FC873558

Overview
NameFC873558
Unique NameFC873558
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1236 contig Ccv1_Contig1236:3..706. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873558 vs. ExPASy Swiss-Prot
Match: C72A1_CATRO (Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 4.797e-45
Identity = 83/186 (44.62%), Postives = 123/186 (66.13%), Query Frame = 3
Query:  171 EKGPKDLLGLMIQAS--------SNSSSNITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVELGGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVG 704
            E G  DLLG++++++        +     ++  D+IEECK F+FAG++TT  LLTWTT+LL+ HP WQ  AREEVL+  G ++ P  + +  LK +SMIL E LRLYPP+I   +    D +LG Y IP GT++++P + +H +++IWG +A +FNP RF +GVA A K+ V ++PF  G R C+G
Sbjct:  288 EPGEDDLLGVLLESNIQEIQKQGNKKDGGMSINDVIEECKLFYFAGQETTGVLLTWTTILLSKHPEWQERAREEVLQAFG-KNKPEFERLNHLKYVSMILYEVLRLYPPVIDLTKIVHKDTKLGSYTIPAGTQVMLPTVMLHREKSIWGEDAMEFNPMRFVDGVANATKNNVTYLPFSWGPRVCLG 472          

HSP 2 Score: 32.3426 bits (72), Expect = 4.797e-45
Identity = 14/37 (37.84%), Postives = 24/37 (64.86%), Query Frame = 1
Query:    4 VFIPGYRFLPTKRNISSWKLDKQIKRSLTKLIEREKR 114
            V+IPG+ +LPTKRN    +++K+I   L  +I +  +
Sbjct:  246 VYIPGWSYLPTKRNKRMKEINKEITDMLRFIINKRMK 282          
BLAST of FC873558 vs. ExPASy Swiss-Prot
Match: CP341_MOUSE (Cytochrome P450 3A41 OS=Mus musculus GN=Cyp3a41a PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.805e-27
Identity = 71/186 (38.17%), Postives = 106/186 (56.99%), Query Frame = 3
Query:  162 EEQEKGPKDLLGLMIQASSNSSSN-----ITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVELGGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVG 704
            + ++K   D L LM+ A +NS        ++D +I  +   F FAG +TTS+ L++T   LA HP  Q   +EE+     ++  PT D V +++ L M+LNE+LRLYP      R  K DVEL G  IP+G+ ++IP  A+HHD   W  E  +F P RFS+   + +  P  ++PFG+G R C+G
Sbjct:  262 DSKQKHRVDFLQLMMNAHNNSKDKDSHKALSDMEITAQSIVFIFAGYETTSSTLSFTLYCLATHPDIQKKLQEEIDETLPNKAPPTYDTVMEMEYLDMVLNETLRLYPIGNRLERFCKKDVELNGVYIPKGSTVMIPSYALHHDPQHW-PEPEEFQPERFSK-ENKGSIDPYLYMPFGIGPRNCIG 445          
BLAST of FC873558 vs. ExPASy Swiss-Prot
Match: CP3AB_MOUSE (Cytochrome P450 3A11 OS=Mus musculus GN=Cyp3a11 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.446e-26
Identity = 70/186 (37.63%), Postives = 106/186 (56.99%), Query Frame = 3
Query:  162 EEQEKGPKDLLGLMIQASSNSSSNIT-----DYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVELGGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVG 704
            + ++K   D L LM+ + +NS   ++     D +I  +   F FAG +TTS+ L++T   LA HP  Q   ++E+     ++  PT D V +++ L M+LNE+LRLYP      R  K DVEL G  IP+G+ ++IP  A+HHD   W SE  +F P RFS+   + +  P  ++PFG G R C+G
Sbjct:  262 DSKQKHRVDFLQLMMNSHNNSKDKVSHKALSDMEITAQSIIFIFAGYETTSSTLSFTLHSLATHPDIQKKLQDEIDEALPNKAPPTYDTVMEMEYLDMVLNETLRLYPIANRLERVCKKDVELNGVYIPKGSTVMIPSYALHHDPQHW-SEPEEFQPERFSK-ENKGSIDPYVYLPFGNGPRNCLG 445          
BLAST of FC873558 vs. ExPASy Swiss-Prot
Match: CP3AO_SHEEP (Cytochrome P450 3A24 OS=Ovis aries GN=CYP3A24 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.889e-26
Identity = 63/185 (34.05%), Postives = 109/185 (58.92%), Query Frame = 3
Query:  162 EEQEKGPKDLLGLMIQASSNSSSN----ITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVELGGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVG 704
            ++ +K   D L LMI + ++  ++    ++D +++ +   F FAG +TTSN L++   +LA HP  Q   +EE+     ++  PT D +A+++ L M++NE+LR++P  +   R  K DVE+ G  IP+GT + +PI  +H D  +W  E  +F P RFS+   + + +P  ++PFG G R C+G
Sbjct:  262 KDNQKPRVDFLQLMINSQNSKETDNHKALSDQELMAQSVIFIFAGYETTSNTLSFLLYILATHPDVQQKLQEEIDATFPNKAPPTYDVLAQMEYLDMVVNETLRMFPIAVRLDRLCKKDVEIHGVSIPKGTAVTVPIFVLHRDPQLW-PEPEEFRPERFSK-KNKDSINPYVYLPFGTGPRNCIG 444          
BLAST of FC873558 vs. ExPASy Swiss-Prot
Match: CP3A5_HUMAN (Cytochrome P450 3A5 OS=Homo sapiens GN=CYP3A5 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.467e-26
Identity = 71/212 (33.49%), Postives = 116/212 (54.72%), Query Frame = 3
Query:   81 ITNEVDRERKANGNSKNKTMMATAMPQEEQEKGPKDLLGLMIQASSNSSSN----ITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVELGGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVG 704
            ++  V+R +K+  N K K  +              D L LMI + ++  +     ++D ++  +   F FAG +TTS++L++T   LA HP  Q   ++E+  V  ++  PT D V +++ L M++NE+LRL+P  I   R  K DVE+ G  IP+G+ ++IP  A+HHD   W +E  +F P RFS+   + +  P  + PFG G R C+G
Sbjct:  249 LSKSVNRMKKSRLNDKQKHRL--------------DFLQLMIDSQNSKETESHKALSDLELAAQSIIFIFAGYETTSSVLSFTLYELATHPDVQQKLQKEIDAVLPNKAPPTYDAVVQMEYLDMVVNETLRLFPVAIRLERTCKKDVEINGVFIPKGSMVVIPTYALHHDPKYW-TEPEEFRPERFSK--KKDSIDPYIYTPFGTGPRNCIG 443          
BLAST of FC873558 vs. ExPASy Swiss-Prot
Match: CP3AC_CANFA (Cytochrome P450 3A12 OS=Canis familiaris GN=CYP3A12 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.207e-26
Identity = 65/185 (35.14%), Postives = 107/185 (57.84%), Query Frame = 3
Query:  162 EEQEKGPKDLLGLMIQASSNSSSN----ITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVELGGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVG 704
            ++++K   D L LMI + ++   +    ++D +++ +   F FAG +TTS  L++    LA HP  Q   +EE+     ++ LPT D + +++ L M+LNE+LRLYP      R  K DVE+ G  IP+GT +++P   +H DQ++W  E  +F P RFS    + + +P  ++PFG G R C+G
Sbjct:  262 KDKQKHRVDFLQLMINSQNSKEMDTHKALSDLELVAQSIIFIFAGYETTSTSLSFLMYELATHPDVQQKLQEEIDATFPNKALPTYDALVQMEYLDMVLNETLRLYPIAGRLERVCKKDVEISGVFIPKGTVVMVPTFTLHRDQSLW-PEPEEFRPERFSR-KNKDSINPYTYLPFGTGPRNCIG 444          
BLAST of FC873558 vs. ExPASy Swiss-Prot
Match: CP3A2_RAT (Cytochrome P450 3A2 OS=Rattus norvegicus GN=Cyp3a2 PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 7.177e-26
Identity = 70/186 (37.63%), Postives = 104/186 (55.91%), Query Frame = 3
Query:  162 EEQEKGPKDLLGLMIQASSNSSSNIT-----DYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVELGGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVG 704
            + + K   D L LM+ A +NS   ++     D +II +   F FAG +TTS+ L++    LA HP  Q   +EE+     S+  PT D V +++ L M+LNE+LRLYP      R  K D+EL G  IP+G+ + IP  A+HHD   W  +  +F+P RFS+   + +  P  ++PFG G R C+G
Sbjct:  262 DSKHKHRVDFLQLMLNAHNNSKDEVSHKALSDVEIIAQSVIFIFAGYETTSSTLSFVLYFLATHPDIQKKLQEEIDGALPSKAPPTYDIVMEMEYLDMVLNETLRLYPIGNRLERVCKKDIELDGLFIPKGSVVTIPTYALHHDPQHW-PKPEEFHPERFSK-ENKGSIDPYVYLPFGNGPRNCIG 445          
BLAST of FC873558 vs. ExPASy Swiss-Prot
Match: CP3AV_MESAU (Cytochrome P450 3A31 OS=Mesocricetus auratus GN=CYP3A31 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.727e-25
Identity = 67/181 (37.02%), Postives = 103/181 (56.91%), Query Frame = 3
Query:  171 EKGPKDLLGLMIQASSNSSSN---ITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVELGGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVG 704
            +K   D L LM+ +  NS  +   ++D +II +   F FAG  TTS+ L++   LLA HP  Q   +EE+     ++  P+ D V +++ L M+LNE+LRLYP      R  K DVE+ G  +P+G+ +++P+ A+H+D   W  E   F P RFS+   + +  P  F+PFG G R C+G
Sbjct:  264 QKHRVDFLQLMMNSHDNSKDSHKALSDMEIIAQSIIFIFAGYDTTSSTLSFALYLLATHPDVQKKLQEEIDIALPNKARPSYDKVMEMEYLDMVLNETLRLYPIGSRLERVCKQDVEMDGVFVPKGSIVMVPVFALHYDPQYW-PEPEKFRPERFSK-ENKGSIDPYIFLPFGNGPRNCIG 442          
BLAST of FC873558 vs. ExPASy Swiss-Prot
Match: CP3AD_MOUSE (Cytochrome P450 3A13 OS=Mus musculus GN=Cyp3a13 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.727e-25
Identity = 67/185 (36.22%), Postives = 106/185 (57.30%), Query Frame = 3
Query:  162 EEQEKGPKDLLGLMIQASS----NSSSNITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVELGGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVG 704
            +E+EK   D L LMI + +     S   ++D +I+ +   F FAG +TTS+ L++   LLA+HP  Q   ++E+     ++   T D + +++ L M++NE+LRLYP      R  K DVE+ G  IP+GT ++IP  A+H D   W  E  +F P RFS+   + + +P  ++PFG G R C+G
Sbjct:  262 KEKEKQRVDFLQLMINSQNYKTKESHKALSDVEIVAQSVIFIFAGYETTSSALSFALYLLAIHPDVQKKLQDEIDAALPNKAPATYDTLLQMEYLDMVVNETLRLYPIAGRLERVCKTDVEINGLFIPKGTVVMIPTFALHKDPKYW-PEPEEFRPERFSK-KNQDSINPYMYLPFGSGPRNCIG 444          
BLAST of FC873558 vs. ExPASy Swiss-Prot
Match: CP3AG_MOUSE (Cytochrome P450 3A16 OS=Mus musculus GN=Cyp3a16 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.562e-25
Identity = 66/186 (35.48%), Postives = 104/186 (55.91%), Query Frame = 3
Query:  162 EEQEKGPKDLLGLMIQASSNSSSN-----ITDYDIIEECKSFFFAGKQTTSNLLTWTTVLLAMHPHWQVLAREEVLRVCGSRDLPTRDDVAKLKTLSMILNESLRLYPPIIATIRRAKADVELGGYKIPRGTELLIPILAVHHDQAIWGSEANDFNPARFSEGVARAAKHPVGFIPFGLGVRTCVG 704
            + ++K   D + LM++A + S        +++ +I  +   F FAG +TTS++L++T   LA HP  Q   +EE+     ++  PT D V  ++ L M+LNE+LRLYP      R  K DVE+ G  IP+G+ ++IP   +HHD   W  E  +F P RFS+   + +  P  ++PFG G R C+G
Sbjct:  262 DSKQKHRVDFIYLMMEAYNKSKDKDSHKALSEIEITAQSIIFIFAGYETTSSILSFTVYSLATHPDIQKKLQEEIDEALPNKAPPTYDTVMAMEYLDMVLNETLRLYPITNRLQRVCKKDVEINGIYIPKGSTVIIPSYVLHHDPQHW-PEPEEFQPERFSK-ENKGSIDPYVYLPFGNGPRNCIG 445          
The following BLAST results are available for this feature:
BLAST of FC873558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 466
Match NameE-valueIdentityDescription
C72A1_CATRO4.797e-4544.62Secologanin synthase OS=Catharanthus roseus GN=CYP... [more]
CP341_MOUSE3.805e-2738.17Cytochrome P450 3A41 OS=Mus musculus GN=Cyp3a41a P... [more]
CP3AB_MOUSE1.446e-2637.63Cytochrome P450 3A11 OS=Mus musculus GN=Cyp3a11 PE... [more]
CP3AO_SHEEP1.889e-2634.05Cytochrome P450 3A24 OS=Ovis aries GN=CYP3A24 PE=2... [more]
CP3A5_HUMAN2.467e-2633.49Cytochrome P450 3A5 OS=Homo sapiens GN=CYP3A5 PE=1... [more]
CP3AC_CANFA4.207e-2635.14Cytochrome P450 3A12 OS=Canis familiaris GN=CYP3A1... [more]
CP3A2_RAT7.177e-2637.63Cytochrome P450 3A2 OS=Rattus norvegicus GN=Cyp3a2... [more]
CP3AV_MESAU2.727e-2537.02Cytochrome P450 3A31 OS=Mesocricetus auratus GN=CY... [more]
CP3AD_MOUSE2.727e-2536.22Cytochrome P450 3A13 OS=Mus musculus GN=Cyp3a13 PE... [more]
CP3AG_MOUSE3.562e-2535.48Cytochrome P450 3A16 OS=Mus musculus GN=Cyp3a16 PE... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3BG01FM1 AbsDev Citrus clementina cDNA clone KN0AAI3BG01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873558 ID=FC873558; Name=FC873558; organism=Citrus clementina; type=EST; length=704bp
AAAGTCTTCATCCCTGGCTACAGATTTTTGCCGACAAAAAGGAACATAAG
CTCATGGAAACTTGACAAGCAGATCAAGAGATCACTAACGAAGTTGATCG
AGAGAGAAAAGCGAATGGGAATAGCAAGAATAAGACGATGATGGCGACGG
CGATGCCGCAGGAGGAACAAGAAAAGGGACCAAAAGATTTGTTAGGGCTA
ATGATTCAAGCATCATCGAATTCCTCCTCCAACATAACAGATTATGACAT
AATTGAAGAGTGCAAGAGCTTCTTCTTTGCTGGCAAACAGACCACATCCA
ATCTGCTGACGTGGACAACCGTCCTTCTAGCTATGCACCCACACTGGCAG
GTGCTAGCACGTGAGGAGGTTCTAAGGGTGTGTGGATCACGTGACTTACC
CACCAGAGATGATGTTGCAAAGCTTAAGACCCTAAGCATGATACTAAATG
AATCCCTTCGATTGTATCCGCCAATAATCGCGACAATCAGACGGGCCAAG
GCCGACGTGGAGTTGGGTGGATACAAGATACCGCGTGGGACCGAGTTGCT
GATACCAATCCTGGCCGTTCATCACGACCAAGCAATTTGGGGGAGTGAGG
CAAACGATTTCAATCCAGCTAGATTCTCAGAGGGAGTGGCCCGGGCAGCG
AAGCATCCCGTGGGGTTCATACCATTCGGCCTTGGGGTCCGCACCTGCGT
TGGG
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