FC873553
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC873553 vs. ExPASy Swiss-Prot
Match: COPZ1_ARATH (Coatomer subunit zeta-1 OS=Arabidopsis thaliana GN=At1g60970 PE=2 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 7.368e-46 Identity = 88/110 (80.00%), Postives = 100/110 (90.91%), Query Frame = 1 Query: 61 MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKK 390 M+ P +KNILLLDSEGKRVAVKYYS+DWPTNSA+EAFEK+VFTKTQKTNARTE E+ LE N++VYKFVQDLHFFVTGGE+ENELILA+VL+G FDAV LLLR NVDK+ Sbjct: 1 MELPPKVKNILLLDSEGKRVAVKYYSDDWPTNSAQEAFEKSVFTKTQKTNARTEVEVTALENNIVVYKFVQDLHFFVTGGEEENELILASVLEGLFDAVTLLLRSNVDKR 110
BLAST of FC873553 vs. ExPASy Swiss-Prot
Match: COPZ2_ARATH (Coatomer subunit zeta-2 OS=Arabidopsis thaliana GN=At3g09800 PE=2 SV=1) HSP 1 Score: 182.956 bits (463), Expect = 1.641e-45 Identity = 88/110 (80.00%), Postives = 100/110 (90.91%), Query Frame = 1 Query: 58 SMDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDK 387 S D+CP +KNILLLDSEGKRVAVKYYS+DWPTN+AK +FEK VF+KT KTNARTEAEI +L+ N+IVYKF QDLHFFVTGGE+ENELILA+VLQGFFDAV LLLR NV+K Sbjct: 2 SPDSCPLVKNILLLDSEGKRVAVKYYSDDWPTNAAKLSFEKYVFSKTSKTNARTEAEITLLDSNIIVYKFAQDLHFFVTGGENENELILASVLQGFFDAVALLLRSNVEK 111
BLAST of FC873553 vs. ExPASy Swiss-Prot
Match: COPZ3_ARATH (Coatomer subunit zeta-3 OS=Arabidopsis thaliana GN=At4g08520 PE=2 SV=1) HSP 1 Score: 178.333 bits (451), Expect = 4.043e-44 Identity = 84/108 (77.78%), Postives = 98/108 (90.74%), Query Frame = 1 Query: 64 DTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDK 387 D+CP +KNILLLDSEGKRVAVKYYS+DW TN++K AFEK VF+KT KTNARTEAEI +LE N++VYKF QDLHFFVTGGE+ENEL+L++VLQGFFDAV LLLR NV+K Sbjct: 6 DSCPLVKNILLLDSEGKRVAVKYYSDDWATNASKLAFEKYVFSKTSKTNARTEAEITLLESNIVVYKFAQDLHFFVTGGENENELVLSSVLQGFFDAVALLLRNNVEK 113
BLAST of FC873553 vs. ExPASy Swiss-Prot
Match: COPZ1_ORYSJ (Coatomer subunit zeta-1 OS=Oryza sativa subsp. japonica GN=COPZ1 PE=2 SV=1) HSP 1 Score: 174.866 bits (442), Expect = 4.470e-43 Identity = 82/110 (74.55%), Postives = 98/110 (89.09%), Query Frame = 1 Query: 61 MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKK 390 M++CPS+KNILLLDSEGKRVAVKYY++DWPT SAK AFEK+VF KTQK A EAEI M +G+++VYKF+QDLHFFVTGGE+ENELILA+VLQGF DAV ++LR NVDK+ Sbjct: 1 MESCPSVKNILLLDSEGKRVAVKYYTDDWPTLSAKLAFEKSVFVKTQKATAGAEAEIVMFDGHIVVYKFIQDLHFFVTGGEEENELILASVLQGFTDAVDIILRNNVDKR 110
BLAST of FC873553 vs. ExPASy Swiss-Prot
Match: COPZ2_ORYSJ (Coatomer subunit zeta-2 OS=Oryza sativa subsp. japonica GN=COPZ2 PE=2 SV=1) HSP 1 Score: 173.711 bits (439), Expect = 9.958e-43 Identity = 81/111 (72.97%), Postives = 101/111 (90.99%), Query Frame = 1 Query: 58 SMDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKK 390 S ++CPS+KNILLLDSEGKRVAVKY+S+DW +N++K AFEK+VFTKT KTNAR+EAEI + +G ++VYKFVQDLHFFVT G+DENELI+A VLQGF D+VGLLLRG+V+K+ Sbjct: 5 SKESCPSVKNILLLDSEGKRVAVKYFSDDWSSNASKLAFEKSVFTKTLKTNARSEAEITLFDGYIVVYKFVQDLHFFVTAGDDENELIIANVLQGFSDSVGLLLRGDVEKR 115
BLAST of FC873553 vs. ExPASy Swiss-Prot
Match: COPZ3_ORYSJ (Coatomer subunit zeta-3 OS=Oryza sativa subsp. japonica GN=Os01g0838800 PE=2 SV=1) HSP 1 Score: 166.392 bits (420), Expect = 1.590e-40 Identity = 77/110 (70.00%), Postives = 97/110 (88.18%), Query Frame = 1 Query: 61 MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKK 390 M++CPS+KNIL+LDSEGKRVAVKYYS+DWP+ S+K+AFEK+VF KTQKT+ARTEAEI M + +VYKF+QDLHFFVTGG++ENELILA+VLQGF +A+ LLR V ++ Sbjct: 1 MESCPSVKNILVLDSEGKRVAVKYYSDDWPSLSSKQAFEKSVFAKTQKTSARTEAEIVMFDSYFVVYKFIQDLHFFVTGGDEENELILASVLQGFSEAIDYLLRNKVHRR 110
BLAST of FC873553 vs. ExPASy Swiss-Prot
Match: COPZ1_BOVIN (Coatomer subunit zeta-1 OS=Bos taurus GN=COPZ1 PE=1 SV=2) HSP 1 Score: 97.4413 bits (241), Expect = 9.070e-20 Identity = 49/105 (46.67%), Postives = 73/105 (69.52%), Query Frame = 1 Query: 76 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKK 390 ++K IL+LD++G R+ KYY + +P+ ++AFEK +F KT RT++EIA+LEG +VYK DL+F+V G ENEL+L TVL FD++ +LR NV+K+ Sbjct: 12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMTVLNCLFDSLSQMLRKNVEKR 112
BLAST of FC873553 vs. ExPASy Swiss-Prot
Match: COPZ1_PONAB (Coatomer subunit zeta-1 OS=Pongo abelii GN=COPZ1 PE=2 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 3.446e-19 Identity = 48/105 (45.71%), Postives = 72/105 (68.57%), Query Frame = 1 Query: 76 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKK 390 ++K IL+LD++G R+ KYY + +P+ ++AFEK +F KT RT++EIA+LEG +VYK DL+F+V G ENEL+L VL FD++ +LR NV+K+ Sbjct: 12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKR 112
BLAST of FC873553 vs. ExPASy Swiss-Prot
Match: COPZ1_MOUSE (Coatomer subunit zeta-1 OS=Mus musculus GN=Copz1 PE=2 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 3.446e-19 Identity = 48/105 (45.71%), Postives = 72/105 (68.57%), Query Frame = 1 Query: 76 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKK 390 ++K IL+LD++G R+ KYY + +P+ ++AFEK +F KT RT++EIA+LEG +VYK DL+F+V G ENEL+L VL FD++ +LR NV+K+ Sbjct: 12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKR 112
BLAST of FC873553 vs. ExPASy Swiss-Prot
Match: COPZ1_HUMAN (Coatomer subunit zeta-1 OS=Homo sapiens GN=COPZ1 PE=1 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 3.446e-19 Identity = 48/105 (45.71%), Postives = 72/105 (68.57%), Query Frame = 1 Query: 76 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKK 390 ++K IL+LD++G R+ KYY + +P+ ++AFEK +F KT RT++EIA+LEG +VYK DL+F+V G ENEL+L VL FD++ +LR NV+K+ Sbjct: 12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKR 112 The following BLAST results are available for this feature:
BLAST of FC873553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 14
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Sequences
The
following sequences are available for this feature:
EST sequence >FC873553 ID=FC873553; Name=FC873553; organism=Citrus clementina; type=EST; length=777bpback to top |