FC873555
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC873555 vs. ExPASy Swiss-Prot
Match: RD23D_ARATH (Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana GN=RAD23-4 PE=2 SV=2) HSP 1 Score: 191.43 bits (485), Expect = 3.749e-48 Identity = 96/107 (89.72%), Postives = 100/107 (93.46%), Query Frame = 3 Query: 3 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 323 NPQILQPMLQELGKQNP L+RLIQEHQ DFLRLINEPVEG E NV+ QL +AMPQAVTVTPEEREAIERLE MGFDRA+VLEVFFACNKNEELAANYLLDHMHEFED Sbjct: 272 NPQILQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVEGEE-NVMEQLEAAMPQAVTVTPEEREAIERLEGMGFDRAMVLEVFFACNKNEELAANYLLDHMHEFED 377
BLAST of FC873555 vs. ExPASy Swiss-Prot
Match: RD23C_ARATH (Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana GN=RAD23-3 PE=2 SV=2) HSP 1 Score: 185.267 bits (469), Expect = 2.687e-46 Identity = 93/111 (83.78%), Postives = 102/111 (91.89%), Query Frame = 3 Query: 3 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG--EGNVLGQLASAMPQ--AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 323 NPQ+LQPMLQELGKQNP+LMRLIQ+HQ DFLRLINEPVEGG GN+LGQ+A+ MPQ A+ VT EEREAIERLEAMGF+RALVLEVFFACNKNEELAANYLLDHMHEFE+ Sbjct: 309 NPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLINEPVEGGGESGNLLGQMAAGMPQPQAIQVTHEEREAIERLEAMGFERALVLEVFFACNKNEELAANYLLDHMHEFEE 419
BLAST of FC873555 vs. ExPASy Swiss-Prot
Match: RAD23_ORYSJ (Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2) HSP 1 Score: 163.696 bits (413), Expect = 8.371e-40 Identity = 80/108 (74.07%), Postives = 93/108 (86.11%), Query Frame = 3 Query: 3 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG-EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 323 NPQILQP+LQELGKQNP +++LIQE+Q +FL LINEP EG E N+L Q AMPQ + VTPEE EAI RLEAMGFDRALVL+VFFACNK+E+LAANYLLDHM+EF+D Sbjct: 281 NPQILQPLLQELGKQNPQILQLIQENQAEFLHLINEPAEGDDEENLLDQFPEAMPQTIAVTPEENEAILRLEAMGFDRALVLDVFFACNKDEQLAANYLLDHMNEFDD 388
BLAST of FC873555 vs. ExPASy Swiss-Prot
Match: RD23A_ARATH (Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3) HSP 1 Score: 154.066 bits (388), Expect = 6.633e-37 Identity = 75/109 (68.81%), Postives = 91/109 (83.49%), Query Frame = 3 Query: 3 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG--GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 323 NPQILQPMLQELGKQNP L+RLIQE+Q +FL+L+NEP EG GEG++ Q MP A+ VTP E+EAI+RLEAMGFDRALV+E F AC++NEELAANYLL++ +FED Sbjct: 263 NPQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFED 371
BLAST of FC873555 vs. ExPASy Swiss-Prot
Match: RD23B_ARATH (Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana GN=RAD23-2 PE=2 SV=2) HSP 1 Score: 153.295 bits (386), Expect = 1.131e-36 Identity = 74/109 (67.89%), Postives = 91/109 (83.49%), Query Frame = 3 Query: 3 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV--LGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 323 NPQILQPMLQELGKQNP L+RLIQE+Q +FL+L+NEP EG +G+V Q MP +V VTPEE+E+IERLEAMGFDRA+V+E F +C++NEELAANYLL+H +FED Sbjct: 260 NPQILQPMLQELGKQNPQLLRLIQENQAEFLQLLNEPYEGSDGDVDIFDQPDQEMPHSVNVTPEEQESIERLEAMGFDRAIVIEAFLSCDRNEELAANYLLEHSADFED 368
BLAST of FC873555 vs. ExPASy Swiss-Prot
Match: RD23B_HUMAN (UV excision repair protein RAD23 homolog B OS=Homo sapiens GN=RAD23B PE=1 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.290e-21 Identity = 49/108 (45.37%), Postives = 76/108 (70.37%), Query Frame = 3 Query: 3 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE--GGEGNVLGQLASAMPQA-------VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 299 NP +L +LQ++G++NP L++ I +HQ F++++NEPV+ GG+G G + + +A + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL Sbjct: 295 NPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 402
BLAST of FC873555 vs. ExPASy Swiss-Prot
Match: RD23B_BOVIN (UV excision repair protein RAD23 homolog B OS=Bos taurus GN=RAD23B PE=2 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.290e-21 Identity = 49/108 (45.37%), Postives = 76/108 (70.37%), Query Frame = 3 Query: 3 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE--GGEGNVLGQLASAMPQA-------VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 299 NP +L +LQ++G++NP L++ I +HQ F++++NEPV+ GG+G G + + +A + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL Sbjct: 294 NPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGGGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 401
BLAST of FC873555 vs. ExPASy Swiss-Prot
Match: RD23B_RAT (UV excision repair protein RAD23 homolog B OS=Rattus norvegicus GN=Rad23b PE=1 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.991e-21 Identity = 48/114 (42.11%), Postives = 73/114 (64.04%), Query Frame = 3 Query: 3 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE---------------GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 299 NP +L +LQ++G++NP L++ I +HQ F++++NEPV+ GG G + + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL Sbjct: 295 NPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 408
BLAST of FC873555 vs. ExPASy Swiss-Prot
Match: RD23B_MOUSE (UV excision repair protein RAD23 homolog B OS=Mus musculus GN=Rad23b PE=1 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 3.907e-21 Identity = 48/115 (41.74%), Postives = 73/115 (63.48%), Query Frame = 3 Query: 3 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE----------------GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 299 NP +L +LQ++G++NP L++ I +HQ F++++NEPV+ GG G + + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL Sbjct: 295 NPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 409
BLAST of FC873555 vs. ExPASy Swiss-Prot
Match: RD23A_MOUSE (UV excision repair protein RAD23 homolog A OS=Mus musculus GN=Rad23a PE=1 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.137e-20 Identity = 51/114 (44.74%), Postives = 75/114 (65.79%), Query Frame = 3 Query: 3 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 320 NP +L +LQ+LG++NP L++ I HQ F++++NEP + EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL + E Sbjct: 251 NPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE 363 The following BLAST results are available for this feature:
BLAST of FC873555 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 14
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Sequences
The
following sequences are available for this feature:
EST sequence >FC873555 ID=FC873555; Name=FC873555; organism=Citrus clementina; type=EST; length=691bpback to top |