FC873553

Overview
NameFC873553
Unique NameFC873553
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length777
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1234 contig Ccv1_Contig1234:2..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873553 vs. ExPASy Swiss-Prot
Match: COPZ1_ARATH (Coatomer subunit zeta-1 OS=Arabidopsis thaliana GN=At1g60970 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 7.368e-46
Identity = 88/110 (80.00%), Postives = 100/110 (90.91%), Query Frame = 1
Query:   61 MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKK 390
            M+  P +KNILLLDSEGKRVAVKYYS+DWPTNSA+EAFEK+VFTKTQKTNARTE E+  LE N++VYKFVQDLHFFVTGGE+ENELILA+VL+G FDAV LLLR NVDK+
Sbjct:    1 MELPPKVKNILLLDSEGKRVAVKYYSDDWPTNSAQEAFEKSVFTKTQKTNARTEVEVTALENNIVVYKFVQDLHFFVTGGEEENELILASVLEGLFDAVTLLLRSNVDKR 110          
BLAST of FC873553 vs. ExPASy Swiss-Prot
Match: COPZ2_ARATH (Coatomer subunit zeta-2 OS=Arabidopsis thaliana GN=At3g09800 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.641e-45
Identity = 88/110 (80.00%), Postives = 100/110 (90.91%), Query Frame = 1
Query:   58 SMDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDK 387
            S D+CP +KNILLLDSEGKRVAVKYYS+DWPTN+AK +FEK VF+KT KTNARTEAEI +L+ N+IVYKF QDLHFFVTGGE+ENELILA+VLQGFFDAV LLLR NV+K
Sbjct:    2 SPDSCPLVKNILLLDSEGKRVAVKYYSDDWPTNAAKLSFEKYVFSKTSKTNARTEAEITLLDSNIIVYKFAQDLHFFVTGGENENELILASVLQGFFDAVALLLRSNVEK 111          
BLAST of FC873553 vs. ExPASy Swiss-Prot
Match: COPZ3_ARATH (Coatomer subunit zeta-3 OS=Arabidopsis thaliana GN=At4g08520 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.043e-44
Identity = 84/108 (77.78%), Postives = 98/108 (90.74%), Query Frame = 1
Query:   64 DTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDK 387
            D+CP +KNILLLDSEGKRVAVKYYS+DW TN++K AFEK VF+KT KTNARTEAEI +LE N++VYKF QDLHFFVTGGE+ENEL+L++VLQGFFDAV LLLR NV+K
Sbjct:    6 DSCPLVKNILLLDSEGKRVAVKYYSDDWATNASKLAFEKYVFSKTSKTNARTEAEITLLESNIVVYKFAQDLHFFVTGGENENELVLSSVLQGFFDAVALLLRNNVEK 113          
BLAST of FC873553 vs. ExPASy Swiss-Prot
Match: COPZ1_ORYSJ (Coatomer subunit zeta-1 OS=Oryza sativa subsp. japonica GN=COPZ1 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.470e-43
Identity = 82/110 (74.55%), Postives = 98/110 (89.09%), Query Frame = 1
Query:   61 MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKK 390
            M++CPS+KNILLLDSEGKRVAVKYY++DWPT SAK AFEK+VF KTQK  A  EAEI M +G+++VYKF+QDLHFFVTGGE+ENELILA+VLQGF DAV ++LR NVDK+
Sbjct:    1 MESCPSVKNILLLDSEGKRVAVKYYTDDWPTLSAKLAFEKSVFVKTQKATAGAEAEIVMFDGHIVVYKFIQDLHFFVTGGEEENELILASVLQGFTDAVDIILRNNVDKR 110          
BLAST of FC873553 vs. ExPASy Swiss-Prot
Match: COPZ2_ORYSJ (Coatomer subunit zeta-2 OS=Oryza sativa subsp. japonica GN=COPZ2 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 9.958e-43
Identity = 81/111 (72.97%), Postives = 101/111 (90.99%), Query Frame = 1
Query:   58 SMDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKK 390
            S ++CPS+KNILLLDSEGKRVAVKY+S+DW +N++K AFEK+VFTKT KTNAR+EAEI + +G ++VYKFVQDLHFFVT G+DENELI+A VLQGF D+VGLLLRG+V+K+
Sbjct:    5 SKESCPSVKNILLLDSEGKRVAVKYFSDDWSSNASKLAFEKSVFTKTLKTNARSEAEITLFDGYIVVYKFVQDLHFFVTAGDDENELIIANVLQGFSDSVGLLLRGDVEKR 115          
BLAST of FC873553 vs. ExPASy Swiss-Prot
Match: COPZ3_ORYSJ (Coatomer subunit zeta-3 OS=Oryza sativa subsp. japonica GN=Os01g0838800 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.590e-40
Identity = 77/110 (70.00%), Postives = 97/110 (88.18%), Query Frame = 1
Query:   61 MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKK 390
            M++CPS+KNIL+LDSEGKRVAVKYYS+DWP+ S+K+AFEK+VF KTQKT+ARTEAEI M +   +VYKF+QDLHFFVTGG++ENELILA+VLQGF +A+  LLR  V ++
Sbjct:    1 MESCPSVKNILVLDSEGKRVAVKYYSDDWPSLSSKQAFEKSVFAKTQKTSARTEAEIVMFDSYFVVYKFIQDLHFFVTGGDEENELILASVLQGFSEAIDYLLRNKVHRR 110          
BLAST of FC873553 vs. ExPASy Swiss-Prot
Match: COPZ1_BOVIN (Coatomer subunit zeta-1 OS=Bos taurus GN=COPZ1 PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 9.070e-20
Identity = 49/105 (46.67%), Postives = 73/105 (69.52%), Query Frame = 1
Query:   76 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKK 390
            ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG  +VYK   DL+F+V G   ENEL+L TVL   FD++  +LR NV+K+
Sbjct:   12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMTVLNCLFDSLSQMLRKNVEKR 112          
BLAST of FC873553 vs. ExPASy Swiss-Prot
Match: COPZ1_PONAB (Coatomer subunit zeta-1 OS=Pongo abelii GN=COPZ1 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.446e-19
Identity = 48/105 (45.71%), Postives = 72/105 (68.57%), Query Frame = 1
Query:   76 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKK 390
            ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG  +VYK   DL+F+V G   ENEL+L  VL   FD++  +LR NV+K+
Sbjct:   12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKR 112          
BLAST of FC873553 vs. ExPASy Swiss-Prot
Match: COPZ1_MOUSE (Coatomer subunit zeta-1 OS=Mus musculus GN=Copz1 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.446e-19
Identity = 48/105 (45.71%), Postives = 72/105 (68.57%), Query Frame = 1
Query:   76 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKK 390
            ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG  +VYK   DL+F+V G   ENEL+L  VL   FD++  +LR NV+K+
Sbjct:   12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKR 112          
BLAST of FC873553 vs. ExPASy Swiss-Prot
Match: COPZ1_HUMAN (Coatomer subunit zeta-1 OS=Homo sapiens GN=COPZ1 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.446e-19
Identity = 48/105 (45.71%), Postives = 72/105 (68.57%), Query Frame = 1
Query:   76 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKK 390
            ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG  +VYK   DL+F+V G   ENEL+L  VL   FD++  +LR NV+K+
Sbjct:   12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKR 112          
The following BLAST results are available for this feature:
BLAST of FC873553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
COPZ1_ARATH7.368e-4680.00Coatomer subunit zeta-1 OS=Arabidopsis thaliana GN... [more]
COPZ2_ARATH1.641e-4580.00Coatomer subunit zeta-2 OS=Arabidopsis thaliana GN... [more]
COPZ3_ARATH4.043e-4477.78Coatomer subunit zeta-3 OS=Arabidopsis thaliana GN... [more]
COPZ1_ORYSJ4.470e-4374.55Coatomer subunit zeta-1 OS=Oryza sativa subsp. jap... [more]
COPZ2_ORYSJ9.958e-4372.97Coatomer subunit zeta-2 OS=Oryza sativa subsp. jap... [more]
COPZ3_ORYSJ1.590e-4070.00Coatomer subunit zeta-3 OS=Oryza sativa subsp. jap... [more]
COPZ1_BOVIN9.070e-2046.67Coatomer subunit zeta-1 OS=Bos taurus GN=COPZ1 PE=... [more]
COPZ1_PONAB3.446e-1945.71Coatomer subunit zeta-1 OS=Pongo abelii GN=COPZ1 P... [more]
COPZ1_MOUSE3.446e-1945.71Coatomer subunit zeta-1 OS=Mus musculus GN=Copz1 P... [more]
COPZ1_HUMAN3.446e-1945.71Coatomer subunit zeta-1 OS=Homo sapiens GN=COPZ1 P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3BF06FM1 AbsDev Citrus clementina cDNA clone KN0AAI3BF06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873553 ID=FC873553; Name=FC873553; organism=Citrus clementina; type=EST; length=777bp
GGAGTCGCGACTTTCGAAATTAATTGACTGCAGACGACCAGGTTTAATCG
AACGACAAGCATGGATACTTGTCCGTCCATAAAGAATATCCTTCTCCTGG
ATTCTGAAGGGAAACGTGTAGCAGTCAAGTATTATTCAAATGACTGGCCA
ACCAATAGTGCAAAGGAAGCTTTTGAGAAAGCTGTGTTTACCAAGACCCA
GAAAACAAATGCACGGACCGAAGCGGAGATAGCTATGCTTGAGGGCAACG
TTATTGTTTACAAGTTTGTTCAAGACCTTCACTTTTTTGTCACTGGTGGT
GAAGATGAAAATGAGCTGATCTTAGCCACAGTTCTTCAGGGATTTTTTGA
TGCAGTTGGTCTTCTTCTTAGAGGCAATGTGGACAAGAAGGAGGCTCTTG
AGAACTTGGATCTTATCTTGTTGTGCCTTGATGAATTGTTGATGGAGGGT
ATGCAACGTGCTACTCGTTTATATTGTTAATCAACTTTGACTGCTGAACT
TATCCAAAGTTGCCTCTGATCTGATATGATTTGCCGAGATTTAAAACATG
GAAAGATTGCATCCCTTGGATTCCAAGTTTGTAAAAGTCTATTGTGCTGA
AAACATTCAATTGCTTGTAACTAAAAAGCACATACATGGCAAACAACTTG
TGGAGGATCAGTATGAGTTAGGCATTGTTATTTGAAACTGCCTATTGACA
TCTTTATCTTTAGGATTCTTGGGATAATTCAATTGGTCTTGTTAGGTTAT
TATTATATCCTTCCGATCACTAAATCC
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