNCNTVK 117          
BLAST of FC873507 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.196e-16
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 1
Query:  223 VGAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 396
            V   ARTTPDRQ ACNCLKQ + S+P +NPNNA  LP  CGV+IPY+IS ST+C+ V+
Sbjct:   60 VNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVNIPYQISPSTNCANVK 117          
BLAST of FC873507 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDO (Non-specific lipid-transfer protein 1 OS=Prunus domestica PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.787e-16
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 1
Query:  223 VGAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 396
            V   ARTT DR+ ACNCLKQ +GSIP +NPNNA  LP  CGV++PYKIS ST+C+ V+
Sbjct:   34 VNNLARTTADRRAACNCLKQLSGSIPGVNPNNAAALPGKCGVNVPYKISASTNCATVK 91          
BLAST of FC873507 vs. ExPASy Swiss-Prot
Match: NLTP5_LENCU (Non-specific lipid-transfer protein 5 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.512e-15
Identity = 38/56 (67.86%), Postives = 43/56 (76.79%), Query Frame = 1
Query:  229 AAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 396
            AAA TTPDRQ ACNC+K AA SI  LN NNA  LP  CGV+IPYKIS ST+C+ V+
Sbjct:   61 AAANTTPDRQAACNCMKSAASSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 116          
BLAST of FC873507 vs. ExPASy Swiss-Prot
Match: NLTP_CICAR (Non-specific lipid-transfer protein OS=Cicer arietinum PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.399e-15
Identity = 38/58 (65.52%), Postives = 44/58 (75.86%), Query Frame = 1
Query:  223 VGAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYKISISTDCSKVR 396
            + +AA TTPDRQ ACNCLK AAGSI  LN NNA  LP  C V+IPYKIS ST+C+ +R
Sbjct:   58 LNSAAVTTPDRQAACNCLKSAAGSISRLNANNAAALPGKCVVNIPYKISTSTNCATIR 115          
The following BLAST results are available for this feature:
BLAST of FC873507 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
NLTP_MALDO1.367e-1665.52Non-specific lipid-transfer protein OS=Malus domes... [more]
NLTP1_PRUAR1.367e-1667.24Non-specific lipid-transfer protein 1 OS=Prunus ar... [more]
NLTP4_LENCU1.786e-1671.43Non-specific lipid-transfer protein 4 (Fragment) O... [more]
NLTP6_LENCU2.333e-1671.43Non-specific lipid-transfer protein 6 OS=Lens culi... [more]
NLTP1_PRUPE2.333e-1665.52Non-specific lipid-transfer protein 1 OS=Prunus pe... [more]
NLTP2_LENCU3.979e-1669.64Non-specific lipid-transfer protein 2 OS=Lens culi... [more]
NLTP1_PRUDU5.196e-1663.79Non-specific lipid-transfer protein 1 OS=Prunus du... [more]
NLTP1_PRUDO6.787e-1663.79Non-specific lipid-transfer protein 1 OS=Prunus do... [more]
NLTP5_LENCU1.512e-1567.86Non-specific lipid-transfer protein 5 OS=Lens culi... [more]
NLTP_CICAR4.399e-1565.52Non-specific lipid-transfer protein OS=Cicer ariet... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3BC08FM1 AbsDev Citrus clementina cDNA clone KN0AAI3BC08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873507 ID=FC873507; Name=FC873507; organism=Citrus clementina; type=EST; length=617bp
TTTTCTTTTATCATAGTAGTGCTGTTGAGTTTTAAATTCACTCTGTATCT
TTGTCCTATGGAGACCGCTATGTATTAGTATTATATAGTGCTTAACCTTC
CGTAATGGTAGAAGTGACTTATACATCATTTGCAATTGGAAATATTTTCA
TATATATATATATATATATGTATGTGTATGTATGTATGTATGTATGTATG
TATGTATATTTGTGTGTGGTGGGTGGGTGCGGCCGCCAGAACCACACCTG
ACCGCCAAACTGCATGCAACTGCTTGAAGCAAGCCGCCGGATCAATCCCT
AACCTCAACCCTAATAATGCTGTTGGTCTTCCACGAGCTTGTGGAGTCAG
CATTCCTTACAAGATCAGCATCTCTACTGACTGCTCTAAGGTCCGGTGAA
CAGGAATCTGGGCTGTTGATTTTCATATTTAAGTTGACGGAGTAGAATAA
ATGTATAATAATAAGGACATTTTTGTGTCCGAATTATGAGTCTCTCTCTA
CACTTTGTACTGCGAGTCTCGTTCCCGCCCTCGTTTCATGTTGTGTCTTA
TTGTCTTTGCTTTTCATGTCATCGTCAGTTTGTGTCTATTCTGTTTATTA
AATGAAATCTTGCCTTG
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