FC873519

Overview
NameFC873519
Unique NameFC873519
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length614
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6848 contig Ccv1_Contig6848:1189..1802. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MEP1_SOYBN (Metalloendoproteinase 1 OS=Glycine max PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 9.650e-31
Identity = 69/115 (60.00%), Postives = 77/115 (66.96%), Query Frame = 3
Query:    3 TADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPPNGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGSRKVELANDDIQGIQALYGNNP 347
            TA+I+I F + +HGD  PFDGP G L HAF+P +GR H D DE WV              DLESVAVHEIGHLLGLGHSS   AIMYPSI   +RKV LA DDI GI+ LYG NP
Sbjct:  191 TANIKILFASKNHGDPYPFDGPGGILGHAFAPTDGRCHFDADEYWVASGDVTKSPVTSAFDLESVAVHEIGHLLGLGHSSDLRAIMYPSIPPRTRKVNLAQDDIDGIRKLYGINP 305          
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP20_MOUSE (Matrix metalloproteinase-20 OS=Mus musculus GN=Mmp20 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.069e-21
Identity = 58/122 (47.54%), Postives = 67/122 (54.92%), Query Frame = 3
Query:    6 ADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYGNNPNFNG 359
            ADI I F TGDHGD  PFDGP GTLAHAF+P     G  H D  E W               +L +VA HE GH LGLGHS+   A+MYP+       +  L  DD++GIQALYG    F G
Sbjct:  164 ADIMISFETGDHGDSYPFDGPRGTLAHAFAPGEGLGGDTHFDNAEKWT--------MGTNGFNLFTVAAHEFGHALGLGHSTDPSALMYPTYKYQNPYRFHLPKDDVKGIQALYGPRKIFPG 277          
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP7_HUMAN (Matrilysin OS=Homo sapiens GN=MMP7 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.824e-21
Identity = 56/120 (46.67%), Postives = 68/120 (56.67%), Query Frame = 3
Query:    3 TADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGS-RKVELANDDIQGIQALYGNNPN 350
            TADI IGF  G HGD  PFDGP  TLAHAF+P     G  H D DE W               +    A HE+GH LG+GHSS  +A+MYP+  +G  +  +L+ DDI+GIQ LYG   N
Sbjct:  151 TADIMIGFARGAHGDSYPFDGPGNTLAHAFAPGTGLGGDAHFDEDERWT-------DGSSLGINFLYAATHELGHSLGMGHSSDPNAVMYPTYGNGDPQNFKLSQDDIKGIQKLYGKRSN 263          
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP1_HUMAN (Interstitial collagenase OS=Homo sapiens GN=MMP1 PE=1 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 2.382e-21
Identity = 58/118 (49.15%), Postives = 66/118 (55.93%), Query Frame = 3
Query:    6 ADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGSRKVELANDDIQGIQALYGNNPN 350
            ADI I F  GDH D  PFDGP G LAHAF P     G  H D DE W               +L  VA HE+GH LGL HS+   A+MYPS +  S  V+LA DDI GIQA+YG + N
Sbjct:  157 ADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWT--------NNFREYNLHRVAAHELGHSLGLSHSTDIGALMYPSYTF-SGDVQLAQDDIDGIQAIYGRSQN 265          
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: HE_PARLI (Hatching enzyme OS=Paracentrotus lividus PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.382e-21
Identity = 59/131 (45.04%), Postives = 70/131 (53.44%), Query Frame = 3
Query:    3 TADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPPNGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGSRKVELANDDIQGIQALYGNNPNFNGSSAPTDQQRDTS 395
            + DIRI F + DHGDG  FDG  G LAHAF P NG  H D  E W               +L  VA HE GH LGL HS+V  A+MYP          L NDDI GI++LYG+N   +GS   T  +R T+
Sbjct:  223 SVDIRIKFGSYDHGDGISFDGRGGVLAHAFLPRNGDAHFDDSETWTEGTRSGT-------NLFQVAAHEFGHSLGLYHSTVRSALMYPYYQGYVPNFRLDNDDIAGIRSLYGSN---SGSGTTTTTRRPTT 343          
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP20_PIG (Matrix metalloproteinase-20 OS=Sus scrofa GN=MMP20 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.064e-21
Identity = 57/122 (46.72%), Postives = 65/122 (53.28%), Query Frame = 3
Query:    6 ADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYGNNPNFNG 359
            ADI I F TGDHGD  PFDGP GTLAHAF+P     G  H D  E W               +L +VA HE GH LGL HS+   A+MYP+          L  DD++GIQALYG    F G
Sbjct:  165 ADIMISFETGDHGDSYPFDGPRGTLAHAFAPGEGLGGDTHFDNAEKWT--------MGMNGFNLFTVAAHEFGHALGLAHSTDPSALMYPTYKYQNPYGFHLPKDDVKGIQALYGPRKTFTG 278          
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP7_RAT (Matrilysin OS=Rattus norvegicus GN=Mmp7 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.182e-20
Identity = 57/116 (49.14%), Postives = 63/116 (54.31%), Query Frame = 3
Query:    3 TADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSG-SRKVELANDDIQGIQALYG 338
            TADI IGF  GDHGD  PFDGP  TL HAF+P     G  H D DE W               +   VA HE+GH LGLGHSSV  ++MYP+     S    L  DDI GIQ LYG
Sbjct:  154 TADIIIGFARGDHGDNFPFDGPGNTLGHAFAPGPGLGGDAHFDKDEYWT-------DGEDSGVNFLFVATHELGHSLGLGHSSVPSSVMYPTYQGDHSEDFSLTKDDIAGIQKLYG 262          
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP20_BOVIN (Matrix metalloproteinase-20 OS=Bos taurus GN=MMP20 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.017e-20
Identity = 56/122 (45.90%), Postives = 66/122 (54.10%), Query Frame = 3
Query:    6 ADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYGNNPNFNG 359
            ADI I F TGDHGD  PFDGP GTLAHAF+P     G  H D  E W               +L +VA HE GH LGL HS+   A+M+P+          L  DD++GIQALYG    F+G
Sbjct:  163 ADIMISFETGDHGDSYPFDGPRGTLAHAFAPGEGLGGDTHFDNAEKWT--------MGTNGFNLFTVAAHEFGHALGLAHSTDPSALMFPTYKYQNPYGFRLPKDDVKGIQALYGPRRAFSG 276          
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP1_PIG (Interstitial collagenase OS=Sus scrofa GN=MMP1 PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 3.440e-20
Identity = 60/130 (46.15%), Postives = 70/130 (53.85%), Query Frame = 3
Query:    6 ADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPS-ISSGSRKVELANDDIQGIQALYGNNPNFNGSSAPTDQQ 383
            ADI I F  GDH D  PFDGP G LAHAF P     G  H D DE W               +L  VA HE+GH LGL HS+   A+MYP+ I +G   V+L+ DDI GIQA+YG + N    S P   Q
Sbjct:  157 ADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWT--------KNFRDYNLYRVAAHELGHSLGLSHSTDIGALMYPNYIYTGD--VQLSQDDIDGIQAIYGPSENPVQPSGPQTPQ 276          
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP1_RABIT (Interstitial collagenase OS=Oryctolagus cuniculus GN=MMP1 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.493e-20
Identity = 56/118 (47.46%), Postives = 65/118 (55.08%), Query Frame = 3
Query:    6 ADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGSRKVELANDDIQGIQALYGNNPN 350
            ADI I F  GDH D  PFDGP G LAHAF P     G  H D D+ W               +L  VA HE+GH LGL HS+   A+MYP+    S  V+LA DDI GIQA+YG + N
Sbjct:  156 ADIMISFVRGDHRDNSPFDGPEGQLAHAFQPGLGIGGDVHFDEDDRWT--------KDFRNYNLYRVAAHELGHSLGLSHSTDIGALMYPNYMF-SGDVQLAQDDIDGIQAIYGPSQN 264          
The following BLAST results are available for this feature:
BLAST of FC873519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
MEP1_SOYBN9.650e-3160.00Metalloendoproteinase 1 OS=Glycine max PE=1 SV=2[more]
MMP20_MOUSE1.069e-2147.54Matrix metalloproteinase-20 OS=Mus musculus GN=Mmp... [more]
MMP7_HUMAN1.824e-2146.67Matrilysin OS=Homo sapiens GN=MMP7 PE=1 SV=1[more]
MMP1_HUMAN2.382e-2149.15Interstitial collagenase OS=Homo sapiens GN=MMP1 P... [more]
HE_PARLI2.382e-2145.04Hatching enzyme OS=Paracentrotus lividus PE=1 SV=1[more]
MMP20_PIG4.064e-2146.72Matrix metalloproteinase-20 OS=Sus scrofa GN=MMP20... [more]
MMP7_RAT1.182e-2049.14Matrilysin OS=Rattus norvegicus GN=Mmp7 PE=2 SV=1[more]
MMP20_BOVIN2.017e-2045.90Matrix metalloproteinase-20 OS=Bos taurus GN=MMP20... [more]
MMP1_PIG3.440e-2046.15Interstitial collagenase OS=Sus scrofa GN=MMP1 PE=... [more]
MMP1_RABIT4.493e-2047.46Interstitial collagenase OS=Oryctolagus cuniculus ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CG10FM2 AbsDev Citrus clementina cDNA clone KN0AAI1CG10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873519 ID=FC873519; Name=FC873519; organism=Citrus clementina; type=EST; length=614bp
CGACCGCCGATATCAGGATCGGGTTCTTTACTGGCGATCACGGTGACGGC
GAGCCGTTTGATGGGCCTATGGGCACGCTGGCGCACGCCTTCTCGCCACC
AAATGGACGGTTCCATTTAGACGGCGACGAGAACTGGGTAATCACGAGTG
GTACTACAACGTCGATATCGATGTCGGCGATTGATCTTGAGTCAGTTGCT
GTTCATGAGATTGGCCACTTGTTAGGGTTGGGGCATTCATCTGTTGAAGA
TGCGATAATGTACCCTTCAATTTCTTCTGGATCCAGGAAAGTTGAATTGG
CCAACGATGATATACAGGGGATCCAGGCCCTGTACGGTAATAATCCAAAT
TTCAACGGCTCATCTGCGCCGACCGATCAACAGAGGGACACCAGCGATGC
CCATGGGGCTTATTTTTTGGGCTCTTGTTTGGGCCTGAGTTTCTTCGTGG
TGGCCGCTGTTTTGGGCCTGTAGATTTTTTAAATTAATTTATTATTTTTT
TTAGGGATATATTATTGCCTGAGATATTTGTTTCTGCTTCCATTCCATTT
GCTTGTGGAAGCAATTATAATATATCCGGCAACAAGCTTTGGTTTCAAAA
AAAAAAAAAAAAAA
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