FC873567
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC873567 vs. ExPASy Swiss-Prot
Match: SGS3_SOLLC (Protein SUPPRESSOR OF GENE SILENCING 3 OS=Solanum lycopersicum GN=SGS3 PE=1 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 2.437e-34 Identity = 67/109 (61.47%), Postives = 92/109 (84.40%), Query Frame = 3 Query: 3 FKDQIRIIHEARDEKEENFEKLQQQEREKVKQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKYS 329 FKDQI+IIH+AR +E+NFEK QQ++RE VKQS AN + ED+++RAE++AKFI +QDKEMEEFV R+ L++ H +++ A+RR++WEEEVELE+ FD EL++LMEKYS Sbjct: 512 FKDQIKIIHDARTAREDNFEKTQQEQREMVKQSNANTASVEDHRVRAEKVAKFIKLQDKEMEEFVEERENLMRTHDDRIAALRRKYWEEEVELERKFDLELSKLMEKYS 620
BLAST of FC873567 vs. ExPASy Swiss-Prot
Match: SGS3_ARATH (Protein SUPPRESSOR OF GENE SILENCING 3 OS=Arabidopsis thaliana GN=SGS3 PE=1 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 9.283e-26 Identity = 62/114 (54.39%), Postives = 77/114 (67.54%), Query Frame = 3 Query: 3 FKDQIRIIHEARDEKEENFEKLQQQEREKV---KQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKYSTH 335 F D I+ IHE RD KEENFE LQQQER KV +Q NP + +D + RAEE++ FI Q+KEMEEFV R+ LIK +KM+ M++RH EE +LEK FD L QLM K+ H Sbjct: 508 FMDSIKQIHERRDAKEENFEMLQQQERAKVVGQQQQNINPSSNDDCRKRAEEVSSFIEFQEKEMEEFVEEREMLIKDQEKKMEDMKKRHHEEIFDLEKEFDEALEQLMYKHGLH 621
BLAST of FC873567 vs. ExPASy Swiss-Prot
Match: SGS3_ORYSJ (Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Oryza sativa subsp. japonica GN=SGS3 PE=2 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.366e-21 Identity = 54/112 (48.21%), Postives = 72/112 (64.29%), Query Frame = 3 Query: 3 FKDQIRIIHEARDEKEENFEKLQQQEREKVKQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKYSTHI 338 F DQI IH+A +EKE FEKL Q+ER K +QS + +TED + R E+I FI Q K++EEF A RD+LIK H EK +++ + +E ELEK D LT LM+K+ I Sbjct: 489 FHDQIEKIHKATEEKEIKFEKLLQEERAKARQSDVDSGSTEDRRQRKEKIQNFIDCQVKDVEEFEAERDKLIKLHEEKKVKLKKEYLAKEFELEKELDTALTSLMDKHKPDI 600
BLAST of FC873567 vs. ExPASy Swiss-Prot
Match: SGS3_ORYSI (Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Oryza sativa subsp. indica GN=SGS3 PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.174e-20 Identity = 53/112 (47.32%), Postives = 71/112 (63.39%), Query Frame = 3 Query: 3 FKDQIRIIHEARDEKEENFEKLQQQEREKVKQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKYSTHI 338 F DQI IH+ +EKE FEKL Q+ER K +QS + +TED + R E+I FI Q K++EEF A RD+LIK H EK +++ + +E ELEK D LT LM+K+ I Sbjct: 489 FHDQIEKIHKPTEEKEIKFEKLLQEERAKARQSDVDSGSTEDRRQRKEKIQNFIDCQVKDVEEFEAERDKLIKLHEEKKVKLKKEYLAKEFELEKELDTALTALMDKHKPDI 600
BLAST of FC873567 vs. ExPASy Swiss-Prot
Match: SGS3_MAIZE (Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Zea mays GN=SGS3 PE=1 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 9.305e-18 Identity = 48/117 (41.03%), Postives = 71/117 (60.68%), Query Frame = 3 Query: 3 FKDQIRIIHEARDEKEENFEKLQQQEREKVKQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKYSTHITEVAA 353 F I IH+A ++KE+ FEKL Q+ER K ++ + +D +LR E + KFI Q K++ EF RD LIK H +K +++ + + E+ELEK FDA LT LMEK+ E ++ Sbjct: 477 FHGLIEDIHKATEDKEKQFEKLLQEERSKARRFDVDSGTMKDRQLRKEYVQKFIDCQVKDVAEFEVERDELIKVHEDKKLKLKKEYMDLELELEKEFDAALTGLMEKHKPDTFEASS 593 The following BLAST results are available for this feature:
BLAST of FC873567 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC873567 ID=FC873567; Name=FC873567; organism=Citrus clementina; type=EST; length=610bpback to top |