FC873624

Overview
NameFC873624
Unique NameFC873624
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length427
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2562 contig Ccv1_Contig2562:322..747. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873624 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 4.021e-28
Identity = 58/89 (65.17%), Postives = 71/89 (79.78%), Query Frame = 3
Query:   48 GQVTASLAPCIPFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACICLKRAY*TIRGIKPNVAAGLPSQCGLPIPYKISPSTDCSRVR 314
            GQV++SLAPCI +LR GG   P  CCNGVRSLN AA+TT DRQAAC CLK A+ +I+G+  N+AAGLP +CG+ +PYKISPSTDC  V+
Sbjct:    4 GQVSSSLAPCINYLRAGG-VVPANCCNGVRSLNNAAKTTADRQAACNCLKSAFNSIKGLNLNLAAGLPGKCGVSVPYKISPSTDCKSVK 91          
BLAST of FC873624 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.996e-27
Identity = 57/89 (64.04%), Postives = 69/89 (77.53%), Query Frame = 3
Query:   48 GQVTASLAPCIPFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACICLKRAY*TIRGIKPNVAAGLPSQCGLPIPYKISPSTDCSRVR 314
            GQV++SLAPCI +L  GG  PP  CC+GV+SLN AA+TTPDRQAAC CLK AY +I G+    AA  P +CG+ IPYKISPSTDCS+V+
Sbjct:   29 GQVSSSLAPCISYLTKGGAVPPA-CCSGVKSLNSAAKTTPDRQAACGCLKSAYNSISGVNAGNAASFPGKCGVSIPYKISPSTDCSKVQ 116          
BLAST of FC873624 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.446e-27
Identity = 53/89 (59.55%), Postives = 71/89 (79.78%), Query Frame = 3
Query:   48 GQVTASLAPCIPFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACICLKRAY*TIRGIKPNVAAGLPSQCGLPIPYKISPSTDCSRVR 314
            GQV+++LAPCIP++R GG  PP  CCNG+R++N  ARTTPDRQAAC CLK+   ++ G+ PN AA LP +CG+ IPY+ISPST+C+ V+
Sbjct:   30 GQVSSNLAPCIPYVRGGGAVPPA-CCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVNIPYQISPSTNCANVK 117          
BLAST of FC873624 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.905e-27
Identity = 54/89 (60.67%), Postives = 69/89 (77.53%), Query Frame = 3
Query:   48 GQVTASLAPCIPFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACICLKRAY*TIRGIKPNVAAGLPSQCGLPIPYKISPSTDCSRVR 314
            GQVT+SLAPCI ++R+GG  PP  CCNG+R++NG ARTT DRQ AC CLK    +I G+ PN AAGLP +CG+ +PYKIS ST+C+ V+
Sbjct:   28 GQVTSSLAPCIGYVRSGGAVPPA-CCNGIRTINGLARTTADRQTACNCLKNLAGSISGVNPNNAAGLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of FC873624 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUPE (Non-specific lipid-transfer protein 1 OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.690e-26
Identity = 53/89 (59.55%), Postives = 70/89 (78.65%), Query Frame = 3
Query:   48 GQVTASLAPCIPFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACICLKRAY*TIRGIKPNVAAGLPSQCGLPIPYKISPSTDCSRVR 314
            GQV+++LAPCIP++R GG  PP  CCNG+R++N  ARTTPDRQAAC CLK+   ++ G+ PN AA LP +CG+ IPYKIS ST+C+ V+
Sbjct:    4 GQVSSALAPCIPYVRGGGAVPPA-CCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVHIPYKISASTNCATVK 91          
BLAST of FC873624 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUAR (Non-specific lipid-transfer protein 1 OS=Prunus armeniaca PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 4.162e-25
Identity = 52/89 (58.43%), Postives = 68/89 (76.40%), Query Frame = 3
Query:   48 GQVTASLAPCIPFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACICLKRAY*TIRGIKPNVAAGLPSQCGLPIPYKISPSTDCSRVR 314
            GQV++SLAPCI ++R GG  PP  CCNG+R++N  ARTTPDR+ AC CLK+   +I G+ PN AA LP +CG+ IPYKIS ST+C+ V+
Sbjct:    4 GQVSSSLAPCIGYVRGGGAVPPA-CCNGIRNVNNLARTTPDRRTACNCLKQLSGSISGVNPNNAAALPGKCGVNIPYKISASTNCATVK 91          
BLAST of FC873624 vs. ExPASy Swiss-Prot
Match: NLTP2_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.435e-25
Identity = 56/91 (61.54%), Postives = 68/91 (74.73%), Query Frame = 3
Query:   45 SGQVTASLAPCIPFLR-TGGRFPPPPCCNGVRSLNGAARTTPDRQAACICLKRAY*TIRGIKPNVAAGLPSQCGLPIPYKISPSTDCSRVR 314
            SGQVT SLAPCI +LR +G    PP CC G++SLN AA+TTP RQAAC C+K A   I GI   +A+GLP +CG+ IPYKISPSTDC+ V+
Sbjct:   30 SGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 120          
BLAST of FC873624 vs. ExPASy Swiss-Prot
Match: NLTP1_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.435e-25
Identity = 56/91 (61.54%), Postives = 68/91 (74.73%), Query Frame = 3
Query:   45 SGQVTASLAPCIPFLR-TGGRFPPPPCCNGVRSLNGAARTTPDRQAACICLKRAY*TIRGIKPNVAAGLPSQCGLPIPYKISPSTDCSRVR 314
            SGQVT SLAPCI +LR +G    PP CC G++SLN AA+TTP RQAAC C+K A   I GI   +A+GLP +CG+ IPYKISPSTDC+ V+
Sbjct:   26 SGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 116          
BLAST of FC873624 vs. ExPASy Swiss-Prot
Match: NLTP_PYRCO (Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.523e-24
Identity = 48/88 (54.55%), Postives = 67/88 (76.14%), Query Frame = 3
Query:   51 QVTASLAPCIPFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACICLKRAY*TIRGIKPNVAAGLPSQCGLPIPYKISPSTDCSRVR 314
            QV+A+LAPCI ++R+GG  PP  CCNG++++NG A+TTPDRQAAC CLK    ++ G+ P  A  LP +CG+ +PYKIS ST+C+ V+
Sbjct:   29 QVSANLAPCINYVRSGGAVPPA-CCNGIKTINGLAKTTPDRQAACNCLKNLAGSVSGVNPGNAESLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of FC873624 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.848e-24
Identity = 48/89 (53.93%), Postives = 67/89 (75.28%), Query Frame = 3
Query:   48 GQVTASLAPCIPFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACICLKRAY*TIRGIKPNVAAGLPSQCGLPIPYKISPSTDCSRVR 314
            GQV+++LAPCI ++R GG  PP  CCNG+R++N  A+TT DRQ AC CLK+   ++ G+  N AA LP +CG+ +PYKISPST+C+ V+
Sbjct:   30 GQVSSNLAPCIAYVRGGGAVPPA-CCNGIRNINNLAKTTADRQTACNCLKQLSASVPGVNANNAAALPGKCGVNVPYKISPSTNCATVK 117          
The following BLAST results are available for this feature:
BLAST of FC873624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
LTP1_MORNI4.021e-2865.17Non-specific lipid-transfer protein 1 OS=Morus nig... [more]
NLTP_HELAN1.996e-2764.04Non-specific lipid-transfer protein OS=Helianthus ... [more]
NLTP1_PRUDU4.446e-2759.55Non-specific lipid-transfer protein 1 OS=Prunus du... [more]
NLTP_MALDO9.905e-2760.67Non-specific lipid-transfer protein OS=Malus domes... [more]
NLTP1_PRUPE1.690e-2659.55Non-specific lipid-transfer protein 1 OS=Prunus pe... [more]
NLTP1_PRUAR4.162e-2558.43Non-specific lipid-transfer protein 1 OS=Prunus ar... [more]
NLTP2_GOSHI5.435e-2561.54Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP1_GOSHI5.435e-2561.54Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP_PYRCO3.523e-2454.55Non-specific lipid-transfer protein OS=Pyrus commu... [more]
NLTP_PRUAV7.848e-2453.93Non-specific lipid-transfer protein OS=Prunus aviu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3CA06FM1 AbsDev Citrus clementina cDNA clone KN0AAI3CA06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873624 ID=FC873624; Name=FC873624; organism=Citrus clementina; type=EST; length=427bp
TTTCTCGGTTCGGGCGACTGCCCCGGTGACTAATGCCATAACATAGCGGG
CAGGTGACAGCCTCCTTGGCTCCATGCATCCCTTTCCTGAGAACTGGAGG
GCGTTTTCCTCCACCGCCATGCTGTAACGGCGTCAGGTCTCTCAACGGCG
CCGCCAGAACCACCCCTGACCGCCAAGCTGCATGCATCTGCTTGAAACGA
GCTTACTGAACAATCCGCGGCATCAAACCTAATGTTGCCGCTGGCCTTCC
TAGTCAATGTGGACTCCCAATTCCTTACAAGATCAGCCCCAGCACCGACT
GCTCGAGGGTCAGGTGAAGTTGAGTTTGAGCTCTGTGACTTTCCAAGTAT
GATTGACTGATAAGAATAAATAACTAAAGAATATCTATGTTAATTTCTTT
GTCCGAACGAGTCTCCACTTGTATGAG
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