FC873630

Overview
NameFC873630
Unique NameFC873630
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig307 contig Ccv1_Contig307:365..1027. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873630 vs. ExPASy Swiss-Prot
Match: CYSPL_SOLLC (Low-temperature-induced cysteine proteinase (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.239e-21
Identity = 43/58 (74.14%), Postives = 48/58 (82.76%), Query Frame = 2
Query:    2 CPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQG 175
            CPLE ATCC+DHYSCCPHDYPICNVR GTC MSK NPLGV+A++R  A+P  A GN G
Sbjct:  284 CPLEGATCCEDHYSCCPHDYPICNVRQGTCSMSKGNPLGVKAMKRILAQPIGAFGNGG 341          
BLAST of FC873630 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.369e-20
Identity = 40/50 (80.00%), Postives = 46/50 (92.00%), Query Frame = 2
Query:    2 CPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKP 151
            CPLE ATCCDDHYSCCPH+YPICNV+ GTCLM+KD+PL V+AL+RT AKP
Sbjct:  395 CPLEGATCCDDHYSCCPHEYPICNVQQGTCLMAKDSPLAVKALKRTLAKP 444          
BLAST of FC873630 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.984e-20
Identity = 36/57 (63.16%), Postives = 49/57 (85.96%), Query Frame = 2
Query:    2 CPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQ 172
            CPLEAATCCDD+YSCCPH+YP+C++  GTCL+SK++P  V+AL+R PA P+W+ G +
Sbjct:  403 CPLEAATCCDDNYSCCPHEYPVCDLDQGTCLLSKNSPFSVKALKRKPATPFWSQGRK 459          
BLAST of FC873630 vs. ExPASy Swiss-Prot
Match: ORYB_ORYSJ (Oryzain beta chain OS=Oryza sativa subsp. japonica GN=Os04g0670200 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.016e-15
Identity = 34/49 (69.39%), Postives = 40/49 (81.63%), Query Frame = 2
Query:    2 CPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAK 148
            CP+E ATCC DH SCCP DYP+CN RAGTC  SK++PL V+AL+RT AK
Sbjct:  414 CPVEGATCCKDHASCCPPDYPVCNTRAGTCSASKNSPLSVKALKRTLAK 462          
The following BLAST results are available for this feature:
BLAST of FC873630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CYSPL_SOLLC1.239e-2174.14Low-temperature-induced cysteine proteinase (Fragm... [more]
ORYA_ORYSJ1.369e-2080.00Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
RD21A_ARATH3.984e-2063.16Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
ORYB_ORYSJ1.016e-1569.39Oryzain beta chain OS=Oryza sativa subsp. japonica... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI1DE03FM2 AbsDev Citrus clementina cDNA clone KN0AAI1DE03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873630 ID=FC873630; Name=FC873630; organism=Citrus clementina; type=EST; length=663bp
CTGCCCGCTTGAGGCTGCCACCTGCTGTGATGACCACTATAGCTGCTGCC
CACATGACTATCCCATCTGTAATGTTCGTGCTGGGACCTGCTTGATGAGC
AAGGACAACCCATTGGGAGTGAGGGCATTACGACGCACCCCTGCTAAACC
TTACTGGGCTCATGGAAATCAAGGTGGAAGTAGCAGTGCTTAATTATAGT
TGGCACTGTAAGAGCAGTGGAAGGCCGAAGGGAGGATGAAAATATTCGTG
CTTGTGAATGAGTTTCTCCCCGGCCTTAGTTCATTCTACTGCATTTCATT
CCAAACGTTAATGTACCGGCAGGTGGATGGTCTGTTAAATATTTATTCGG
ACGTTGGTTTGGTATATAGCGTTGTAAGTTATCTATCTGCGTTGAATCTG
AACAATGCACAAACAAATTGTTGTTATCTATTTCCAATGTCCTCTACCAA
ATCCCTGGCGTCATTCAGCGGAGGCTTTTATGAATTGATATTTAACGATT
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAACCCCCCCCTTTTTTTGTACAAATTTGGATTTAAAA
AAAAGCTTTTTTTTTCATTTTTTTGCACAAAACGGGCCCTTTCCATCCAA
AAAAAAACCTTTT
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