FC873555

Overview
NameFC873555
Unique NameFC873555
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig234 contig Ccv1_Contig234:121..811. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873555 vs. ExPASy Swiss-Prot
Match: RD23D_ARATH (Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana GN=RAD23-4 PE=2 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 3.749e-48
Identity = 96/107 (89.72%), Postives = 100/107 (93.46%), Query Frame = 3
Query:    3 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 323
            NPQILQPMLQELGKQNP L+RLIQEHQ DFLRLINEPVEG E NV+ QL +AMPQAVTVTPEEREAIERLE MGFDRA+VLEVFFACNKNEELAANYLLDHMHEFED
Sbjct:  272 NPQILQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVEGEE-NVMEQLEAAMPQAVTVTPEEREAIERLEGMGFDRAMVLEVFFACNKNEELAANYLLDHMHEFED 377          
BLAST of FC873555 vs. ExPASy Swiss-Prot
Match: RD23C_ARATH (Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana GN=RAD23-3 PE=2 SV=2)

HSP 1 Score: 185.267 bits (469), Expect = 2.687e-46
Identity = 93/111 (83.78%), Postives = 102/111 (91.89%), Query Frame = 3
Query:    3 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG--EGNVLGQLASAMPQ--AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 323
            NPQ+LQPMLQELGKQNP+LMRLIQ+HQ DFLRLINEPVEGG   GN+LGQ+A+ MPQ  A+ VT EEREAIERLEAMGF+RALVLEVFFACNKNEELAANYLLDHMHEFE+
Sbjct:  309 NPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLINEPVEGGGESGNLLGQMAAGMPQPQAIQVTHEEREAIERLEAMGFERALVLEVFFACNKNEELAANYLLDHMHEFEE 419          
BLAST of FC873555 vs. ExPASy Swiss-Prot
Match: RAD23_ORYSJ (Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 8.371e-40
Identity = 80/108 (74.07%), Postives = 93/108 (86.11%), Query Frame = 3
Query:    3 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG-EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 323
            NPQILQP+LQELGKQNP +++LIQE+Q +FL LINEP EG  E N+L Q   AMPQ + VTPEE EAI RLEAMGFDRALVL+VFFACNK+E+LAANYLLDHM+EF+D
Sbjct:  281 NPQILQPLLQELGKQNPQILQLIQENQAEFLHLINEPAEGDDEENLLDQFPEAMPQTIAVTPEENEAILRLEAMGFDRALVLDVFFACNKDEQLAANYLLDHMNEFDD 388          
BLAST of FC873555 vs. ExPASy Swiss-Prot
Match: RD23A_ARATH (Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 6.633e-37
Identity = 75/109 (68.81%), Postives = 91/109 (83.49%), Query Frame = 3
Query:    3 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG--GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 323
            NPQILQPMLQELGKQNP L+RLIQE+Q +FL+L+NEP EG  GEG++  Q    MP A+ VTP E+EAI+RLEAMGFDRALV+E F AC++NEELAANYLL++  +FED
Sbjct:  263 NPQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFED 371          
BLAST of FC873555 vs. ExPASy Swiss-Prot
Match: RD23B_ARATH (Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana GN=RAD23-2 PE=2 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.131e-36
Identity = 74/109 (67.89%), Postives = 91/109 (83.49%), Query Frame = 3
Query:    3 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV--LGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 323
            NPQILQPMLQELGKQNP L+RLIQE+Q +FL+L+NEP EG +G+V    Q    MP +V VTPEE+E+IERLEAMGFDRA+V+E F +C++NEELAANYLL+H  +FED
Sbjct:  260 NPQILQPMLQELGKQNPQLLRLIQENQAEFLQLLNEPYEGSDGDVDIFDQPDQEMPHSVNVTPEEQESIERLEAMGFDRAIVIEAFLSCDRNEELAANYLLEHSADFED 368          
BLAST of FC873555 vs. ExPASy Swiss-Prot
Match: RD23B_HUMAN (UV excision repair protein RAD23 homolog B OS=Homo sapiens GN=RAD23B PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.290e-21
Identity = 49/108 (45.37%), Postives = 76/108 (70.37%), Query Frame = 3
Query:    3 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE--GGEGNVLGQLASAMPQA-------VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 299
            NP +L  +LQ++G++NP L++ I +HQ  F++++NEPV+  GG+G   G  +  + +A       + VTP+E+EAIERL+A+GF   LV++ +FAC KNE LAAN+LL
Sbjct:  295 NPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 402          
BLAST of FC873555 vs. ExPASy Swiss-Prot
Match: RD23B_BOVIN (UV excision repair protein RAD23 homolog B OS=Bos taurus GN=RAD23B PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.290e-21
Identity = 49/108 (45.37%), Postives = 76/108 (70.37%), Query Frame = 3
Query:    3 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE--GGEGNVLGQLASAMPQA-------VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 299
            NP +L  +LQ++G++NP L++ I +HQ  F++++NEPV+  GG+G   G  +  + +A       + VTP+E+EAIERL+A+GF   LV++ +FAC KNE LAAN+LL
Sbjct:  294 NPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGGGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 401          
BLAST of FC873555 vs. ExPASy Swiss-Prot
Match: RD23B_RAT (UV excision repair protein RAD23 homolog B OS=Rattus norvegicus GN=Rad23b PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.991e-21
Identity = 48/114 (42.11%), Postives = 73/114 (64.04%), Query Frame = 3
Query:    3 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE---------------GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 299
            NP +L  +LQ++G++NP L++ I +HQ  F++++NEPV+               GG G  + +  S     + VTP+E+EAIERL+A+GF   LV++ +FAC KNE LAAN+LL
Sbjct:  295 NPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 408          
BLAST of FC873555 vs. ExPASy Swiss-Prot
Match: RD23B_MOUSE (UV excision repair protein RAD23 homolog B OS=Mus musculus GN=Rad23b PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.907e-21
Identity = 48/115 (41.74%), Postives = 73/115 (63.48%), Query Frame = 3
Query:    3 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE----------------GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 299
            NP +L  +LQ++G++NP L++ I +HQ  F++++NEPV+                GG G  + +  S     + VTP+E+EAIERL+A+GF   LV++ +FAC KNE LAAN+LL
Sbjct:  295 NPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 409          
BLAST of FC873555 vs. ExPASy Swiss-Prot
Match: RD23A_MOUSE (UV excision repair protein RAD23 homolog A OS=Mus musculus GN=Rad23a PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.137e-20
Identity = 51/114 (44.74%), Postives = 75/114 (65.79%), Query Frame = 3
Query:    3 NPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 320
            NP +L  +LQ+LG++NP L++ I  HQ  F++++NEP      +   EG V G +    PQ   + VTP+E+EAIERL+A+GF  +LV++ +FAC KNE LAAN+LL    + E
Sbjct:  251 NPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE 363          
The following BLAST results are available for this feature:
BLAST of FC873555 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RD23D_ARATH3.749e-4889.72Putative DNA repair protein RAD23-4 OS=Arabidopsis... [more]
RD23C_ARATH2.687e-4683.78Putative DNA repair protein RAD23-3 OS=Arabidopsis... [more]
RAD23_ORYSJ8.371e-4074.07Probable DNA repair protein RAD23 OS=Oryza sativa ... [more]
RD23A_ARATH6.633e-3768.81Putative DNA repair protein RAD23-1 OS=Arabidopsis... [more]
RD23B_ARATH1.131e-3667.89Putative DNA repair protein RAD23-2 OS=Arabidopsis... [more]
RD23B_HUMAN2.290e-2145.37UV excision repair protein RAD23 homolog B OS=Homo... [more]
RD23B_BOVIN2.290e-2145.37UV excision repair protein RAD23 homolog B OS=Bos ... [more]
RD23B_RAT2.991e-2142.11UV excision repair protein RAD23 homolog B OS=Ratt... [more]
RD23B_MOUSE3.907e-2141.74UV excision repair protein RAD23 homolog B OS=Mus ... [more]
RD23A_MOUSE1.137e-2044.74UV excision repair protein RAD23 homolog A OS=Mus ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3BF10FM1 AbsDev Citrus clementina cDNA clone KN0AAI3BF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873555 ID=FC873555; Name=FC873555; organism=Citrus clementina; type=EST; length=691bp
CAAATCCCCAAATTTTGCAGCCTATGCTTCAGGAACTTGGGAAGCAAAAT
CCACACCTGATGCGACTCATTCAAGAGCATCAGACTGACTTCTTGCGTTT
GATAAATGAGCCCGTTGAAGGAGGAGAGGGGAATGTACTGGGTCAGTTGG
CCTCAGCAATGCCACAGGCTGTGACTGTAACCCCTGAGGAGAGAGAAGCT
ATCGAACGTCTTGAAGCAATGGGCTTTGATCGTGCCCTAGTGTTGGAAGT
GTTCTTTGCTTGCAACAAGAATGAGGAGTTGGCAGCCAACTATCTCTTAG
ATCACATGCATGAGTTTGAGGATTGATTGAAGTCACCCTTTTCTTGTTCT
CCCCCCCTTTTTTTTTTTTCTTTTCCATGTTGGGTGCATATACTCTCTTG
TGGTTAAACAGTGTCTTATACCAACTATATGCTCTGTGGAGTCTGGAGAA
CACTTGTCAGGATGTTCATGTCGCTAGTTTATCCTTGGACGCTAACATTT
TCTCTATTTATTTCTCTTAAGATGTTTGGTTATAAATTATCATACGCCAG
TCTTCATTGGGATATATCTTTTCATTTCTTGCTGCCCTTTCTTTAGTTTA
TCATTTGTAATCGATGTTCGGCTAGTCCCATAAATGTTCTTTATAAAAAT
GTCGCCTCGTTTGCTGTTTTTCAAAAAAAAAAAAAAAAAAA
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