FC873566

Overview
NameFC873566
Unique NameFC873566
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length845
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1237 contig Ccv1_Contig1237:1..845. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873566 vs. ExPASy Swiss-Prot
Match: TT12_ARATH (Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 5.100e-43
Identity = 96/281 (34.16%), Postives = 146/281 (51.96%), Query Frame = 3
Query:    6 KLLGEQTDIANRAGDISLWFIGILYFFVFSLTIQKYLQAQLKNMIVGWLSAVAFAVHVALSWIFVSKLNLGIPGAMSAMIIASWFIVIGQFVY-LFGGWCPNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNALLVLLAGYMKNATIEISSFSICLNIISWEFMLVFGFLAASGVRVSNELGRGDAKAAKFSVKVAIATTTVIGFFFSLICLVFSRKLAHLFTSNDEVIEXXXXXXXXXXXXXXXNGFQAVLSXXXXXXXXXXXXXYINIICYYFIG 845
            K +G+   IA+     +   I  +Y F  +  +Q++LQAQ     + ++S   F +H  L+W+  + L+ G+ GA   +  + W +V    +Y L    C  TW GFS+ AF  ++P  KL+++S VM+CLE WYN  LV+++G + N TI + + SIC+  ++W+   + G  AA  VRVSNELG G+ + A  SV V   TT +I     +I LVF   L+  FTS+ EVI                NG Q +LS             Y+N++ YY IG
Sbjct:  159 KTMGQSVAIAHEGQIFARGMIPQIYAFALACPMQRFLQAQNIVNPLAYMSLGVFLLHTLLTWLVTNVLDFGLLGAALILSFSWWLLVAVNGMYILMSPNCKETWTGFSTRAFRGIWPYFKLTVASAVMLCLEIWYNQGLVIISGLLSNPTISLDAISICMYYLNWDMQFMLGLSAAISVRVSNELGAGNPRVAMLSVVVVNITTVLISSVLCVIVLVFRVGLSKAFTSDAEVIAAVSDLFPLLAVSIFLNGIQPILSGVAIGSGWQAVVAYVNLVTYYVIG 439          
BLAST of FC873566 vs. ExPASy Swiss-Prot
Match: YJ2D_SCHPO (Uncharacterized transporter C4B3.13 OS=Schizosaccharomyces pombe GN=SPCC4B3.13 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.136e-19
Identity = 61/250 (24.40%), Postives = 110/250 (44.00%), Query Frame = 3
Query:  102 IQKYLQAQLKNMIVGWLSAVAFAVHVALSWIFVSK--LNLGIPGAMSAMIIASWFIVIGQFVYLFGGWCPNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNALLVLLAGYMKNATIEISSFSICLNIISWEFMLVFGFLAASGVRVSNELGRGDAKAAKFSVKVAIATTTVIGFFFSLICLVFSRKLAHLFTSNDEVIEXXXXXXXXXXXXXXXNGFQAVLSXXXXXXXXXXXXXYINIICYYFIG 845
            ++++LQ Q     V ++ A+   +++ L+++FV    +  G  GA  A+ +  W       +Y+        W GFS  A  +  P+ +L++   +MIC E+W   L+   +G +   T E++S S+     +  + L FG  AA+  RV N +G G+ K AK +  V+I     IG   ++I  +      ++FTS+ +V+                +  Q V                +N I YY +G
Sbjct:  236 LKRFLQVQGIFHPVTYILAIVVPINIFLNYLFVWSPWVGFGFLGAPVAVALTLWSACAVLIIYIMKVNGRQAWGGFSREALKNWGPLCRLAVPGVIMICSEYWAFELVTFASGVL--GTTELASMSVLSTTSTLSYNLAFGVAAAAATRVGNLIGAGNTKLAKLATHVSINLGAAIGVIIAVILFLTRNTWTYIFTSDKDVVALVATIIPLVALINIADNTQCVAGGLLRGQGRQRIGGVVNFIAYYLLG 483          
BLAST of FC873566 vs. ExPASy Swiss-Prot
Match: S47A1_HUMAN (Multidrug and toxin extrusion protein 1 OS=Homo sapiens GN=SLC47A1 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.818e-17
Identity = 60/210 (28.57%), Postives = 112/210 (53.33%), Query Frame = 3
Query:   84 FVFSLTIQKYLQAQ---LKNMIVGWLSAVAFAVHVALSWIFVSKLNLGIPGAMSAMIIASWFIVIGQFVYLFGGWCPN-TWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNALLVLLAGYMKNATIEISSFSICLNIISWEFMLVFGFLAASGVRVSNELGRGDAKAAKFSVKVAIATTTVIGFFFSLICLVFSRKLAHLFTSNDEVI 701
            F++ L + KYL  Q   L  ++ G     A  V+   +++F+ +L+LG+ G+  A +I+ + + +  F+Y+ G      TW G+S     D    L+L+I S +M+C+E+W   +   L+G +    +E+ + SI   +    +M+  GF  A+ VRV N LG GD + A+ S  V++  T +    FS++ L     + ++FT++ ++I
Sbjct:  169 FLYMLQV-KYLLNQGIVLPQIVTG---VAANLVNALANYLFLHQLHLGVIGSALANLISQYTLALLLFLYILGKKLHQATWGGWSLECLQDWASFLRLAIPSMLMLCMEWWAYEVGSFLSGIL--GMVELGAQSIVYELAIIVYMVPAGFSVAASVRVGNALGAGDMEQARKSSTVSLLITVLFAVAFSVLLLSCKDHVGYIFTTDRDII 372          
BLAST of FC873566 vs. ExPASy Swiss-Prot
Match: S47A1_DANRE (Multidrug and toxin extrusion protein 1 OS=Danio rerio GN=slc47a1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.681e-17
Identity = 55/245 (22.45%), Postives = 112/245 (45.71%), Query Frame = 3
Query:  126 LKNMIVGWLSAVAFA----VHVALSWIFVSKLNLGIPGAMSAMIIASWFIVIGQFVYL-FGGWCPNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNALLVLLAGYMKNATIEISSFSICLNIISWEFMLVFGFLAASGVRVSNELGRGDAKAAKFSVKVAIATTTVIGFFFSLICLVFSRKLAHLFTSNDEVIEXXXXXXXXXXXXXXXNGFQAVLSXXXXXXXXXXXXXYINIICYYFIG 845
            L+N  + W   +  A    ++  ++++F+  L LG+ G+ +A  I+ + + +  +VY+ +      TW G+S     +    ++L++ S +M+C+E+W   +   LAG +     E+ + S+   + +  +M   GF  A+ VRV N LG G+ + AK S KVA+    ++    + +       +A++FT+ +E++                +    +                 NI+ YYF+G
Sbjct:  196 LQNQGIIWPQVITGAAGNILNALINYVFLHLLELGVAGSAAANTISQYSLAVFLYVYIRWKNLHKATWDGWSRDCLQEWGAFIRLALPSMLMLCVEWWTYEIGGFLAGLISET--ELGAQSVVYELATIAYMFPLGFAVAASVRVGNALGAGNTERAKLSAKVALVCGVLVSCVVATLIGCTKDVIAYIFTTEEEIVSRVSQVMIMYGFFHLFDAIAGITGGIVRGAGKQLLGALCNIVGYYFVG 438          
BLAST of FC873566 vs. ExPASy Swiss-Prot
Match: S47A1_PONAB (Multidrug and toxin extrusion protein 1 OS=Pongo abelii GN=SLC47A1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.069e-16
Identity = 59/210 (28.10%), Postives = 109/210 (51.90%), Query Frame = 3
Query:   84 FVFSLTIQKYLQAQ---LKNMIVGWLSAVAFAVHVALSWIFVSKLNLGIPGAMSAMIIASWFIVIGQFVYLFGGWCPN-TWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNALLVLLAGYMKNATIEISSFSICLNIISWEFMLVFGFLAASGVRVSNELGRGDAKAAKFSVKVAIATTTVIGFFFSLICLVFSRKLAHLFTSNDEVI 701
            F++ L + KYL  Q   L  ++ G     A  V+   +++F+ +L+LG  G+  A +I+ + + +  F Y+ G      TW G+S     D    L L++ S +M+C+E+W   +   L+G +    +E+ + SI   +    +M+  GF  A+ VRV N LG GD + A+ S  V++  T +    FS++ L     + ++FT++ ++I
Sbjct:  169 FLYMLQV-KYLLNQGIVLPQIVTG---VAANLVNALANYLFLHQLHLGAIGSALANLISQYTLALLLFFYILGKKLHQATWGGWSLECLQDWASFLHLAVPSMLMLCMEWWAYEVGSFLSGIL--GMVELGAQSIVYELAIIVYMVPAGFSVAASVRVGNALGAGDMEQARKSSTVSLLITVLFAVAFSVLLLSCKDHVGYIFTTDRDII 372          
BLAST of FC873566 vs. ExPASy Swiss-Prot
Match: S47A1_RABIT (Multidrug and toxin extrusion protein 1 OS=Oryctolagus cuniculus GN=SLC47A1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.941e-16
Identity = 59/210 (28.10%), Postives = 108/210 (51.43%), Query Frame = 3
Query:   84 FVFSLTIQKYLQAQ---LKNMIVGWLSAVAFAVHVALSWIFVSKLNLGIPGAMSAMIIASWFIVIGQFVYLFGGWCPN-TWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNALLVLLAGYMKNATIEISSFSICLNIISWEFMLVFGFLAASGVRVSNELGRGDAKAAKFSVKVAIATTTVIGFFFSLICLVFSRKLAHLFTSNDEVI 701
            F+++L + KYL  Q   L  ++ G     A  V+   +++FV +L+LG+ G+  A  +A + + +  F+Y+        TW G+S     D     +L+I S +M+C+E+W   +   L+G +    +E+ + S+   +    +M+  G   A  VRV N LG G+ + AK S  VA+  T +I   F ++ L     + ++FTS+ ++I
Sbjct:  168 FLYTLQV-KYLLNQGIVLPQVVTG---VAANLVNALANYLFVYQLHLGVMGSALANTVAQFTLALLLFLYILRSKVYQATWGGWSLECLQDWASFFRLAIPSMLMLCMEWWAYEIGSFLSGIL--GMVELGAQSVTYELAVIVYMIPMGLSVAVNVRVGNALGAGNIEQAKKSSAVALLVTELIAVVFCVMLLSCKDLVGYIFTSDRDII 371          
BLAST of FC873566 vs. ExPASy Swiss-Prot
Match: S47A1_MOUSE (Multidrug and toxin extrusion protein 1 OS=Mus musculus GN=Slc47a1 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.638e-15
Identity = 65/258 (25.19%), Postives = 117/258 (45.35%), Query Frame = 3
Query:   84 FVFSLTIQKYLQAQ---LKNMIVGWLSAVAFAVHVALSWIFVSKLNLGIPGAMSAMIIASWFIVIGQFVY-LFGGWCPNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNALLVLLAGYMKNATIEISSFSICLNIISWEFMLVFGFLAASGVRVSNELGRGDAKAAKFSVKVAIATTTVIGFFFSLICLVFSRKLAHLFTSNDEVIEXXXXXXXXXXXXXXXNGFQAVLSXXXXXXXXXXXXXYINIICYYFIG 845
            F+++L + KYL  Q   L  ++ G     A  V+   +++F+  L+LG+ G+  A  I+ + + I  F+Y L+      TW G+S     D    L+L+I S +M+C+E+W   +   L+G +    +E+ + SI   +    +M+  GF  A+ VRV N LG G+   AK S  +++  T +    F ++ L     + ++FT++ +++                 G                    +N I YY IG
Sbjct:  169 FLYTLQV-KYLLNQGIVLPQIMTG---IAANLVNALANYVFLYHLHLGVMGSALANTISQFALAIFLFLYILWRRLHQATWGGWSWECLQDWASFLRLAIPSMLMLCIEWWAYEVGSFLSGIL--GMVELGAQSITYELAIIVYMIPSGFSVAANVRVGNALGAGNIDQAKKSSAISLIVTELFAVTFCVLLLGCKDLVGYIFTTDRDIVALVAQVIPIYAVSHLFEGLACTCGGILRGTGNQKVGAIVNAIGYYVIG 420          
BLAST of FC873566 vs. ExPASy Swiss-Prot
Match: YL47_SCHPO (Uncharacterized transporter C323.07c OS=Schizosaccharomyces pombe GN=SPAC323.07c PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.445e-15
Identity = 61/202 (30.20%), Postives = 94/202 (46.53%), Query Frame = 3
Query:  102 IQKYLQAQLKNMIVGWLSAVAFAVHVALSWIFV--SKLNLGIPGAMSAMIIASWFIVIGQFVYLFGGWCPNTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNALLVLLAGYMKNATIEISSFSICLNIISWEFMLVFGFLAASGVRVSNELGRGDAKAAKFSVKVAIATTTVIGFFFSLICLVFSRKLAHLFTSNDEVI 701
            +++YLQAQ     + ++   A  +++ L+++ V    +  G  GA  A+    WF  I   +Y+     P  W GFS  A  +L P+L  S    +MI  E+    +  L AGY+   T  ++S SI L   S  F + F F  AS  RV + +G G A  A+   +VA +    I  F   +   F      LFTS+ EV+
Sbjct:  230 LKRYLQAQGIFTPITYVLCFAAPLNILLNYLLVWHPTIGFGFLGAPVAVATTFWFQSICLILYICFSSTPIPWPGFSRQALKNLSPMLHFSFHGMLMIVTEWAAYEMTSLGAGYL--GTAPLASQSILLTSTSLLFQIPFAFAVASSTRVGHLIGSGRANLARLCSRVAYSLALCISIFDGSLIFCFRDVWGSLFTSDPEVL 429          
BLAST of FC873566 vs. ExPASy Swiss-Prot
Match: S47A2_MOUSE (Multidrug and toxin extrusion protein 2 OS=Mus musculus GN=Slc47a2 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.499e-15
Identity = 60/212 (28.30%), Postives = 109/212 (51.42%), Query Frame = 3
Query:   84 FVFSLTIQKYLQAQ---LKNMIVGWLSAVAFAVHVALSWIFVSKLNLGIPGAMSAMIIASWFIVIGQFVYLFGGWCP---NTWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNALLVLLAGYMKNATIEISSFSICLNIISWEFMLVFGFLAASGVRVSNELGRGDAKAAKFSVKVAIATTTVIGFFFSLICLVFSRKLAHLFTSNDEVI 701
            F+F L   +YLQ+Q   +  +IVG     A  V+V ++   +  L+LG+ G+  A   + +F+    F+Y++  W     +TW G++   F +     +L+I S  M+C+E+W   +   LAG + N T E+ + ++   + S  +M+ FGF  A+ VRV N LG G+A  A+ S    +    V      ++       +A++FT++ ++I
Sbjct:  178 FLFQLQT-RYLQSQGIIMPQVIVG---IAANVVNVGMNAFLLYALDLGVVGSAWANTTSQFFLSALLFLYVW--WKRIHIHTWGGWTRECFQEWSSYTRLAIPSMFMVCIEWWTFEIGTFLAGLV-NVT-ELGAQAVIYELASVAYMVPFGFGVAASVRVGNALGAGNADQARCSCTTVLLCAGVCALLVGILLAALKDVVAYIFTNDKDII 381          
BLAST of FC873566 vs. ExPASy Swiss-Prot
Match: S47A1_RAT (Multidrug and toxin extrusion protein 1 OS=Rattus norvegicus GN=Slc47a1 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.674e-15
Identity = 58/210 (27.62%), Postives = 110/210 (52.38%), Query Frame = 3
Query:   84 FVFSLTIQKYLQAQ---LKNMIVGWLSAVAFAVHVALSWIFVSKLNLGIPGAMSAMIIASWFIVIGQFVYLFGGWCPN-TWKGFSSAAFADLYPVLKLSISSGVMICLEFWYNALLVLLAGYMKNATIEISSFSICLNIISWEFMLVFGFLAASGVRVSNELGRGDAKAAKFSVKVAIATTTVIGFFFSLICLVFSRKLAHLFTSNDEVI 701
            F+++L + KYL  Q   L  +I G     A  V+   +++F+ +L+LG+ G+  A  I+ + + I  F+Y+      + TW G+S     D    L+L+I S +M+C+E+W   +   L+G +    +E+ + SI   +    +M+  GF  A+ VRV N LG G+   AK S  +++  T +    F ++ L     + ++FT++ +++
Sbjct:  168 FLYTLQV-KYLLNQGIVLPQVITG---IAANLVNALANYLFLHQLHLGVMGSALANTISQFALAIFLFLYILWRKLHHATWGGWSWECLQDWASFLQLAIPSMLMLCIEWWAYEVGSFLSGIL--GMVELGAQSITYELAIIVYMIPAGFSVAANVRVGNALGAGNIDQAKKSSAISLIVTELFAVTFCVLLLGCKDLVGYIFTTDWDIV 371          
The following BLAST results are available for this feature:
BLAST of FC873566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
TT12_ARATH5.100e-4334.16Protein TRANSPARENT TESTA 12 OS=Arabidopsis thalia... [more]
YJ2D_SCHPO5.136e-1924.40Uncharacterized transporter C4B3.13 OS=Schizosacch... [more]
S47A1_HUMAN2.818e-1728.57Multidrug and toxin extrusion protein 1 OS=Homo sa... [more]
S47A1_DANRE3.681e-1722.45Multidrug and toxin extrusion protein 1 OS=Danio r... [more]
S47A1_PONAB4.069e-1628.10Multidrug and toxin extrusion protein 1 OS=Pongo a... [more]
S47A1_RABIT6.941e-1628.10Multidrug and toxin extrusion protein 1 OS=Oryctol... [more]
S47A1_MOUSE2.638e-1525.19Multidrug and toxin extrusion protein 1 OS=Mus mus... [more]
YL47_SCHPO3.445e-1530.20Uncharacterized transporter C323.07c OS=Schizosacc... [more]
S47A2_MOUSE4.499e-1528.30Multidrug and toxin extrusion protein 2 OS=Mus mus... [more]
S47A1_RAT7.674e-1527.62Multidrug and toxin extrusion protein 1 OS=Rattus ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3BG10FM1 AbsDev Citrus clementina cDNA clone KN0AAI3BG10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873566 ID=FC873566; Name=FC873566; organism=Citrus clementina; type=EST; length=845bp
TTTTCAAACTGCTCGGAGAACAAACAGACATAGCAAACAGAGCCGGAGAC
ATCTCACTTTGGTTCATTGGCATTCTCTATTTCTTTGTCTTCAGCTTAAC
GATCCAAAAGTACTTGCAAGCACAGCTCAAGAACATGATCGTCGGATGGC
TTTCGGCTGTTGCATTTGCTGTTCATGTGGCCTTGTCATGGATCTTTGTG
AGCAAATTGAACTTGGGGATTCCTGGTGCAATGAGTGCAATGATAATCGC
AAGTTGGTTTATAGTAATTGGACAGTTTGTGTATCTCTTTGGCGGTTGGT
GTCCCAATACATGGAAAGGATTCAGTTCTGCAGCTTTTGCTGATTTGTAT
CCTGTTTTGAAGCTCTCAATATCCTCAGGTGTAATGATTTGCTTAGAGTT
TTGGTACAATGCTCTTCTAGTCCTATTAGCAGGATATATGAAAAATGCCA
CAATTGAGATTTCTTCCTTCTCCATTTGCCTCAATATCATATCTTGGGAA
TTTATGTTGGTCTTTGGCTTCCTAGCTGCCTCTGGCGTGCGGGTTTCAAA
TGAACTGGGGAGAGGAGATGCTAAAGCTGCGAAATTTTCTGTAAAAGTTG
CAATAGCTACCACAACTGTCATTGGATTTTTCTTTTCCTTAATCTGCTTA
GTCTTCAGCCGTAAGCTAGCACATTTGTTCACAAGTAATGATGAAGTAAT
AGAATCCGTCACAAGCCTCTCAGTGCTGCTTGCTTTCTCGGTTTTACTCA
ATGGCTTTCAGGCAGTACTCTCAGGGGTGGCAGTAGGTGCTGGCCGGCAG
GCTGTGGTTGCATATATTAACATCATTTGCTATTATTTCATTGGC
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