FC873530

Overview
NameFC873530
Unique NameFC873530
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length863
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC873530_ssr553 microsatellite FC873530_ssr553:553..564. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12236 contig Ccv1_Contig12236:872..1734. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873530 vs. ExPASy Swiss-Prot
Match: CHID1_XENLA (Chitinase domain-containing protein 1 OS=Xenopus laevis GN=chid1 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 4.114e-32
Identity = 69/198 (34.85%), Postives = 100/198 (50.51%), Query Frame = 2
Query:   14 KEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGP---PHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGPHNPGPNAPLKWISFTLQLLLGSPGIGTRSLARKIFLGINFYGNDFVLSEASGGGAITGREYLNLLQKHKPALQWEKNSGEHFFFFSDENQVKHAVF 598
            K+  +DG V+E WS           + R   +  +  +G ALHS          L  + VI P   P +++     FG  +   L+  VD FSLMTYD+S P  PGPN+P+ W+   +QLL   P    R   +KI LG++FYG D+    A+ G  I G  Y+ +L++HKP L W++   EH+  +      KHAVF
Sbjct:  182 KDEHFDGFVVEVWSQLGG-------QKRQELVHLLIHIGEALHSAK--------LHFILVIPPAVAPGTDQLGM--FGRKEFDQLAPVVDSFSLMTYDYSSPQRPGPNSPISWVQACVQLL--DPESKWR---KKILLGLHFYGMDYSALGAT-GEPILGNRYVEILKEHKPKLLWDQQIAEHYLEYKKNKGGKHAVF 356          

HSP 2 Score: 49.2914 bits (116), Expect = 4.114e-32
Identity = 23/40 (57.50%), Postives = 29/40 (72.50%), Query Frame = 1
Query:  574 KSSQACCVYPSLISISMRLEEAKLWGTGIAIWEIGQGLDY 693
            K  +    YP+L SI +RL+ A+  GTGIAIWE+GQGLDY
Sbjct:  349 KGGKHAVFYPTLKSIQVRLDLAEELGTGIAIWELGQGLDY 388          
BLAST of FC873530 vs. ExPASy Swiss-Prot
Match: CHID1_XENTR (Chitinase domain-containing protein 1 OS=Xenopus tropicalis GN=chid1 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.512e-31
Identity = 70/197 (35.53%), Postives = 98/197 (49.75%), Query Frame = 2
Query:   14 KEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPH--DFGPVDLQSLSDAVDGFSLMTYDFSGPHNPGPNAPLKWISFTLQLLLGSPGIGTRSLARKIFLGINFYGNDFVLSEASGGGAITGREYLNLLQKHKPALQWEKNSGEHFFFFSDENQVKHAVF 598
            K+  +DG V+E WS           + R   +  +  +G AL        R   L+ + VI PP       H   FG  +   L+  VD FSLMTYD+S P  PGPN+P+ W+   +QLL   P    R   +KI LG++FYG D+    AS G  I G  Y+ +L++HKP L W++   EH+  +      KHAVF
Sbjct:  183 KDERFDGFVVEVWSQLGG-------QKRQELVHLLTHIGEAL--------RLAKLRFILVI-PPALAPGTDHLGMFGRKEFDQLAPVVDSFSLMTYDYSSPQRPGPNSPITWVQACIQLL--DPESKWR---KKILLGLHFYGMDYSALGAS-GEPILGNRYIEILKEHKPKLLWDQQIAEHYLEYKKNKGGKHAVF 357          

HSP 2 Score: 46.595 bits (109), Expect = 7.512e-31
Identity = 21/40 (52.50%), Postives = 29/40 (72.50%), Query Frame = 1
Query:  574 KSSQACCVYPSLISISMRLEEAKLWGTGIAIWEIGQGLDY 693
            K  +    +P+L SI +RL+ A+  GTGI+IWE+GQGLDY
Sbjct:  350 KGGKHAVFFPTLKSIQVRLDLAEELGTGISIWELGQGLDY 389          
BLAST of FC873530 vs. ExPASy Swiss-Prot
Match: CHID1_DANRE (Chitinase domain-containing protein 1 OS=Danio rerio GN=chid1 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.371e-29
Identity = 74/201 (36.82%), Postives = 98/201 (48.76%), Query Frame = 2
Query:    2 LTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKF-QPHDFGPVDLQSLSDAVDGFSLMTYDFSGPHNPGPNAPLKWI-SFTLQLLLGSPGIGTRSLARKIFLGINFYGNDFVLSEASGGGAITGREYLNLLQKHKPALQWEKNSGEHFFFFSDENQVKHAVF 598
            L   K   +DG  LE WS              N   E +  + +   ++N+ +     L  V VI P  +    QP  FG  D + L+  VD FSLMTYD+SGP  PGP+APL W+    LQL              KI LG+N YG DF  S   G   + G   + LL++ KP LQW++N+GEHFF +   N VKH V+
Sbjct:  177 LEVAKAEGFDGYTLELWSQLGG----------NKRKELVHLVTHLCETLNAGK-----LTCVLVIPPSVAPGTGQPGMFGRDDFEKLAPVVDAFSLMTYDYSGPGRPGPSAPLPWVRECVLQL------APENQWRHKILLGVNMYGLDF--SSHGGAEPLLGARCIELLKEVKPKLQWDENTGEHFFNYKRNNGVKHVVY 354          

HSP 2 Score: 41.2022 bits (95), Expect = 1.371e-29
Identity = 17/32 (53.12%), Postives = 24/32 (75.00%), Query Frame = 1
Query:  598 YPSLISISMRLEEAKLWGTGIAIWEIGQGLDY 693
            YP+L  + +R+  A   GTGI++WE+GQGLDY
Sbjct:  355 YPTLKFLQLRISLAAELGTGISMWELGQGLDY 386          
BLAST of FC873530 vs. ExPASy Swiss-Prot
Match: CHID1_PONAB (Chitinase domain-containing protein 1 OS=Pongo abelii GN=CHID1 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.025e-29
Identity = 66/201 (32.84%), Postives = 97/201 (48.26%), Query Frame = 2
Query:   14 KEMEYDGIVLESWSTWTAY---GILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGP---PHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGPHNPGPNAPLKWISFTLQLLLGSPGIGTRSLARKIFLGINFYGNDFVLSEASGGGAITGREYLNLLQKHKPALQWEKNSGEHFFFFSDENQVKHAVF 598
            K   +DG V+E W+   +    G++H           +  L  ALH           L  + VI P   P +++     F   + + L+  +DGFSLMTYD+S  H PGPNAPL W+   +Q+L   P    RS   KI LG+NFYG D+  S+      + G  Y+  L+ H+P + W+  + EHFF +      +H VF
Sbjct:  182 KNQHFDGFVVEVWNQLLSQKRVGLIH----------MLTHLAEALHQAR--------LLALLVIPPAITPGTDQLGM--FTHKEFEQLAPVLDGFSLMTYDYSTAHQPGPNAPLSWVRACVQVL--DPKSKWRS---KILLGLNFYGMDYATSK-DAREPVVGARYIQTLKDHRPRMVWDSQASEHFFEYKKSRSGRHVVF 356          

HSP 2 Score: 46.595 bits (109), Expect = 3.025e-29
Identity = 20/40 (50.00%), Postives = 29/40 (72.50%), Query Frame = 1
Query:  574 KSSQACCVYPSLISISMRLEEAKLWGTGIAIWEIGQGLDY 693
            +S +    YP+L S+ +RLE A+  G G++IWE+GQGLDY
Sbjct:  349 RSGRHVVFYPTLKSLQVRLELARELGVGVSIWELGQGLDY 388          
BLAST of FC873530 vs. ExPASy Swiss-Prot
Match: CHID1_HUMAN (Chitinase domain-containing protein 1 OS=Homo sapiens GN=CHID1 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.025e-29
Identity = 66/201 (32.84%), Postives = 97/201 (48.26%), Query Frame = 2
Query:   14 KEMEYDGIVLESWSTWTAY---GILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGP---PHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGPHNPGPNAPLKWISFTLQLLLGSPGIGTRSLARKIFLGINFYGNDFVLSEASGGGAITGREYLNLLQKHKPALQWEKNSGEHFFFFSDENQVKHAVF 598
            K   +DG V+E W+   +    G++H           +  L  ALH           L  + VI P   P +++     F   + + L+  +DGFSLMTYD+S  H PGPNAPL W+   +Q+L   P    RS   KI LG+NFYG D+  S+      + G  Y+  L+ H+P + W+  + EHFF +      +H VF
Sbjct:  182 KNQHFDGFVVEVWNQLLSQKRVGLIH----------MLTHLAEALHQAR--------LLALLVIPPAITPGTDQLGM--FTHKEFEQLAPVLDGFSLMTYDYSTAHQPGPNAPLSWVRACVQVL--DPKSKWRS---KILLGLNFYGMDYATSK-DAREPVVGARYIQTLKDHRPRMVWDSQASEHFFEYKKSRSGRHVVF 356          

HSP 2 Score: 46.595 bits (109), Expect = 3.025e-29
Identity = 20/40 (50.00%), Postives = 29/40 (72.50%), Query Frame = 1
Query:  574 KSSQACCVYPSLISISMRLEEAKLWGTGIAIWEIGQGLDY 693
            +S +    YP+L S+ +RLE A+  G G++IWE+GQGLDY
Sbjct:  349 RSGRHVVFYPTLKSLQVRLELARELGVGVSIWELGQGLDY 388          
BLAST of FC873530 vs. ExPASy Swiss-Prot
Match: CHID1_RAT (Chitinase domain-containing protein 1 OS=Rattus norvegicus GN=Chid1 PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 1.918e-28
Identity = 67/201 (33.33%), Postives = 97/201 (48.26%), Query Frame = 2
Query:   14 KEMEYDGIVLESWSTWTAY---GILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGP---PHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGPHNPGPNAPLKWISFTLQLLLGSPGIGTRSLARKIFLGINFYGNDFVLSEASGGGAITGREYLNLLQKHKPALQWEKNSGEHFFFFSDENQVKHAVF 598
            K   +DG V+E WS   +    G++H           +  L  ALH           L ++ VI P   P +++     F   + + L+  +DGFSLMTYD+S    PGPNAPL WI   +Q+L   P    RS   KI LG+NFYG D+  S+      + G  Y+  L+ H+P + W+  + EHFF +      +H VF
Sbjct:  182 KNQHFDGFVVEVWSQLLSQKHVGLIH----------MLTHLAEALHQAR--------LLVILVIPPAVTPGTDQLGM--FTHKEFEQLAPILDGFSLMTYDYSTSQQPGPNAPLSWIRACVQVL--DPKSQWRS---KILLGLNFYGMDYAASK-DAREPVIGARYIQTLKDHRPRVVWDSQAAEHFFEYKKNRGGRHVVF 356          

HSP 2 Score: 45.8246 bits (107), Expect = 1.918e-28
Identity = 19/32 (59.38%), Postives = 26/32 (81.25%), Query Frame = 1
Query:  598 YPSLISISMRLEEAKLWGTGIAIWEIGQGLDY 693
            YP+L S+ +RLE A+  G G++IWE+GQGLDY
Sbjct:  357 YPTLKSLQVRLELARELGVGVSIWELGQGLDY 388          
BLAST of FC873530 vs. ExPASy Swiss-Prot
Match: CHID1_MOUSE (Chitinase domain-containing protein 1 OS=Mus musculus GN=Chid1 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.497e-28
Identity = 67/201 (33.33%), Postives = 97/201 (48.26%), Query Frame = 2
Query:   14 KEMEYDGIVLESWSTWTAY---GILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGP---PHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGPHNPGPNAPLKWISFTLQLLLGSPGIGTRSLARKIFLGINFYGNDFVLSEASGGGAITGREYLNLLQKHKPALQWEKNSGEHFFFFSDENQVKHAVF 598
            K   +DG V+E WS   +    G++H           +  L  ALH           L ++ VI P   P +++     F   + + L+  +DGFSLMTYD+S    PGPNAPL WI   +Q+L   P    RS   KI LG+NFYG D+  S+      + G  Y+  L+ H+P + W+  + EHFF +      +H VF
Sbjct:  182 KNQHFDGFVVEVWSQLLSQKHVGLIH----------MLTHLAEALHQAR--------LLVILVIPPAVTPGTDQLGM--FTHKEFEQLAPILDGFSLMTYDYSTSQQPGPNAPLSWIRACVQVL--DPKSQWRS---KILLGLNFYGMDYAASK-DAREPVIGARYVQTLKDHRPRVVWDSQAAEHFFEYKKNRGGRHVVF 356          

HSP 2 Score: 45.8246 bits (107), Expect = 2.497e-28
Identity = 19/32 (59.38%), Postives = 26/32 (81.25%), Query Frame = 1
Query:  598 YPSLISISMRLEEAKLWGTGIAIWEIGQGLDY 693
            YP+L S+ +RLE A+  G G++IWE+GQGLDY
Sbjct:  357 YPTLKSLQVRLELARELGVGVSIWELGQGLDY 388          
BLAST of FC873530 vs. ExPASy Swiss-Prot
Match: CHID1_BOVIN (Chitinase domain-containing protein 1 OS=Bos taurus GN=CHID1 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.745e-26
Identity = 65/202 (32.18%), Postives = 96/202 (47.52%), Query Frame = 2
Query:   14 KEMEYDGIVLESWSTWTAY---GILHDPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPH----SEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGPHNPGPNAPLKWISFTLQLLLGSPGIGTRSLARKIFLGINFYGNDFVLSEASGGGAITGREYLNLLQKHKPALQWEKNSGEHFFFFSDENQVKHAVF 598
            K   +DG+V+E W+        G++H           +  +  ALH         Q   LV+++ PP     + K     F   + + L+  +DGFSLMTYD+S     GPNAPL W+   +Q+L   P    RS   KI LG+NFYG D+  S+      I G  Y+  L+ H+P + W+  + EHFF +      +H VF
Sbjct:  182 KSQHFDGLVVEVWNQLLVQKHAGLIH----------LLTHMAEALH---------QARLLVFLVIPPAVAPGTNKLGM--FTNTEFEQLAPVLDGFSLMTYDYSTAQPAGPNAPLPWVRACVQVL--DPKSKWRS---KILLGLNFYGMDYSASK-DAREPIIGARYIQTLKDHRPQVVWDSQAAEHFFEYKKSRGGRHVVF 356          

HSP 2 Score: 43.8986 bits (102), Expect = 3.745e-26
Identity = 19/32 (59.38%), Postives = 25/32 (78.12%), Query Frame = 1
Query:  598 YPSLISISMRLEEAKLWGTGIAIWEIGQGLDY 693
            YP+L S+  RLE A+  G G++IWE+GQGLDY
Sbjct:  357 YPTLKSLQERLELAQELGVGLSIWELGQGLDY 388          
BLAST of FC873530 vs. ExPASy Swiss-Prot
Match: CHID1_DICDI (Chitinase domain-containing protein 1 OS=Dictyostelium discoideum GN=chid1 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.016e-25
Identity = 66/189 (34.92%), Postives = 107/189 (56.61%), Query Frame = 2
Query:   14 KEMEYDGIVLESWSTWTAYGILH-DPELRNMALEFIKQLGNALHSVNSVRNRKQHLQLVYVIGPPHSEKFQPHDFGPVDLQSLSDAVDGFSLMTYDFSGPHNPGPNAPLKWISFTLQLLLGSPGIGTRSLARKIFLGINFYGNDFVLSEASGGGAITGREYLNLLQKHK-PALQWEKNSGEHFFFFSDE 574
            K+  YDG+V+E        GI+H + +LR+    F+  L   LHS+      K+ + ++Y    P  +K Q   FG  D + LS+ +DG SLMTYDF GP + G NAP  W+   L+ LL +   G    ++KIF+GI FYG  + + E     AI G E++++L+++K   L++++N+ EH F + ++
Sbjct:  179 KKNNYDGLVIE--------GIVHINKQLRD---PFLISLSEKLHSIG-----KEIILVIY----PFRQKGQETGFGAKDFELLSNHIDGVSLMTYDF-GP-SGGMNAPKVWVEDNLKFLLPN---GENKNSKKIFMGIPFYG--YKIGENDQSDAIVGSEFISVLKQNKSKKLKFDQNTHEHIFTYKNK 340          

HSP 2 Score: 44.2838 bits (103), Expect = 4.016e-25
Identity = 20/40 (50.00%), Postives = 26/40 (65.00%), Query Frame = 1
Query:  574 KSSQACCVYPSLISISMRLEEAKLWGTGIAIWEIGQGLDY 693
            K+ Q    YPSL+ I  R++ A  +   I+IWEIGQGLDY
Sbjct:  341 KNQQVSMTYPSLLFIEDRIQLANKYKVSISIWEIGQGLDY 380          
The following BLAST results are available for this feature:
BLAST of FC873530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
CHID1_XENLA4.114e-3234.85Chitinase domain-containing protein 1 OS=Xenopus l... [more]
CHID1_XENTR7.512e-3135.53Chitinase domain-containing protein 1 OS=Xenopus t... [more]
CHID1_DANRE1.371e-2936.82Chitinase domain-containing protein 1 OS=Danio rer... [more]
CHID1_PONAB3.025e-2932.84Chitinase domain-containing protein 1 OS=Pongo abe... [more]
CHID1_HUMAN3.025e-2932.84Chitinase domain-containing protein 1 OS=Homo sapi... [more]
CHID1_RAT1.918e-2833.33Chitinase domain-containing protein 1 OS=Rattus no... [more]
CHID1_MOUSE2.497e-2833.33Chitinase domain-containing protein 1 OS=Mus muscu... [more]
CHID1_BOVIN3.745e-2632.18Chitinase domain-containing protein 1 OS=Bos tauru... [more]
CHID1_DICDI4.016e-2534.92Chitinase domain-containing protein 1 OS=Dictyoste... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI3BD12FM1 AbsDev Citrus clementina cDNA clone KN0AAI3BD12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873530 ID=FC873530; Name=FC873530; organism=Citrus clementina; type=EST; length=863bp
ATTAACAGAGTGCAAGGAAATGGAATATGATGGTATAGTGCTAGAGTCTT
GGTCCACGTGGACAGCTTATGGCATTTTGCATGATCCAGAATTGCGGAAT
ATGGCACTAGAGTTTATAAAACAACTTGGAAATGCGCTGCACAGTGTGAA
CTCAGTGAGAAACAGGAAGCAACATTTGCAGTTGGTCTATGTCATAGGTC
CACCACATTCAGAGAAGTTCCAACCACATGACTTTGGGCCAGTGGATCTG
CAGAGCTTGAGTGATGCCGTAGATGGTTTCTCATTAATGACTTATGACTT
CTCAGGTCCCCATAACCCTGGTCCTAATGCTCCACTGAAGTGGATAAGTT
TTACCCTGCAGCTGCTCCTTGGTAGCCCTGGCATTGGCACTCGTAGCTTA
GCTAGGAAGATATTTCTTGGCATCAATTTCTATGGAAATGATTTTGTCCT
TTCAGAAGCATCAGGTGGTGGAGCCATCACTGGAAGGGAGTACCTCAACT
TATTGCAGAAGCACAAGCCTGCACTCCAGTGGGAAAAGAACAGTGGGGAG
CACTTCTTCTTCTTCTCTGATGAAAATCAAGTCAAGCATGCTGTGTTTAC
CCTTCATTAATATCAATTTCCATGCGACTAGAGGAAGCTAAGTTATGGGG
AACTGGCATTGCCATCTGGGAAATTGGGCAAGGTTTGGATTACTTTTTTG
ATCTACTGTAACACCAACTACTACGGTTCTTCTTCTAACACTGTAAGTAT
AATTTTAGGTATTCCTTTATATTTTTATCTTTCCAGTAAAAAAGGTAACT
AACATTTGAAAGACTCCTTATAAAATCTACATTTAGGCAAAAAAAAAAAA
AAAAAAAAAAAAA
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