FC873514

Overview
NameFC873514
Unique NameFC873514
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length852
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC873514_ssr20 microsatellite FC873514_ssr20:20..37. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10163 contig Ccv1_Contig10163:1..852. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC873514 vs. ExPASy Swiss-Prot
Match: Y3721_ARATH (Uncharacterized protein At3g27210 OS=Arabidopsis thaliana GN=Y-2 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.196e-23
Identity = 82/231 (35.50%), Postives = 115/231 (49.78%), Query Frame = 2 
Query:  179 DSAAAMKMDLSSPFGSNSEKLAIPPS----PVKQAATVNAFR-GLGSKEETFFDSQPWLDSDCEDDFYSVNGDFTPSRGNTPVHHNFAGAPQVNSTSLPDKTPG-SISEPSPTGKKPKLAELFRQISKEGSEDQHVDEQNTQGSQNMANGKTEIRTTILDVLPSANGTPYVSGVNSVCSSERTPNGDSMMEDKPMRS---AQCCLPSFVSCRNS-TDRKKKMS---PAIAV 832
            D+ + +   +   F S  +  +IP +    PVK   + ++ +   GSK+ETFFDSQPWL SD +DDF+SVNGDFTPS GNTP        P+ ++    +K P    S P+P  ++ KL ELFR   +E        E+   GS                   SA  TPY+SG NS     R  N  ++ +++  +S      CLP F SC  S  +R+KKMS   P +AV
Sbjct:   34 DNVSILSPSVKKSFESPRKSTSIPANNNLTPVKSRWSFSSSKKSFGSKDETFFDSQPWLQSDSDDDFHSVNGDFTPSLGNTPKSSFSDRPPRFHNLIFHEKKPSRGSSSPAPLPRRKKLGELFRDSIRE--------EREESGSS------------------SAISTPYLSGANS-----REFNDTAIEKEEKKKSNWHHHRCLPGFSSCGGSFMERRKKMSSETPVVAV 233
The following BLAST results are available for this feature:
BLAST of FC873514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y3721_ARATH1.196e-2335.50Uncharacterized protein At3g27210 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI1CG03FM2 AbsDev Citrus clementina cDNA clone KN0AAI1CG03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873514 ID=FC873514; Name=FC873514; organism=Citrus clementina; type=EST; length=852bp
TTTGTATAATTCACTTTCGCTCTCTCTCTCTCTCTCTTCTGGTGTCTCTA
CAGAAGAAGATTTTCTGATGCTAAGAGCGTCGCTGGCTTCTTAGTTTTAT
TATACCTTTTGTCAATTTAAATAAAGAGAATTTAGAGACATGGGTTCGTG
CGTATCATCAGCACACAAGAGAACAGCAGACTCAGCCGCTGCCATGAAAA
TGGACTTATCATCACCATTTGGGTCCAATAGTGAGAAGCTTGCGATTCCA
CCTTCCCCCGTGAAACAAGCGGCGACAGTCAACGCGTTTAGAGGCCTTGG
TAGTAAAGAGGAAACCTTTTTCGATTCTCAACCATGGCTAGATTCTGACT
GCGAAGATGATTTTTACAGTGTCAATGGAGATTTTACCCCATCTCGTGGC
AATACTCCAGTCCATCACAACTTTGCAGGGGCTCCTCAAGTCAACAGCAC
TTCTCTTCCGGACAAAACTCCCGGTTCCATTTCTGAACCATCCCCAACAG
GAAAGAAACCGAAACTAGCTGAACTGTTCCGGCAAATTTCTAAAGAAGGT
TCAGAAGACCAACATGTTGATGAACAAAACACCCAAGGTAGCCAAAACAT
GGCCAATGGGAAGACAGAAATTAGGACAACTATACTTGATGTACTTCCAT
CAGCAAATGGTACCCCATATGTTTCTGGAGTTAACTCTGTGTGTAGTAGT
GAAAGGACTCCTAATGGAGATTCTATGATGGAGGACAAGCCAATGAGATC
GGCACAATGTTGCCTTCCAAGCTTTGTATCATGTCGTAATTCTACTGACA
GGAAGAAGAAGATGAGTCCTGCCATAGCTGTAAATGGTTAACCTTATATT
TT
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