FC873559

Overview
NameFC873559
Unique NameFC873559
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length505
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9589 contig Ccv1_Contig9589:196..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC873559 vs. ExPASy Swiss-Prot
Match: RL40_NICSY (60S ribosomal protein L40 OS=Nicotiana sylvestris GN=UBICEP52-7 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.501e-24
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 3 
Query:   66 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 221
            IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCR+KKCGHSNQLRPKKKIK
Sbjct:    1 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRRKKCGHSNQLRPKKKIK 52
[Close]
BLAST of FC873559 vs. ExPASy Swiss-Prot
Match: RL40_ORYSJ (60S ribosomal protein L40 OS=Oryza sativa subsp. japonica GN=Ub-CEP52-1 PE=3 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 2.560e-24
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = 3 
Query:   66 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 221
            IIEPSL ALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK
Sbjct:    1 IIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 52
[Close]
BLAST of FC873559 vs. ExPASy Swiss-Prot
Match: RL40_ARATH (60S ribosomal protein L40 OS=Arabidopsis thaliana GN=UBQ1 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.560e-24
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = 3 
Query:   66 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 221
            IIEPSLM LARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK
Sbjct:    1 IIEPSLMMLARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 52
[Close]
BLAST of FC873559 vs. ExPASy Swiss-Prot
Match: RL40_BRARA (60S ribosomal protein L40 OS=Brassica rapa PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 5.704e-24
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = 3 
Query:   66 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 221
            IIEPSLMALARKYNQ KMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK
Sbjct:    1 IIEPSLMALARKYNQAKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 52
[Close]
BLAST of FC873559 vs. ExPASy Swiss-Prot
Match: RL40_CHLRE (60S ribosomal protein L40 OS=Chlamydomonas reinhardtii GN=UBI1 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 5.338e-22
Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = 3 
Query:   66 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 221
            IIEPSL ALARKYNQ+KMICRKCYARLHPRA NCRKK CGH+NQLRPKKK+K
Sbjct:    1 IIEPSLQALARKYNQEKMICRKCYARLHPRAKNCRKKSCGHTNQLRPKKKLK 52
[Close]
BLAST of FC873559 vs. ExPASy Swiss-Prot
Match: RL40_SHEEP (60S ribosomal protein L40 OS=Ovis aries GN=UBA52 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.460e-21
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 3 
Query:   66 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 221
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of FC873559 vs. ExPASy Swiss-Prot
Match: RL40_RAT (60S ribosomal protein L40 OS=Rattus norvegicus GN=Uba52 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.460e-21
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 3 
Query:   66 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 221
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of FC873559 vs. ExPASy Swiss-Prot
Match: RL40_PONAB (60S ribosomal protein L40 OS=Pongo abelii GN=UBA52 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.460e-21
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 3 
Query:   66 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 221
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of FC873559 vs. ExPASy Swiss-Prot
Match: RL40_PIG (60S ribosomal protein L40 OS=Sus scrofa GN=UBA52 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.460e-21
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 3 
Query:   66 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 221
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
[Close]
BLAST of FC873559 vs. ExPASy Swiss-Prot
Match: RL40_OPHHA (60S ribosomal protein L40 OS=Ophiophagus hannah PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.460e-21
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 3 
Query:   66 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 221
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52
The following BLAST results are available for this feature:
BLAST of FC873559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
RL40_NICSY1.501e-2498.0860S ribosomal protein L40 OS=Nicotiana sylvestris ... [more]
RL40_ORYSJ2.560e-2498.0860S ribosomal protein L40 OS=Oryza sativa subsp. j... [more]
RL40_ARATH2.560e-2498.0860S ribosomal protein L40 OS=Arabidopsis thaliana ... [more]
RL40_BRARA5.704e-2498.0860S ribosomal protein L40 OS=Brassica rapa PE=3 SV... [more]
RL40_CHLRE5.338e-2288.4660S ribosomal protein L40 OS=Chlamydomonas reinhar... [more]
RL40_SHEEP3.460e-2186.5460S ribosomal protein L40 OS=Ovis aries GN=UBA52 P... [more]
RL40_RAT3.460e-2186.5460S ribosomal protein L40 OS=Rattus norvegicus GN=... [more]
RL40_PONAB3.460e-2186.5460S ribosomal protein L40 OS=Pongo abelii GN=UBA52... [more]
RL40_PIG3.460e-2186.5460S ribosomal protein L40 OS=Sus scrofa GN=UBA52 P... [more]
RL40_OPHHA3.460e-2186.5460S ribosomal protein L40 OS=Ophiophagus hannah PE... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3BG02FM1 AbsDev Citrus clementina cDNA clone KN0AAI3BG02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873559 ID=FC873559; Name=FC873559; organism=Citrus clementina; type=EST; length=505bp
CCTTGGCTGATTATTATATTCAGAAAGAATCCACTCTTCATTTGGTGCTG
AGGCTTAGGGGAGGTATCATTGAGCCTTCATTGATGGCTTTGGCTCGCAA
ATACAATCAGGATAAGATGATTTGCCGCAAATGTTATGCTCGTCTGCATC
CCAGGGCTGTAAATTGCCGGAAGAAGAAATGTGGCCACAGCAATCAGTTG
AGGCCTAAGAAGAAGATCAAGTAGACCACTTGCCTTAGTCATGATATGTG
CCTTCAGAGAGACATTCCAATTATGAGATGTATTTTGTTTGTTTTTTAAT
AGGATTTGGGATTTGAATTAAGCGATCATCTAAGTTGGATTGTAGTTGAT
TCAGTTCAAGTGCAATTCTGTTAAACTTTTACCGTATGAAATTGGGATAT
ATTTTTTAGCTAATTTTGTTTCATTGTCGGTGTAATTTTTGGGACGGATT
TATATCAAATTGGGATACATAATCTGCATGTATTACAAAAAAAAAAAAAA
AAAAA
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