FC873638
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC873638 vs. ExPASy Swiss-Prot
Match: LCYE_SOLLC (Lycopene epsilon cyclase, chloroplastic OS=Solanum lycopersicum GN=CRTL-E-1 PE=2 SV=1) HSP 1 Score: 209.149 bits (531), Expect = 1.213e-53 Identity = 103/133 (77.44%), Postives = 116/133 (87.22%), Query Frame = 3 Query: 3 SEAPNYASAIAYILKHDHSRGRLTHEQSNENISMQAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRTFFRLPKWMWHGFLGSSLSSADLILFAFYMFIIAPNDLRKCLIRHLVSDPTGATMVRTYLT 401 SEAP AS +A IL+ +S+ LT S +IS QAWNTLWPQERKRQR+FFLFGLALILQLDIEGIR+FFR FFR+PKWMW GFLGSSLSSADL+LFAFYMFIIAPND+RK LIRHL+SDPTGAT++RTYLT Sbjct: 394 SEAPKCASVLANILRQHYSKNMLT-SSSIPSISTQAWNTLWPQERKRQRSFFLFGLALILQLDIEGIRSFFRAFFRVPKWMWQGFLGSSLSSADLMLFAFYMFIIAPNDMRKGLIRHLLSDPTGATLIRTYLT 525
BLAST of FC873638 vs. ExPASy Swiss-Prot
Match: LCYE_ARATH (Lycopene epsilon cyclase, chloroplastic OS=Arabidopsis thaliana GN=LUT2 PE=1 SV=2) HSP 1 Score: 197.593 bits (501), Expect = 3.653e-50 Identity = 95/132 (71.97%), Postives = 110/132 (83.33%), Query Frame = 3 Query: 3 SEAPNYASAIAYILKHDHSRGRLTHEQSNENISMQAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRTFFRLPKWMWHGFLGSSLSSADLILFAFYMFIIAPNDLRKCLIRHLVSDPTGATMVRTYL 398 SEAP YAS IA IL+ + T +Q N NIS QAW+TLWP ERKRQRAFFLFGLALI+Q D EGIR+FFRTFFRLPKWMW GFLGS+L+S DL+LFA YMF+I+PN+LRK LI HL+SDPTGATM++TYL Sbjct: 397 SEAPKYASVIAEILREE------TTKQINSNISRQAWDTLWPPERKRQRAFFLFGLALIVQFDTEGIRSFFRTFFRLPKWMWQGFLGSTLTSGDLVLFALYMFVISPNNLRKGLINHLISDPTGATMIKTYL 522
BLAST of FC873638 vs. ExPASy Swiss-Prot
Match: LCYB_CAPAN (Lycopene beta cyclase, chloroplastic/chromoplastic OS=Capsicum annuum GN=LCY1 PE=2 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.311e-15 Identity = 45/109 (41.28%), Postives = 58/109 (53.21%), Query Frame = 3 Query: 9 APNYASAIAYILKHDHSRGRLTHEQSNENISMQAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRTFFRLPKWMWHGFLGSSLSSADLILFAFYMFIIAPNDLR 335 AP A+AI L + S S + +S W LWP ER+RQR FF FG+ ++L+LD+ R FF FF L WHGFL S L +LI+F +F A N R Sbjct: 374 APVVANAIIQYLSSERSH-------SGDELSAAVWKDLWPIERRRQREFFCFGMDILLKLDLPATRRFFDAFFDLEPRYWHGFLSSRLFLPELIVFGLSLFSHASNTSR 475
BLAST of FC873638 vs. ExPASy Swiss-Prot
Match: LCYB_NARPS (Lycopene beta cyclase, chloroplastic/chromoplastic OS=Narcissus pseudonarcissus GN=LCY1 PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 2.237e-15 Identity = 44/106 (41.51%), Postives = 57/106 (53.77%), Query Frame = 3 Query: 9 APNYASAIAYILKHDHSRGRLTHEQSNENISMQAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRTFFRLPKWMWHGFLGSSLSSADLILFAFYMFIIAPN 326 AP A++I L D S ++S W LWP ER+RQR FF FG+ ++L+LD+EG R FF FF L WHGFL S L +L+ F +F A N Sbjct: 379 APIVANSIVQYLVSDSGL-------SGNDLSADVWKDLWPIERRRQREFFCFGMDILLKLDLEGTRRFFDAFFDLEPRYWHGFLSSRLFLPELVPFGLSLFSHASN 477
BLAST of FC873638 vs. ExPASy Swiss-Prot
Match: LCYB_SOLLC (Lycopene beta cyclase, chloroplastic OS=Solanum lycopersicum GN=LCY1 PE=2 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 3.816e-15 Identity = 45/109 (41.28%), Postives = 57/109 (52.29%), Query Frame = 3 Query: 9 APNYASAIAYILKHDHSRGRLTHEQSNENISMQAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRTFFRLPKWMWHGFLGSSLSSADLILFAFYMFIIAPNDLR 335 AP A+AI L + S S +S W LWP ER+RQR FF FG+ ++L+LD+ R FF FF L WHGFL S L +LI+F +F A N R Sbjct: 376 APVVANAIIQYLGSERSH-------SGNELSTAVWKDLWPIERRRQREFFCFGMDILLKLDLPATRRFFDAFFDLEPRYWHGFLSSRLFLPELIVFGLSLFSHASNTSR 477
BLAST of FC873638 vs. ExPASy Swiss-Prot
Match: LCYB_ARATH (Lycopene beta cyclase, chloroplastic OS=Arabidopsis thaliana GN=LCY1 PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 4.983e-15 Identity = 43/109 (39.45%), Postives = 59/109 (54.13%), Query Frame = 3 Query: 9 APNYASAIAYILKHDHSRGRLTHEQSNENISMQAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRTFFRLPKWMWHGFLGSSLSSADLILFAFYMFIIAPNDLR 335 AP A+AI L S + + +S + W LWP ER+RQR FF FG+ ++L+LD++ R FF FF L WHGFL S L +L++F +F A N R Sbjct: 375 APIVANAIVRYLGSPSS-----NSLRGDQLSAEVWRDLWPIERRRQREFFCFGMDILLKLDLDATRRFFDAFFDLQPHYWHGFLSSRLFLPELLVFGLSLFSHASNTSR 478
BLAST of FC873638 vs. ExPASy Swiss-Prot
Match: LCYB_TOBAC (Lycopene beta cyclase, chloroplastic OS=Nicotiana tabacum GN=LCY1 PE=2 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 4.219e-14 Identity = 43/109 (39.45%), Postives = 56/109 (51.38%), Query Frame = 3 Query: 9 APNYASAIAYILKHDHSRGRLTHEQSNENISMQAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRTFFRLPKWMWHGFLGSSLSSADLILFAFYMFIIAPNDLR 335 AP A+AI + L + + +S W LWP ER+RQR FF FG+ ++L+LD+ R FF FF L WHGFL S L +LI F +F A N R Sbjct: 376 APVVANAIIHYLGSEK-------DLLGNELSAAVWKDLWPIERRRQREFFCFGMDILLKLDLPATRRFFDAFFDLEPRYWHGFLSSRLYLPELIFFGLSLFSRASNTSR 477
BLAST of FC873638 vs. ExPASy Swiss-Prot
Match: CCS_CITSI (Capsanthin/capsorubin synthase, chromoplast OS=Citrus sinensis GN=CCS PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 9.398e-14 Identity = 45/110 (40.91%), Postives = 59/110 (53.64%), Query Frame = 3 Query: 9 APNYASAIAYILKHDHS-RGRLTHEQSNENISMQAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRTFFRLPKWMWHGFLGSSLSSADLILFAFYMFIIAPNDLR 335 AP A AIA L RGR H++ WN LWP +R+ R F+ FG+ +L+LD++G R FF FF L + WHGFL S LS A+L + +F A N R Sbjct: 379 APALADAIAECLGSTRMIRGRPLHQK--------VWNGLWPIDRRCNREFYSFGMETLLKLDLKGTRRFFDAFFDLNPYYWHGFLSSRLSLAELAGLSLSLFGHASNSSR 480
BLAST of FC873638 vs. ExPASy Swiss-Prot
Match: CCS_CAPAN (Capsanthin/capsorubin synthase, chromoplast OS=Capsicum annuum GN=CCS PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 2.315e-12 Identity = 32/74 (43.24%), Postives = 45/74 (60.81%), Query Frame = 3 Query: 105 QAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRTFFRLPKWMWHGFLGSSLSSADLILFAFYMFIIAPN 326 + WN LWP +R+R R + FG+ +L+LD+EG R F FF + WHGFL S LS +L + + Y+F A N Sbjct: 399 RVWNGLWPSDRRRVRECYCFGMETLLKLDLEGTRRLFDAFFDVDPKYWHGFLSSRLSVKELAVLSLYLFGHASN 472
BLAST of FC873638 vs. ExPASy Swiss-Prot
Match: LCYB_SYNE7 (Lycopene beta cyclase OS=Synechococcus elongatus (strain PCC 7942) GN=crtL PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 3.949e-12 Identity = 40/109 (36.70%), Postives = 59/109 (54.13%), Query Frame = 3 Query: 9 APNYASAIAYILKHDHSRGRLTHEQSNENISMQAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRTFFRLPKWMWHGFLGSSLSSADLILFAFYMFIIAPNDLR 335 AP+ A+AIA L S + ++ QAW LWP E+ R+ + FGL +++ + F+TFF LPK W+GFL ++LS +LI +F APND+R Sbjct: 289 APDLANAIAAGLNASSSL-------TTAELATQAWRGLWPTEKIRKHYIYQFGLEKLMRFSEAQLNHHFQTFFGLPKEQWYGFLTNTLSLPELIQAMLRLFAQAPNDVR 390 The following BLAST results are available for this feature:
BLAST of FC873638 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC873638 ID=FC873638; Name=FC873638; organism=Citrus clementina; type=EST; length=573bpback to top |