FC873628

Overview
NameFC873628
Unique NameFC873628
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length789
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1114 contig Ccv1_Contig1114:1..788. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873628 vs. ExPASy Swiss-Prot
Match: LOX5_ARATH (Lipoxygenase 5, chloroplastic OS=Arabidopsis thaliana GN=LOX5 PE=1 SV=2)

HSP 1 Score: 271.166 bits (692), Expect = 4.710e-72
Identity = 118/241 (48.96%), Postives = 167/241 (69.29%), Query Frame = 1
Query:    1 ILFQDYPYGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHEFAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKNDGGLTGKGIPNSISI 723
            +L +DYP+ +DGL++W AI TWV +YC+ +Y +D +V++D EIQ+WW E+R  GHGDKR+ SWW  M +RD+LI+  TI+IW +SALHA+VNFGQY YAG+ PNRPT+ R+F+P+ GT E+AEL  D+D  +LK +  +    L  +++E+LS H++DE+YLGQR S  WT D                    I+ RN + R KNR GP  I Y L++P+T++   +GG+TGKGIPNS+SI
Sbjct:  646 LLIEDYPFAVDGLEIWSAIKTWVTEYCTFYYNNDKTVQTDTEIQSWWTELRTKGHGDKRHESWWPSMQTRDDLIETCTIIIWIASALHAAVNFGQYPYAGFLPNRPTVSRRFMPEPGTDEYAELEEDADVAFLKTITPQLQTLLGISIIEILSMHSTDEIYLGQRDSPNWTADDEPLEAFKRFGKELELIENNIIRRNNDKRFKNRTGPVNIPYTLLYPNTTDYTREGGITGKGIPNSVSI 886          
BLAST of FC873628 vs. ExPASy Swiss-Prot
Match: LOXA_SOLLC (Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 8.883e-71
Identity = 122/241 (50.62%), Postives = 162/241 (67.22%), Query Frame = 1
Query:    1 ILFQDYPYGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHEFAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKNDGGLTGKGIPNSISI 723
            +L  DYPY +DGL++W AI +WV DYCS +Y  ++ +  D E+QAWWKE+REVGHGDK+N  WW EM +   LI + T +IW +SALHA+VNFGQY YAGY PNRPT+ RKF+P+ GT E+ EL  + DK +LK +  +    L  +L+E+LSRHT+DE+YLGQR+S EWT D+                 ++I++RN N  L NR GP    Y L+ P      ++GGLTGKGIPNS+SI
Sbjct:  625 LLIDDYPYAVDGLEIWSAIKSWVTDYCSFYYGSNEEILKDNELQAWWKEVREVGHGDKKNEPWWAEMETPQELIDSCTTIIWIASALHAAVNFGQYPYAGYLPNRPTVSRKFMPEPGTPEYEELKKNPDKAFLKTITAQLQTLLGVSLIEILSRHTTDEIYLGQRESPEWTKDKEPLAAFERFGNKLTDIEKQIMQRNGNNILTNRTGPVNAPYTLLFP-----TSEGGLTGKGIPNSVSI 860          
BLAST of FC873628 vs. ExPASy Swiss-Prot
Match: LOX1_SOLTU (Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.515e-70
Identity = 122/241 (50.62%), Postives = 163/241 (67.63%), Query Frame = 1
Query:    1 ILFQDYPYGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHEFAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKNDGGLTGKGIPNSISI 723
            +L +DYPY +DGL++W AI +WV DYCS +Y  D+ +  D E+QAWWKE+REVGHGDK+N  WW EM +   LI + T +IW +SALHA+VNFGQY YAGY PNRPT+ R+F+P+ GT E+ EL  + DK +LK +  +    L  +LVE+LSRHT+DE+YLGQR+S EWT D+                 ++I++RN +  L NR GP    Y L+ P      ++GGLTGKGIPNS+SI
Sbjct:  626 LLIEDYPYAVDGLEIWSAIKSWVTDYCSFYYGSDEEILKDNELQAWWKELREVGHGDKKNEPWWPEMETPQELIDSCTTIIWIASALHAAVNFGQYPYAGYLPNRPTVSRRFMPEPGTPEYEELKRNPDKAFLKTITAQLQTLLGVSLVEILSRHTTDEIYLGQRESPEWTKDKEPLAAFDRFGKKLTDIEKQIIQRNGDNILTNRSGPVNAPYTLLFP-----TSEGGLTGKGIPNSVSI 861          
BLAST of FC873628 vs. ExPASy Swiss-Prot
Match: LOX3_PEA (Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=2 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.734e-66
Identity = 111/241 (46.06%), Postives = 165/241 (68.46%), Query Frame = 1
Query:    1 ILFQDYPYGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHEFAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKNDGGLTGKGIPNSISI 723
            ++ +DYPY +DGL++W  I TWV+DY S++Y  D+ ++ D E+QAWWKE+ EVGHGDK+N  WW +M +R++LI+  +I+IWT+SALHA+VNFGQY+Y G   NRPTL R+F+P++G+ EF EL+    K YLK +  +F   +  +++E+LSRH SDE+YLG+R +  WT D+                 +K+ +RN + +L+NR GP ++ Y L++P +       GLT +GIPNSISI
Sbjct:  626 LVVEDYPYAVDGLEIWAIIKTWVQDYVSLYYTSDEKLRQDSELQAWWKELVEVGHGDKKNEPWWPKMQTREDLIEVCSIVIWTASALHAAVNFGQYSYGGLILNRPTLSRRFMPEKGSAEFEELVKSPQKAYLKTITPKFQTLIDLSVIEILSRHASDELYLGERDNPNWTSDKRALEAFKKFGNKLAEIEKKLTQRNNDEKLRNRHGPVEMPYTLLYPSSKE-----GLTFRGIPNSISI 861          
BLAST of FC873628 vs. ExPASy Swiss-Prot
Match: LOX1_ORYSJ (Lipoxygenase 1 OS=Oryza sativa subsp. japonica GN=Os03g0699700 PE=2 SV=2)

HSP 1 Score: 250.751 bits (639), Expect = 6.588e-66
Identity = 114/242 (47.11%), Postives = 162/242 (66.94%), Query Frame = 1
Query:    1 ILFQDYPYGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHEFAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKNDG-GLTGKGIPNSISI 723
            +L +DYPY  DGL +W AI  WV +YC+I+Y +D  ++ D E+QAWWKE+REVGHGD ++A WW +M S   L +A T +IW +SALHA+VNFGQY YAGY PNRPT+ R+ +P+ G+ E+ EL  + +K++++ +  +F   L  +L+E+LS+H++DE+YLGQR + EWT D                   K++  N++  LKNR GPA   Y LM P+TS+ K    G+T +GIPNSISI
Sbjct:  622 LLIKDYPYATDGLAIWQAIEQWVTEYCAIYYPNDGVLQGDVELQAWWKEVREVGHGDLKDADWWPKMQSLPELTKACTTIIWIASALHAAVNFGQYPYAGYLPNRPTISRRPMPEPGSKEYTELDENPEKFFIRTITSQFQTILGVSLIEILSKHSADEIYLGQRDTPEWTSDPKALEAFKRFSRQLVEIESKVLNMNKDPLLKNRVGPANFPYTLMFPNTSDNKGAAEGITARGIPNSISI 863          
BLAST of FC873628 vs. ExPASy Swiss-Prot
Match: LOX1_ARATH (Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=1 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 8.604e-66
Identity = 115/238 (48.32%), Postives = 162/238 (68.07%), Query Frame = 1
Query:   10 QDYPYGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHEFAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKNDGGLTGKGIPNSISI 723
            +DYPY +DGL+VW AI +WV+DY  +FYK ++ +++D E+QAWWKE+RE GHGDK++  WW +M +R+ L+++ TI+IW +SALHA+VNFGQY  AGY PNRPT+ R+++P E T EF EL  + DK +LK +  +    L  +L+E+LS H+SDEVYLGQR S EW  ++                 + I ERN +  LKNR G  K+ Y L+ P      ++GG+TG+GIPNS+SI
Sbjct:  627 KDYPYAVDGLEVWYAIESWVRDYIFLFYKIEEDIQTDTELQAWWKEVREEGHGDKKSEPWWPKMQTREELVESCTIIIWVASALHAAVNFGQYPVAGYLPNRPTISRQYMPKENTPEFEELEKNPDKVFLKTITAQLQTLLGISLIEILSTHSSDEVYLGQRDSKEWAAEKEALEAFEKFGEKVKEIEKNIDERNDDETLKNRTGLVKMPYTLLFP-----SSEGGVTGRGIPNSVSI 859          
BLAST of FC873628 vs. ExPASy Swiss-Prot
Match: LOX3_SOYBN (Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 4.721e-64
Identity = 112/241 (46.47%), Postives = 160/241 (66.39%), Query Frame = 1
Query:    1 ILFQDYPYGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHEFAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKNDGGLTGKGIPNSISI 723
            ++ +DYPY +DGL++W AI TWV +Y  ++YK DD+++ D E+QA WKE+ EVGHGDK+N  WW +M +R+ L++A  I+IWT+SALHA+VNFGQY Y G   NRPTL R+F+P++G+ E+ EL  +  K YLK +  +F   +  +++E+LSRH SDEVYLG+R +  WT D                   K+ ERN + +L+NR GP ++ Y L+ P +       GLT +GIPNSISI
Sbjct:  622 LVIEDYPYAVDGLEIWDAIKTWVHEYVFLYYKSDDTLREDPELQACWKELVEVGHGDKKNEPWWPKMQTREELVEACAIIIWTASALHAAVNFGQYPYGGLILNRPTLSRRFMPEKGSAEYEELRKNPQKAYLKTITPKFQTLIDLSVIEILSRHASDEVYLGERDNPNWTSDTRALEAFKRFGNKLAQIENKLSERNNDEKLRNRCGPVQMPYTLLLPSSKE-----GLTFRGIPNSISI 857          
BLAST of FC873628 vs. ExPASy Swiss-Prot
Match: LOX4_ORYSJ (Probable lipoxygenase 4 OS=Oryza sativa subsp. japonica GN=Os03g0700700 PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 8.053e-64
Identity = 116/246 (47.15%), Postives = 165/246 (67.07%), Query Frame = 1
Query:    1 ILFQDYPYGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHEFAELL---IDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKND--GGLTGKGIPNSISI 723
            +L +DYPY +DGL +W AI  WV +Y +I+Y +D  ++ DEE+QAWWKE+REVGHGD ++  WW +M++   L +A TI+IW +SALHA+VNFGQY YAG+ PNRPT+ R+ +P+ GT E+A+L     ++D  ++  +  +F   L  +L+E+LS+H+SDEVYLGQR + EWT D                   +I + N N+ LKNR GP K+ Y L++P+TS+V  +   GLT  GIPNSISI
Sbjct:  632 LLIKDYPYAVDGLVIWWAIERWVGEYLAIYYPNDGVLRGDEELQAWWKEVREVGHGDLKDQDWWPKMDTVQELTRACTIIIWIASALHAAVNFGQYPYAGFLPNRPTVSRRPMPEPGTEEYAKLERGGDEADLVFIHTITSQFQTILGISLIEILSKHSSDEVYLGQRDTPEWTSDAKALDAFKRFGSRLVDIENRIKDMNGNSALKNRNGPVKMPYMLLYPNTSDVTKEKGQGLTAMGIPNSISI 877          
BLAST of FC873628 vs. ExPASy Swiss-Prot
Match: LOX2_PEA (Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 8.053e-64
Identity = 109/241 (45.23%), Postives = 157/241 (65.15%), Query Frame = 1
Query:    1 ILFQDYPYGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHEFAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKNDGGLTGKGIPNSISI 723
            +L +DYPY +DGL++W AI TWV+DY S++Y  D+ +K+D E+Q WWKE+ E GHGD ++  WW ++ + D L++  TI+IWT+SALHA+VNFGQY Y G   NRPTL R+ +P+EGT E+ E++  S K YL+ +  +F   +  +++E+LSRH SDEVYLGQR++  WT D                   K+  +N +  L +R GP ++ Y L+HP +       GLT +GIPNSISI
Sbjct:  629 LLIEDYPYAVDGLEIWTAIKTWVQDYVSLYYATDNDIKNDSELQHWWKEVVEKGHGDLKDKPWWPKLQTFDELVEVCTIIIWTASALHAAVNFGQYPYGGLILNRPTLSRRLLPEEGTAEYDEMVKSSQKAYLRTITPKFQTLIDLSVIEILSRHASDEVYLGQRENPHWTSDSKALQAFQKFGNKLAEIEAKLTNKNNDPSLYHRVGPVQLPYTLLHPSSKE-----GLTFRGIPNSISI 864          
BLAST of FC873628 vs. ExPASy Swiss-Prot
Match: LOX3_ORYSJ (Putative lipoxygenase 3 OS=Oryza sativa subsp. japonica GN=Os03g0700400 PE=3 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 3.060e-63
Identity = 114/242 (47.11%), Postives = 158/242 (65.29%), Query Frame = 1
Query:    1 ILFQDYPYGLDGLDVWLAIMTWVKDYCSIFYKDDDSVKSDEEIQAWWKEIREVGHGDKRNASWWFEMNSRDNLIQALTILIWTSSALHASVNFGQYAYAGYPPNRPTLCRKFIPDEGTHEFAELLIDSDKYYLKMLPERFAITLSTALVEVLSRHTSDEVYLGQRQSSEWTDDQXXXXXXXXXXXXXXXXXQKIVERNRNARLKNRWGPAKIAYKLMHPDTSNVKN-DGGLTGKGIPNSISI 723
            +L +DYPY  DGL++W AI  WV +Y +I+Y DD  ++ D E+QAWW E+REVGHGD + A+WW  M++   L  A T +IW +SALHA+VNFGQY YAGY PNRPT+ R+ +P+ GT  + EL  D ++ +++ +  +    +  +L+EVLS+H+SDEVYLGQR +  WT D                   K+V  N +A LKNR GPA+  Y L++P+TS+V     G+T KGIPNSISI
Sbjct:  625 LLIKDYPYAADGLEIWHAIEQWVGEYLAIYYTDDGVLRGDAELQAWWAEVREVGHGDLKGAAWWPRMDAVSELRDACTTIIWIASALHAAVNFGQYPYAGYLPNRPTVSRRRMPEPGTEAYGELGRDPERAFIRTITSQLQTIIGISLIEVLSKHSSDEVYLGQRDTPAWTSDARALEAFRRFSDRLVEIEGKVVGMNGDAGLKNRNGPAEFPYMLLYPNTSDVTGAAAGITAKGIPNSISI 866          
The following BLAST results are available for this feature:
BLAST of FC873628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
LOX5_ARATH4.710e-7248.96Lipoxygenase 5, chloroplastic OS=Arabidopsis thali... [more]
LOXA_SOLLC8.883e-7150.62Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 P... [more]
LOX1_SOLTU1.515e-7050.62Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2... [more]
LOX3_PEA1.734e-6646.06Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=... [more]
LOX1_ORYSJ6.588e-6647.11Lipoxygenase 1 OS=Oryza sativa subsp. japonica GN=... [more]
LOX1_ARATH8.604e-6648.32Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=... [more]
LOX3_SOYBN4.721e-6446.47Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 ... [more]
LOX4_ORYSJ8.053e-6447.15Probable lipoxygenase 4 OS=Oryza sativa subsp. jap... [more]
LOX2_PEA8.053e-6445.23Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=... [more]
LOX3_ORYSJ3.060e-6347.11Putative lipoxygenase 3 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1DE01FM2 AbsDev Citrus clementina cDNA clone KN0AAI1DE01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873628 ID=FC873628; Name=FC873628; organism=Citrus clementina; type=EST; length=789bp
ATTCTCTTCCAAGACTATCCCTATGGTTTAGATGGACTTGATGTATGGCT
TGCCATTATGACATGGGTCAAAGATTATTGCTCCATCTTCTACAAAGATG
ATGATTCTGTCAAGTCTGACGAGGAAATCCAAGCATGGTGGAAAGAAATC
CGAGAAGTAGGTCATGGTGATAAGCGCAATGCGAGCTGGTGGTTTGAAAT
GAACTCTCGTGACAACCTAATACAAGCTCTAACTATTCTCATATGGACTT
CGTCAGCCCTTCATGCTTCAGTGAACTTTGGGCAGTATGCATATGCTGGA
TACCCTCCAAATCGTCCCACACTATGTCGAAAATTCATTCCGGATGAAGG
AACACACGAATTTGCAGAGTTATTAATTGATTCAGACAAGTACTATCTTA
AAATGCTACCTGAAAGATTTGCGATAACCCTTAGTACTGCATTGGTAGAA
GTCTTATCGCGGCATACATCAGATGAAGTTTACTTGGGGCAGAGGCAATC
ATCAGAATGGACAGATGATCAGGAGGTTTTGCTAAAATTTGAAGAGTTCG
GTGAGAAGTTGAAAGAAATAGAGCAAAAAATCGTGGAGAGGAACAGAAAT
GCCAGGCTTAAGAACAGATGGGGACCTGCCAAGATAGCGTACAAACTTAT
GCATCCCGATACATCAAACGTCAAAAACGACGGAGGCCTCACAGGAAAAG
GTATCCCAAACAGTATATCCATTTAACGCAAGTTCAAGTACATTCAATAA
AAACTATTAAGCGCTTCTGGGTGTAAAAAAAAAAAAAAA
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