FC873565

Overview
NameFC873565
Unique NameFC873565
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length535
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig415 contig Ccv1_Contig415:46..580. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873565 vs. ExPASy Swiss-Prot
Match: NDUA2_BOVIN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Bos taurus GN=NDUFA2 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.027e-16
Identity = 41/89 (46.07%), Postives = 59/89 (66.29%), Query Frame = 1
Query:   16 RGQLSRSMKELRILLCQXXXXXXXXXXFVERNYKELKTLNPKLPILIRECSGIEPQLWARYDMGVEKGIGLDGLNEAQITKALEDLVKA 282
            RG+L   ++E+RI LCQ          F+E+ Y ELK  NP LPILIRECS ++P+LWARY  G EK + L+  +  Q+T+ALE+++ +
Sbjct:   11 RGKLG--LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQEKNVSLNNFSADQVTRALENVLSS 97          
BLAST of FC873565 vs. ExPASy Swiss-Prot
Match: NDUA2_PONPY (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Pongo pygmaeus GN=NDUFA2 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.342e-16
Identity = 39/81 (48.15%), Postives = 55/81 (67.90%), Query Frame = 1
Query:   37 MKELRILLCQXXXXXXXXXXFVERNYKELKTLNPKLPILIRECSGIEPQLWARYDMGVEKGIGLDGLNEAQITKALEDLVK 279
            ++E+RI LCQ          F+E+ Y ELK  NP LPILIRECS ++P+LWARY  G EK + L+  +  Q+T+ALE+++K
Sbjct:   16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQEKNVPLNNFSADQVTRALENVLK 96          
BLAST of FC873565 vs. ExPASy Swiss-Prot
Match: NDUA2_PONAB (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Pongo abelii GN=NDUFA2 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.342e-16
Identity = 39/81 (48.15%), Postives = 55/81 (67.90%), Query Frame = 1
Query:   37 MKELRILLCQXXXXXXXXXXFVERNYKELKTLNPKLPILIRECSGIEPQLWARYDMGVEKGIGLDGLNEAQITKALEDLVK 279
            ++E+RI LCQ          F+E+ Y ELK  NP LPILIRECS ++P+LWARY  G EK + L+  +  Q+T+ALE+++K
Sbjct:   16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQEKNVPLNNFSADQVTRALENVLK 96          
BLAST of FC873565 vs. ExPASy Swiss-Prot
Match: NDUA2_MACFA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Macaca fascicularis GN=NDUFA2 PE=3 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 5.098e-16
Identity = 38/80 (47.50%), Postives = 54/80 (67.50%), Query Frame = 1
Query:   37 MKELRILLCQXXXXXXXXXXFVERNYKELKTLNPKLPILIRECSGIEPQLWARYDMGVEKGIGLDGLNEAQITKALEDLV 276
            ++E+RI LCQ          F+E+ Y ELK  NP LPILIRECS ++P+LWARY  G EK + L+  +  Q+T+ALE+++
Sbjct:   16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQEKNVPLNNFSADQVTRALENVL 95          
BLAST of FC873565 vs. ExPASy Swiss-Prot
Match: NDUA2_HUMAN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Homo sapiens GN=NDUFA2 PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 2.530e-15
Identity = 37/80 (46.25%), Postives = 53/80 (66.25%), Query Frame = 1
Query:   37 MKELRILLCQXXXXXXXXXXFVERNYKELKTLNPKLPILIRECSGIEPQLWARYDMGVEKGIGLDGLNEAQITKALEDLV 276
            ++E+RI LCQ          F+E+ Y ELK  NP LPILIRECS ++P+LWARY  G E  + L+  +  Q+T+ALE+++
Sbjct:   16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQETNVPLNNFSADQVTRALENVL 95          
BLAST of FC873565 vs. ExPASy Swiss-Prot
Match: NDUA2_GORGO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Gorilla gorilla gorilla GN=NDUFA2 PE=3 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 2.142e-14
Identity = 36/80 (45.00%), Postives = 52/80 (65.00%), Query Frame = 1
Query:   37 MKELRILLCQXXXXXXXXXXFVERNYKELKTLNPKLPILIRECSGIEPQLWARYDMGVEKGIGLDGLNEAQITKALEDLV 276
            ++E+RI LCQ          F+E+ Y ELK  N  LPILIRECS ++P+LWARY  G E  + L+  +  Q+T+ALE+++
Sbjct:   16 LREIRIHLCQRSPGSRGVRDFIEKRYVELKKANSDLPILIRECSDVQPKLWARYAFGQETNVPLNNFSADQVTRALENVL 95          
BLAST of FC873565 vs. ExPASy Swiss-Prot
Match: NDUA2_MOUSE (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Mus musculus GN=Ndufa2 PE=1 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 6.232e-14
Identity = 33/80 (41.25%), Postives = 54/80 (67.50%), Query Frame = 1
Query:   37 MKELRILLCQXXXXXXXXXXFVERNYKELKTLNPKLPILIRECSGIEPQLWARYDMGVEKGIGLDGLNEAQITKALEDLV 276
            ++E+R+ LCQ          F+ + Y ELK  +P LPILIRECS ++P+LWARY  G EK + L+ L+  ++T+A+++++
Sbjct:   16 LREIRVHLCQRSPGSQGVRDFIVQRYVELKKAHPNLPILIRECSEVQPKLWARYAFGQEKTVSLNNLSADEVTRAMQNVL 95          
BLAST of FC873565 vs. ExPASy Swiss-Prot
Match: NDUA2_NEUCR (NADH-ubiquinone oxidoreductase 10.5 kDa subunit OS=Neurospora crassa GN=nuo-10.5 PE=4 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.535e-12
Identity = 36/91 (39.56%), Postives = 54/91 (59.34%), Query Frame = 1
Query:    7 MAWRGQLSRSMKELRILLCQXXXXXXXXXXFVERNYKELKTLNPKLPILIRECSGIEPQLWARYDMGVEKGIGLDGLNEAQITKALEDLVK 279
            M+ R   ++ +KE+R L CQ          F+ RNY  +K  NP  PILIR+ SG  P+++AR++ G EK   L+GL++ QI + +  LVK
Sbjct:    1 MSGRFAFNKGLKEVRFLFCQTGEHSAATRSFLLRNYPAMKKDNPATPILIRDASGTLPKVYARFEFGKEKSQSLEGLSDQQIEETVSSLVK 91          
The following BLAST results are available for this feature:
BLAST of FC873565 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
NDUA2_BOVIN1.027e-1646.07NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA2_PONPY1.342e-1648.15NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA2_PONAB1.342e-1648.15NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA2_MACFA5.098e-1647.50NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA2_HUMAN2.530e-1546.25NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA2_GORGO2.142e-1445.00NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA2_MOUSE6.232e-1441.25NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA2_NEUCR1.535e-1239.56NADH-ubiquinone oxidoreductase 10.5 kDa subunit OS... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI3BG08FM1 AbsDev Citrus clementina cDNA clone KN0AAI3BG08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873565 ID=FC873565; Name=FC873565; organism=Citrus clementina; type=EST; length=535bp
AGAGAGATGGCATGGAGAGGACAATTATCTCGGAGCATGAAGGAACTGAG
GATCTTACTCTGCCAGACTTCTCCTTCAAGCTCCTCCACTAGATCCTTTG
TAGAGAGGAACTACAAGGAGTTGAAGACTTTAAACCCCAAACTTCCTATC
TTGATTCGTGAGTGCAGTGGGATTGAGCCCCAGTTATGGGCTAGATATGA
TATGGGTGTTGAGAAGGGCATTGGTTTGGATGGTCTGAATGAGGCACAGA
TCACAAAGGCACTCGAAGACCTTGTCAAAGCTGGGGAAGCCCTTAAGCGT
TGATATTGCTACTCTTTGATCCATATGAGATGAAATAAATGTGTTAGAAA
AATCTTGATATGACCAGTTTGCTCTTTTGTTTAGCAATCATTTTGATGTA
CTTTGCATGGTTGTCCAATATCTTGATTATTGTCTGCATTAGCATATTAT
ACTCTCATCCATATCTTTCAGCTCAATTAGTGCTAATGTAATACCAAAAT
AACACTGATCAGGGATTATCTTTGAGATTAAGACT
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