FC873515

Overview
NameFC873515
Unique NameFC873515
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length828
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1121 contig Ccv1_Contig1121:2..829. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873515 vs. ExPASy Swiss-Prot
Match: AB19I_ARATH (ABC transporter I family member 19 OS=Arabidopsis thaliana GN=ABCI19 PE=2 SV=1)

HSP 1 Score: 434.106 bits (1115), Expect = 4.542e-121
Identity = 213/262 (81.30%), Postives = 242/262 (92.37%), Query Frame = 3
Query:   42 NSVKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELRNSTNLLSVVESCLRSETKL--EKKRPVDPPK 821
            ++++V GMQF+YE  D  P+F+DFNL +  GSRCLLVGANGSGKTTLLKILAGKHMVGG++VVQVL+RS+FHDTQLVCSGDLSYLGGSWSKTVGSAGE+PLQGDFSAEHMIFGVEG+DPVRRE+LI+LLDI+LQWRMHKVSDGQ+RRVQICMGLLHPFKVLLLDE+TVDLDVVARMDLL+FFK+EC+QRGATIVYATHIFDGLETWATHLAYIQDGEL R  K+ +++EL+ S NLLSVVES LRSE KL  +KK+PV P K
Sbjct:   12 DAIRVSGMQFAYEVED--PIFFDFNLDLPAGSRCLLVGANGSGKTTLLKILAGKHMVGGKNVVQVLSRSAFHDTQLVCSGDLSYLGGSWSKTVGSAGEVPLQGDFSAEHMIFGVEGTDPVRREKLIDLLDINLQWRMHKVSDGQKRRVQICMGLLHPFKVLLLDEVTVDLDVVARMDLLEFFKEECDQRGATIVYATHIFDGLETWATHLAYIQDGELNRLSKMTDIEELKTSPNLLSVVESWLRSEIKLVKKKKKPVAPWK 271          
BLAST of FC873515 vs. ExPASy Swiss-Prot
Match: AB21I_ARATH (ABC transporter I family member 21 OS=Arabidopsis thaliana GN=ABCI21 PE=2 SV=1)

HSP 1 Score: 420.624 bits (1080), Expect = 5.197e-117
Identity = 206/257 (80.16%), Postives = 233/257 (90.66%), Query Frame = 3
Query:   45 SVKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELRNSTNLLSVVESCLRSETKLEKKRPVDP 815
            +++V GMQFSY+  D  P+F+DFNL +  GSRCLLVGANGSGKTTLLKILAGKHMVGG++VVQVL+RS+FHDT+LVCSGDLSYLGGSWSKT GSAG+IPLQGDFSAEHMIFGVEG DP RRE+LI+LLDI+LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDE+TVDLDVVARMDLL+FFK+ECEQRGATIVYATHIFDGLETWA+HLAYI  GEL+ + KL E+ +L+ S NLLSVVE+ LRSETK+EKK    P
Sbjct:   12 AIRVSGMQFSYDVQD--PIFFDFNLDLPAGSRCLLVGANGSGKTTLLKILAGKHMVGGKNVVQVLDRSAFHDTELVCSGDLSYLGGSWSKTAGSAGDIPLQGDFSAEHMIFGVEGIDPFRREKLIDLLDINLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEVTVDLDVVARMDLLEFFKEECEQRGATIVYATHIFDGLETWASHLAYINGGELKLSAKLDEIKDLKTSPNLLSVVEAWLRSETKVEKKTKKKP 266          
BLAST of FC873515 vs. ExPASy Swiss-Prot
Match: AB20I_ARATH (ABC transporter I family member 20 OS=Arabidopsis thaliana GN=ABCI20 PE=2 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 9.259e-82
Identity = 157/272 (57.72%), Postives = 200/272 (73.53%), Query Frame = 3
Query:    9 MADGMNENEKLNSVKVCGMQFSYEGND------KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAG-EIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELRNSTNLLSVVESCLRSETKLEKKR 803
            MA    E ++ ++V++ G++F+Y G D        PL  DF++ ++   RCLLVG+NG+GKTT+LKIL GKHMV    +V+VL RS+FHDT L  SGDL YLGG W + V  AG E+P+Q D SAE MIFGV G DP RR+ LI++LDID+ WR+HKVSDGQRRRVQICMGLL PFKVLLLDEITVDLDV+AR DLL F + ECE+RGATI+YATHIFDGLE W TH+ Y+ +G+L+ A  + ++ E  +  +L+  VES LR E   E+KR
Sbjct:    1 MAVTEEEKKRNSTVEISGLRFTYPGIDGHPPPGSKPLIEDFSITLNSSDRCLLVGSNGAGKTTILKILGGKHMVEPH-MVRVLGRSAFHDTGLTSSGDLCYLGGEWRRDVAFAGFEVPIQMDISAEKMIFGVAGIDPQRRDELIKVLDIDISWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLKFLRKECEERGATIIYATHIFDGLEDWPTHIVYVANGKLQLALPMEKVKE-TSKKSLMRTVESWLRKERDEERKR 270          
BLAST of FC873515 vs. ExPASy Swiss-Prot
Match: YE31_SCHPO (Uncharacterized ABC transporter ATP-binding protein C20G4.01 OS=Schizosaccharomyces pombe GN=SPAC20G4.01 PE=4 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 3.926e-48
Identity = 116/256 (45.31%), Postives = 155/256 (60.55%), Query Frame = 3
Query:   48 VKVCGMQFSYEGNDKPPLFYDF-NLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSD-PVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDEL--RNSTNLLSVVESCLRSETKLEKKR 803
            ++V     SY  + K PL  D   L +  GSR LLVGANG+GK+TLLK+L+GK +     +  V  +  F ++    S    YLG  W           +  D S   +I  V G     RR+ LI +LDIDL+WRMH VSDG+RRRVQ+CMGLL PF+VLLLDE+TVDLDV+AR DLL+F ++E E R ATIVYATHIFDGL  W THL ++  G +     +++   L  R+ST   +++E+CL    + +K R
Sbjct:    1 MEVTVSNLSYTFSPKQPLSLDHVTLDLPKGSRTLLVGANGAGKSTLLKLLSGKSLAKAGHI-SVGGKDPFRES----SSAFVYLGTEW------VNNPVIHRDMSVARLIASVGGDKFAERRDFLISILDIDLRWRMHAVSDGERRRVQLCMGLLRPFEVLLLDEVTVDLDVLARADLLNFLQEETEVRNATIVYATHIFDGLAEWPTHLVHLSLGRIVDYGPISKFGALMTRSSTGNSALLETCLEWLKEDKKNR 245          
BLAST of FC873515 vs. ExPASy Swiss-Prot
Match: CAF16_YEAST (CCR4-associated factor 16 OS=Saccharomyces cerevisiae GN=CAF16 PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 6.713e-40
Identity = 95/231 (41.13%), Postives = 138/231 (59.74%), Query Frame = 3
Query:   45 SVKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM-------VGGRDVVQVLNRSSFHDTQLVCSGD----LSYLGGSW---SKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 695
            +++V  + + ++ +  P +  D NL I   +R L+VGANG+GK+TLLK+L+GKH+       V G D    L+ +   D + V         +YLG  W   S      G + L      +H           R ERL+ +LDID++WRMH++SDGQ+RRVQ+ MGLL P++VLLLDE+TVDLDV+AR  LL+F K E E R  ++VYATHIFDGL  W   + +++ G++
Sbjct:    6 AIEVRNLTYKFKESSDPSVV-DINLQIPWNTRSLVVGANGAGKSTLLKLLSGKHLCLDGKILVNGLDPFSPLSMNQVDDDESVEDSTNYQTTTYLGTEWCHMSIINRDIGVLELLKSIGFDHF--------RERGERLVRILDIDVRWRMHRLSDGQKRRVQLAMGLLKPWRVLLLDEVTVDLDVIARARLLEFLKWETETRRCSVVYATHIFDGLAKWPNQVYHMKSGKI 227          
BLAST of FC873515 vs. ExPASy Swiss-Prot
Match: CBIO2_ENTFA (Cobalt import ATP-binding protein cbiO 2 OS=Enterococcus faecalis GN=cbiO2 PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.140e-13
Identity = 62/235 (26.38%), Postives = 109/235 (46.38%), Query Frame = 3
Query:   63 MQFSYEGND--KPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKIL-------AGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIP--------LQGDFSAEHMIFGVEGSDPVR-RERLIELLDIDLQWRMH---KVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRA 704
            + F+Y+ N   +    +D NL I  GS   +VG  GSGK+TLL+ L        G+  +G R +    +  +    +               K VG   + P        ++ D +     FGV   +  +  +++++L+ +D ++  H   ++S GQ RRV I   L    +VL+LDE T  LD   R ++++ F    ++   TIV  TH+ D +  +A H+  ++ G++ RA
Sbjct:    8 VDFTYQPNTPFEQRALFDINLTIQDGSYTAIVGHTGSGKSTLLQHLNALVKPTKGQVTIGERVITPETDNKNLKPIR---------------KKVGIVFQFPEAQLFEETVERDIAFGPKNFGVSDEEAKKLAKKMLDLVGLDEKYLQHSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFSRLHKEHNMTIVLVTHLMDDVANYADHVIVLEKGQIVRA 227          
BLAST of FC873515 vs. ExPASy Swiss-Prot
Match: CBIO1_LACSS (Cobalt import ATP-binding protein cbiO 1 OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=cbiO1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.558e-12
Identity = 59/208 (28.37%), Postives = 95/208 (45.67%), Query Frame = 3
Query:  114 NLGISPGSRCLLVGANGSGKTTLLKIL-------AGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRER----LIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRA 704
            NL I  GS   L+G  GSGK+TLL+ L        G   +G R +    N  +    +         +G  +        E  +Q D +     FGV  ++ + R +    L+ L +  L+     +S GQ RRV I   L    +VL+LDE T  LD V R +++  F+    ++G TIV  TH  D +  +A H+  +++G + ++
Sbjct:   27 NLTIESGSYTALIGHTGSGKSTLLQHLNALLKPTEGVVQIGERQITPETNNKNLKVIR-------QKVGMVFQFPESQLFEATVQKDIAFGPQNFGVPEAEALERAKAMVELVGLPEAVLEQSPFDLSGGQMRRVAIAGVLAMQPEVLILDEPTAGLDPVGRREMMGLFEKLHREQGMTIVMVTHQMDDVANYADHVVVLENGGIAKS 227          
BLAST of FC873515 vs. ExPASy Swiss-Prot
Match: YADG_ECOLI (Uncharacterized ABC transporter ATP-binding protein yadG OS=Escherichia coli (strain K12) GN=yadG PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.472e-12
Identity = 64/236 (27.12%), Postives = 109/236 (46.19%), Query Frame = 3
Query:  114 NLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSA----GEIPLQGDFSAEHMI----------FGVEGSDP-VRRERLIELLDIDLQW-----RMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL-RRAEKLAELDELRNSTNLLSV 758
            +L +  G    L+G NG+GK+T + I++            ++N++S         G +S  G    K V +A    G +P + +F+    +          +GVE  +  +R E+ ++ LD+   W     R   +S G +RR+ I   L+H  K+L+LDE T  +D+  R  +  F KD    +G TI+  TH  +  E    ++  IQ GEL       A L +L++ T +L +
Sbjct:   25 DLQVEAGDFYALLGPNGAGKSTTIGIISS-----------LVNKTS---------GRVSVFGYDLEKDVVNAKRQLGLVPQEFNFNPFETVQQIVVNQAGYYGVERKEAYIRSEKYLKQLDL---WGKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLKD-LNDKGTTIILTTHYLEEAEMLCRNIGIIQHGELVENTSMKALLAKLKSETFILDL 236          
BLAST of FC873515 vs. ExPASy Swiss-Prot
Match: METN2_ACIAD (Methionine import ATP-binding protein metN 2 OS=Acinetobacter sp. (strain ADP1) GN=metN2 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.922e-12
Identity = 62/207 (29.95%), Postives = 101/207 (48.79%), Query Frame = 3
Query:  114 NLGISPGSRCLLVGANGSGKTTLLKILA-------GKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRE-RLIELLD-IDLQWRMH----KVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 695
            NL I  GS   ++G +G+GK+TL++++        G+ ++  +D    LN  S    +        +     +KTV +  E+PL+           + G   + RE RL+ELLD IDL  +      ++S GQ++RV I   L +  K+LL DE T  LD      +L   K   +++G TIV  TH  D +E+   H+A ++ G +
Sbjct:   25 NLDIPAGSIFGIIGYSGAGKSTLIRLINLLERPTHGQIIINQKDFT-ALNAQSLRQERANIGMIFQHFNLLQTKTVAANIEMPLK-----------LLGYSKIEREKRLMELLDFIDLTHKKDAFPDELSGGQKQRVGIARALANHPKILLCDEATSALDPQTTKSVLALLKKINKEQGITIVMVTHEMDVIESICDHVAVMESGHV 219          
BLAST of FC873515 vs. ExPASy Swiss-Prot
Match: NOSF_PSEST (Copper transport ATP-binding protein nosF OS=Pseudomonas stutzeri GN=nosF PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.723e-11
Identity = 64/230 (27.83%), Postives = 109/230 (47.39%), Query Frame = 3
Query:   39 LNSVKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGSDPVRRERLIELLDI--DLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAEL 722
            +N+V++ G+   Y       + +D NL +  G    L G NG+GKTT +K++ G  +      V+VL R+  +D Q+     L YL  + +     +G   L+           ++G+   + + L+E + +      R+   S G R+R+ +   LL   ++LLLDE TV LD +A  DL     D   QRG +I+  +H+  G+E      A +  G L+    L++L
Sbjct:    1 MNAVEIQGVSQRY---GSMTVLHDLNLNLGEGEVLGLFGHNGAGKTTSMKLILGL-LSPSEGQVKVLGRAP-NDPQV--RRQLGYLPENVTFYPQLSGRETLR-------HFARLKGAALTQVDELLEQVGLAHAADRRVKTYSKGMRQRLGLAQALLGEPRLLLLDEPTVGLDPIATQDLY-LLIDRLRQRGTSIILCSHVLPGVEAHINRAAILAKGCLQAVGSLSQL 215          
The following BLAST results are available for this feature:
BLAST of FC873515 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
AB19I_ARATH4.542e-12181.30ABC transporter I family member 19 OS=Arabidopsis ... [more]
AB21I_ARATH5.197e-11780.16ABC transporter I family member 21 OS=Arabidopsis ... [more]
AB20I_ARATH9.259e-8257.72ABC transporter I family member 20 OS=Arabidopsis ... [more]
YE31_SCHPO3.926e-4845.31Uncharacterized ABC transporter ATP-binding protei... [more]
CAF16_YEAST6.713e-4041.13CCR4-associated factor 16 OS=Saccharomyces cerevis... [more]
CBIO2_ENTFA3.140e-1326.38Cobalt import ATP-binding protein cbiO 2 OS=Entero... [more]
CBIO1_LACSS1.558e-1228.37Cobalt import ATP-binding protein cbiO 1 OS=Lactob... [more]
YADG_ECOLI3.472e-1227.12Uncharacterized ABC transporter ATP-binding protei... [more]
METN2_ACIAD5.922e-1229.95Methionine import ATP-binding protein metN 2 OS=Ac... [more]
NOSF_PSEST1.723e-1127.83Copper transport ATP-binding protein nosF OS=Pseud... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CG04FM2 AbsDev Citrus clementina cDNA clone KN0AAI1CG04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873515 ID=FC873515; Name=FC873515; organism=Citrus clementina; type=EST; length=828bp
GAAGGAAAATGGCGGACGGAATGAATGAGAATGAGAAATTGAACAGTGTC
AAAGTATGCGGCATGCAATTTTCTTACGAGGGGAACGATAAGCCTCCTCT
ATTCTACGATTTCAACCTCGGTATCTCGCCGGGATCTCGTTGCCTTCTCG
TTGGCGCCAATGGATCTGGAAAAACGACGCTGTTAAAGATTTTGGCGGGA
AAGCATATGGTGGGAGGAAGAGACGTCGTGCAAGTGCTGAACCGATCGTC
GTTTCATGACACTCAACTTGTTTGTAGTGGTGACCTATCTTATCTTGGAG
GATCTTGGAGTAAAACTGTTGGCTCTGCTGGGGAGATTCCACTCCAGGGA
GACTTCTCTGCTGAGCATATGATATTTGGAGTTGAAGGCTCTGATCCTGT
AAGAAGAGAGAGGTTGATTGAGCTACTTGATATTGACCTGCAGTGGCGAA
TGCATAAGGTATCTGATGGACAGCGGCGTCGAGTCCAAATCTGTATGGGT
CTTCTTCATCCTTTTAAGGTGCTTTTGCTGGATGAGATTACAGTGGATCT
AGACGTTGTTGCCAGGATGGATTTACTTGATTTTTTCAAGGATGAATGTG
AGCAGAGAGGAGCTACAATTGTATATGCAACCCATATTTTTGACGGATTG
GAAACATGGGCTACACATCTGGCATACATCCAAGATGGTGAGTTGAGGAG
GGCTGAGAAGTTAGCAGAACTTGATGAGTTGAGGAACTCTACTAACCTAC
TTTCTGTTGTTGAGTCCTGCCTCCGTTCTGAAACCAAGCTTGAGAAGAAA
AGGCCCGTCGATCCTCCTAAACAAGTGC
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