FC873567

Overview
NameFC873567
Unique NameFC873567
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length610
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5800 contig Ccv1_Contig5800:1758..2367. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873567 vs. ExPASy Swiss-Prot
Match: SGS3_SOLLC (Protein SUPPRESSOR OF GENE SILENCING 3 OS=Solanum lycopersicum GN=SGS3 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.437e-34
Identity = 67/109 (61.47%), Postives = 92/109 (84.40%), Query Frame = 3
Query:    3 FKDQIRIIHEARDEKEENFEKLQQQEREKVKQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKYS 329
            FKDQI+IIH+AR  +E+NFEK QQ++RE VKQS AN  + ED+++RAE++AKFI +QDKEMEEFV  R+ L++ H +++ A+RR++WEEEVELE+ FD EL++LMEKYS
Sbjct:  512 FKDQIKIIHDARTAREDNFEKTQQEQREMVKQSNANTASVEDHRVRAEKVAKFIKLQDKEMEEFVEERENLMRTHDDRIAALRRKYWEEEVELERKFDLELSKLMEKYS 620          
BLAST of FC873567 vs. ExPASy Swiss-Prot
Match: SGS3_ARATH (Protein SUPPRESSOR OF GENE SILENCING 3 OS=Arabidopsis thaliana GN=SGS3 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 9.283e-26
Identity = 62/114 (54.39%), Postives = 77/114 (67.54%), Query Frame = 3
Query:    3 FKDQIRIIHEARDEKEENFEKLQQQEREKV---KQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKYSTH 335
            F D I+ IHE RD KEENFE LQQQER KV   +Q   NP + +D + RAEE++ FI  Q+KEMEEFV  R+ LIK   +KM+ M++RH EE  +LEK FD  L QLM K+  H
Sbjct:  508 FMDSIKQIHERRDAKEENFEMLQQQERAKVVGQQQQNINPSSNDDCRKRAEEVSSFIEFQEKEMEEFVEEREMLIKDQEKKMEDMKKRHHEEIFDLEKEFDEALEQLMYKHGLH 621          
BLAST of FC873567 vs. ExPASy Swiss-Prot
Match: SGS3_ORYSJ (Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Oryza sativa subsp. japonica GN=SGS3 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.366e-21
Identity = 54/112 (48.21%), Postives = 72/112 (64.29%), Query Frame = 3
Query:    3 FKDQIRIIHEARDEKEENFEKLQQQEREKVKQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKYSTHI 338
            F DQI  IH+A +EKE  FEKL Q+ER K +QS  +  +TED + R E+I  FI  Q K++EEF A RD+LIK H EK   +++ +  +E ELEK  D  LT LM+K+   I
Sbjct:  489 FHDQIEKIHKATEEKEIKFEKLLQEERAKARQSDVDSGSTEDRRQRKEKIQNFIDCQVKDVEEFEAERDKLIKLHEEKKVKLKKEYLAKEFELEKELDTALTSLMDKHKPDI 600          
BLAST of FC873567 vs. ExPASy Swiss-Prot
Match: SGS3_ORYSI (Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Oryza sativa subsp. indica GN=SGS3 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.174e-20
Identity = 53/112 (47.32%), Postives = 71/112 (63.39%), Query Frame = 3
Query:    3 FKDQIRIIHEARDEKEENFEKLQQQEREKVKQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKYSTHI 338
            F DQI  IH+  +EKE  FEKL Q+ER K +QS  +  +TED + R E+I  FI  Q K++EEF A RD+LIK H EK   +++ +  +E ELEK  D  LT LM+K+   I
Sbjct:  489 FHDQIEKIHKPTEEKEIKFEKLLQEERAKARQSDVDSGSTEDRRQRKEKIQNFIDCQVKDVEEFEAERDKLIKLHEEKKVKLKKEYLAKEFELEKELDTALTALMDKHKPDI 600          
BLAST of FC873567 vs. ExPASy Swiss-Prot
Match: SGS3_MAIZE (Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Zea mays GN=SGS3 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.305e-18
Identity = 48/117 (41.03%), Postives = 71/117 (60.68%), Query Frame = 3
Query:    3 FKDQIRIIHEARDEKEENFEKLQQQEREKVKQSIANPKNTEDYKLRAEEIAKFITVQDKEMEEFVAARDRLIKFHGEKMDAMRRRHWEEEVELEKGFDAELTQLMEKYSTHITEVAA 353
            F   I  IH+A ++KE+ FEKL Q+ER K ++   +    +D +LR E + KFI  Q K++ EF   RD LIK H +K   +++ + + E+ELEK FDA LT LMEK+     E ++
Sbjct:  477 FHGLIEDIHKATEDKEKQFEKLLQEERSKARRFDVDSGTMKDRQLRKEYVQKFIDCQVKDVAEFEVERDELIKVHEDKKLKLKKEYMDLELELEKEFDAALTGLMEKHKPDTFEASS 593          
The following BLAST results are available for this feature:
BLAST of FC873567 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
SGS3_SOLLC2.437e-3461.47Protein SUPPRESSOR OF GENE SILENCING 3 OS=Solanum ... [more]
SGS3_ARATH9.283e-2654.39Protein SUPPRESSOR OF GENE SILENCING 3 OS=Arabidop... [more]
SGS3_ORYSJ2.366e-2148.21Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=... [more]
SGS3_ORYSI1.174e-2047.32Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=... [more]
SGS3_MAIZE9.305e-1841.03Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAI3BG11FM1 AbsDev Citrus clementina cDNA clone KN0AAI3BG11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873567 ID=FC873567; Name=FC873567; organism=Citrus clementina; type=EST; length=610bp
TCTTCAAGGACCAGATTAGAATAATTCATGAAGCAAGGGATGAAAAGGAA
GAGAATTTTGAGAAGCTGCAACAACAGGAACGAGAGAAGGTGAAGCAATC
AATTGCTAATCCTAAAAACACTGAGGACTACAAGCTCAGGGCAGAGGAAA
TTGCCAAGTTCATAACGGTTCAAGACAAAGAAATGGAAGAGTTTGTGGCA
GCAAGGGACCGGCTGATAAAATTTCACGGTGAGAAGATGGATGCAATGAG
GCGGAGGCATTGGGAGGAAGAGGTTGAACTTGAGAAAGGATTTGATGCTG
AGTTGACTCAATTGATGGAGAAGTACTCTACTCATATAACAGAGGTTGCC
GCTGACAGTGTTTGATGCTGAGATGCAAGGAATGTTAGAAAAATAGCATA
CTAACTTGATGAGCAGCATAGAATTTGATCATACAATCCTGAGAATATTT
AAGACTTCTTTTGATATATTCTCCGTTAAGACTTTTCTTTTGATATATTC
TCCGAATTACAAACTCAAGAGAGGTATAAACATTTGAATATAGCAATATG
AAAAATGGACCGCCAATTTATATTGGTGGCTTAAAGATCTTAAAAAAAAA
AAAAAAAAAA
back to top