FC873519
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MEP1_SOYBN (Metalloendoproteinase 1 OS=Glycine max PE=1 SV=2) HSP 1 Score: 133.265 bits (334), Expect = 9.650e-31 Identity = 69/115 (60.00%), Postives = 77/115 (66.96%), Query Frame = 3 Query: 3 TADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPPNGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGSRKVELANDDIQGIQALYGNNP 347 TA+I+I F + +HGD PFDGP G L HAF+P +GR H D DE WV DLESVAVHEIGHLLGLGHSS AIMYPSI +RKV LA DDI GI+ LYG NP Sbjct: 191 TANIKILFASKNHGDPYPFDGPGGILGHAFAPTDGRCHFDADEYWVASGDVTKSPVTSAFDLESVAVHEIGHLLGLGHSSDLRAIMYPSIPPRTRKVNLAQDDIDGIRKLYGINP 305
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP20_MOUSE (Matrix metalloproteinase-20 OS=Mus musculus GN=Mmp20 PE=2 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.069e-21 Identity = 58/122 (47.54%), Postives = 67/122 (54.92%), Query Frame = 3 Query: 6 ADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYGNNPNFNG 359 ADI I F TGDHGD PFDGP GTLAHAF+P G H D E W +L +VA HE GH LGLGHS+ A+MYP+ + L DD++GIQALYG F G Sbjct: 164 ADIMISFETGDHGDSYPFDGPRGTLAHAFAPGEGLGGDTHFDNAEKWT--------MGTNGFNLFTVAAHEFGHALGLGHSTDPSALMYPTYKYQNPYRFHLPKDDVKGIQALYGPRKIFPG 277
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP7_HUMAN (Matrilysin OS=Homo sapiens GN=MMP7 PE=1 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 1.824e-21 Identity = 56/120 (46.67%), Postives = 68/120 (56.67%), Query Frame = 3 Query: 3 TADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGS-RKVELANDDIQGIQALYGNNPN 350 TADI IGF G HGD PFDGP TLAHAF+P G H D DE W + A HE+GH LG+GHSS +A+MYP+ +G + +L+ DDI+GIQ LYG N Sbjct: 151 TADIMIGFARGAHGDSYPFDGPGNTLAHAFAPGTGLGGDAHFDEDERWT-------DGSSLGINFLYAATHELGHSLGMGHSSDPNAVMYPTYGNGDPQNFKLSQDDIKGIQKLYGKRSN 263
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP1_HUMAN (Interstitial collagenase OS=Homo sapiens GN=MMP1 PE=1 SV=3) HSP 1 Score: 102.064 bits (253), Expect = 2.382e-21 Identity = 58/118 (49.15%), Postives = 66/118 (55.93%), Query Frame = 3 Query: 6 ADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGSRKVELANDDIQGIQALYGNNPN 350 ADI I F GDH D PFDGP G LAHAF P G H D DE W +L VA HE+GH LGL HS+ A+MYPS + S V+LA DDI GIQA+YG + N Sbjct: 157 ADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWT--------NNFREYNLHRVAAHELGHSLGLSHSTDIGALMYPSYTF-SGDVQLAQDDIDGIQAIYGRSQN 265
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: HE_PARLI (Hatching enzyme OS=Paracentrotus lividus PE=1 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.382e-21 Identity = 59/131 (45.04%), Postives = 70/131 (53.44%), Query Frame = 3 Query: 3 TADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPPNGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGSRKVELANDDIQGIQALYGNNPNFNGSSAPTDQQRDTS 395 + DIRI F + DHGDG FDG G LAHAF P NG H D E W +L VA HE GH LGL HS+V A+MYP L NDDI GI++LYG+N +GS T +R T+ Sbjct: 223 SVDIRIKFGSYDHGDGISFDGRGGVLAHAFLPRNGDAHFDDSETWTEGTRSGT-------NLFQVAAHEFGHSLGLYHSTVRSALMYPYYQGYVPNFRLDNDDIAGIRSLYGSN---SGSGTTTTTRRPTT 343
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP20_PIG (Matrix metalloproteinase-20 OS=Sus scrofa GN=MMP20 PE=2 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 4.064e-21 Identity = 57/122 (46.72%), Postives = 65/122 (53.28%), Query Frame = 3 Query: 6 ADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYGNNPNFNG 359 ADI I F TGDHGD PFDGP GTLAHAF+P G H D E W +L +VA HE GH LGL HS+ A+MYP+ L DD++GIQALYG F G Sbjct: 165 ADIMISFETGDHGDSYPFDGPRGTLAHAFAPGEGLGGDTHFDNAEKWT--------MGMNGFNLFTVAAHEFGHALGLAHSTDPSALMYPTYKYQNPYGFHLPKDDVKGIQALYGPRKTFTG 278
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP7_RAT (Matrilysin OS=Rattus norvegicus GN=Mmp7 PE=2 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.182e-20 Identity = 57/116 (49.14%), Postives = 63/116 (54.31%), Query Frame = 3 Query: 3 TADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSG-SRKVELANDDIQGIQALYG 338 TADI IGF GDHGD PFDGP TL HAF+P G H D DE W + VA HE+GH LGLGHSSV ++MYP+ S L DDI GIQ LYG Sbjct: 154 TADIIIGFARGDHGDNFPFDGPGNTLGHAFAPGPGLGGDAHFDKDEYWT-------DGEDSGVNFLFVATHELGHSLGLGHSSVPSSVMYPTYQGDHSEDFSLTKDDIAGIQKLYG 262
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP20_BOVIN (Matrix metalloproteinase-20 OS=Bos taurus GN=MMP20 PE=1 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.017e-20 Identity = 56/122 (45.90%), Postives = 66/122 (54.10%), Query Frame = 3 Query: 6 ADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSIS-SGSRKVELANDDIQGIQALYGNNPNFNG 359 ADI I F TGDHGD PFDGP GTLAHAF+P G H D E W +L +VA HE GH LGL HS+ A+M+P+ L DD++GIQALYG F+G Sbjct: 163 ADIMISFETGDHGDSYPFDGPRGTLAHAFAPGEGLGGDTHFDNAEKWT--------MGTNGFNLFTVAAHEFGHALGLAHSTDPSALMFPTYKYQNPYGFRLPKDDVKGIQALYGPRRAFSG 276
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP1_PIG (Interstitial collagenase OS=Sus scrofa GN=MMP1 PE=1 SV=2) HSP 1 Score: 98.2117 bits (243), Expect = 3.440e-20 Identity = 60/130 (46.15%), Postives = 70/130 (53.85%), Query Frame = 3 Query: 6 ADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPS-ISSGSRKVELANDDIQGIQALYGNNPNFNGSSAPTDQQ 383 ADI I F GDH D PFDGP G LAHAF P G H D DE W +L VA HE+GH LGL HS+ A+MYP+ I +G V+L+ DDI GIQA+YG + N S P Q Sbjct: 157 ADIMISFVRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWT--------KNFRDYNLYRVAAHELGHSLGLSHSTDIGALMYPNYIYTGD--VQLSQDDIDGIQAIYGPSENPVQPSGPQTPQ 276
BLAST of FC873519 vs. ExPASy Swiss-Prot
Match: MMP1_RABIT (Interstitial collagenase OS=Oryctolagus cuniculus GN=MMP1 PE=2 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 4.493e-20 Identity = 56/118 (47.46%), Postives = 65/118 (55.08%), Query Frame = 3 Query: 6 ADIRIGFFTGDHGDGEPFDGPMGTLAHAFSPP---NGRFHLDGDENWVXXXXXXXXXXXXXXDLESVAVHEIGHLLGLGHSSVEDAIMYPSISSGSRKVELANDDIQGIQALYGNNPN 350 ADI I F GDH D PFDGP G LAHAF P G H D D+ W +L VA HE+GH LGL HS+ A+MYP+ S V+LA DDI GIQA+YG + N Sbjct: 156 ADIMISFVRGDHRDNSPFDGPEGQLAHAFQPGLGIGGDVHFDEDDRWT--------KDFRNYNLYRVAAHELGHSLGLSHSTDIGALMYPNYMF-SGDVQLAQDDIDGIQAIYGPSQN 264 The following BLAST results are available for this feature:
BLAST of FC873519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 80
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Sequences
The
following sequences are available for this feature:
EST sequence >FC873519 ID=FC873519; Name=FC873519; organism=Citrus clementina; type=EST; length=614bpback to top |