FC873638

Overview
NameFC873638
Unique NameFC873638
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length573
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10169 contig Ccv1_Contig10169:1..573. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873638 vs. ExPASy Swiss-Prot
Match: LCYE_SOLLC (Lycopene epsilon cyclase, chloroplastic OS=Solanum lycopersicum GN=CRTL-E-1 PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.213e-53
Identity = 103/133 (77.44%), Postives = 116/133 (87.22%), Query Frame = 3
Query:    3 SEAPNYASAIAYILKHDHSRGRLTHEQSNENISMQAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRTFFRLPKWMWHGFLGSSLSSADLILFAFYMFIIAPNDLRKCLIRHLVSDPTGATMVRTYLT 401
            SEAP  AS +A IL+  +S+  LT   S  +IS QAWNTLWPQERKRQR+FFLFGLALILQLDIEGIR+FFR FFR+PKWMW GFLGSSLSSADL+LFAFYMFIIAPND+RK LIRHL+SDPTGAT++RTYLT
Sbjct:  394 SEAPKCASVLANILRQHYSKNMLT-SSSIPSISTQAWNTLWPQERKRQRSFFLFGLALILQLDIEGIRSFFRAFFRVPKWMWQGFLGSSLSSADLMLFAFYMFIIAPNDMRKGLIRHLLSDPTGATLIRTYLT 525          
BLAST of FC873638 vs. ExPASy Swiss-Prot
Match: LCYE_ARATH (Lycopene epsilon cyclase, chloroplastic OS=Arabidopsis thaliana GN=LUT2 PE=1 SV=2)

HSP 1 Score: 197.593 bits (501), Expect = 3.653e-50
Identity = 95/132 (71.97%), Postives = 110/132 (83.33%), Query Frame = 3
Query:    3 SEAPNYASAIAYILKHDHSRGRLTHEQSNENISMQAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRTFFRLPKWMWHGFLGSSLSSADLILFAFYMFIIAPNDLRKCLIRHLVSDPTGATMVRTYL 398
            SEAP YAS IA IL+ +      T +Q N NIS QAW+TLWP ERKRQRAFFLFGLALI+Q D EGIR+FFRTFFRLPKWMW GFLGS+L+S DL+LFA YMF+I+PN+LRK LI HL+SDPTGATM++TYL
Sbjct:  397 SEAPKYASVIAEILREE------TTKQINSNISRQAWDTLWPPERKRQRAFFLFGLALIVQFDTEGIRSFFRTFFRLPKWMWQGFLGSTLTSGDLVLFALYMFVISPNNLRKGLINHLISDPTGATMIKTYL 522          
BLAST of FC873638 vs. ExPASy Swiss-Prot
Match: LCYB_CAPAN (Lycopene beta cyclase, chloroplastic/chromoplastic OS=Capsicum annuum GN=LCY1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.311e-15
Identity = 45/109 (41.28%), Postives = 58/109 (53.21%), Query Frame = 3
Query:    9 APNYASAIAYILKHDHSRGRLTHEQSNENISMQAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRTFFRLPKWMWHGFLGSSLSSADLILFAFYMFIIAPNDLR 335
            AP  A+AI   L  + S        S + +S   W  LWP ER+RQR FF FG+ ++L+LD+   R FF  FF L    WHGFL S L   +LI+F   +F  A N  R
Sbjct:  374 APVVANAIIQYLSSERSH-------SGDELSAAVWKDLWPIERRRQREFFCFGMDILLKLDLPATRRFFDAFFDLEPRYWHGFLSSRLFLPELIVFGLSLFSHASNTSR 475          
BLAST of FC873638 vs. ExPASy Swiss-Prot
Match: LCYB_NARPS (Lycopene beta cyclase, chloroplastic/chromoplastic OS=Narcissus pseudonarcissus GN=LCY1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.237e-15
Identity = 44/106 (41.51%), Postives = 57/106 (53.77%), Query Frame = 3
Query:    9 APNYASAIAYILKHDHSRGRLTHEQSNENISMQAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRTFFRLPKWMWHGFLGSSLSSADLILFAFYMFIIAPN 326
            AP  A++I   L  D          S  ++S   W  LWP ER+RQR FF FG+ ++L+LD+EG R FF  FF L    WHGFL S L   +L+ F   +F  A N
Sbjct:  379 APIVANSIVQYLVSDSGL-------SGNDLSADVWKDLWPIERRRQREFFCFGMDILLKLDLEGTRRFFDAFFDLEPRYWHGFLSSRLFLPELVPFGLSLFSHASN 477          
BLAST of FC873638 vs. ExPASy Swiss-Prot
Match: LCYB_SOLLC (Lycopene beta cyclase, chloroplastic OS=Solanum lycopersicum GN=LCY1 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.816e-15
Identity = 45/109 (41.28%), Postives = 57/109 (52.29%), Query Frame = 3
Query:    9 APNYASAIAYILKHDHSRGRLTHEQSNENISMQAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRTFFRLPKWMWHGFLGSSLSSADLILFAFYMFIIAPNDLR 335
            AP  A+AI   L  + S        S   +S   W  LWP ER+RQR FF FG+ ++L+LD+   R FF  FF L    WHGFL S L   +LI+F   +F  A N  R
Sbjct:  376 APVVANAIIQYLGSERSH-------SGNELSTAVWKDLWPIERRRQREFFCFGMDILLKLDLPATRRFFDAFFDLEPRYWHGFLSSRLFLPELIVFGLSLFSHASNTSR 477          
BLAST of FC873638 vs. ExPASy Swiss-Prot
Match: LCYB_ARATH (Lycopene beta cyclase, chloroplastic OS=Arabidopsis thaliana GN=LCY1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.983e-15
Identity = 43/109 (39.45%), Postives = 59/109 (54.13%), Query Frame = 3
Query:    9 APNYASAIAYILKHDHSRGRLTHEQSNENISMQAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRTFFRLPKWMWHGFLGSSLSSADLILFAFYMFIIAPNDLR 335
            AP  A+AI   L    S     +    + +S + W  LWP ER+RQR FF FG+ ++L+LD++  R FF  FF L    WHGFL S L   +L++F   +F  A N  R
Sbjct:  375 APIVANAIVRYLGSPSS-----NSLRGDQLSAEVWRDLWPIERRRQREFFCFGMDILLKLDLDATRRFFDAFFDLQPHYWHGFLSSRLFLPELLVFGLSLFSHASNTSR 478          
BLAST of FC873638 vs. ExPASy Swiss-Prot
Match: LCYB_TOBAC (Lycopene beta cyclase, chloroplastic OS=Nicotiana tabacum GN=LCY1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.219e-14
Identity = 43/109 (39.45%), Postives = 56/109 (51.38%), Query Frame = 3
Query:    9 APNYASAIAYILKHDHSRGRLTHEQSNENISMQAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRTFFRLPKWMWHGFLGSSLSSADLILFAFYMFIIAPNDLR 335
            AP  A+AI + L  +        +     +S   W  LWP ER+RQR FF FG+ ++L+LD+   R FF  FF L    WHGFL S L   +LI F   +F  A N  R
Sbjct:  376 APVVANAIIHYLGSEK-------DLLGNELSAAVWKDLWPIERRRQREFFCFGMDILLKLDLPATRRFFDAFFDLEPRYWHGFLSSRLYLPELIFFGLSLFSRASNTSR 477          
BLAST of FC873638 vs. ExPASy Swiss-Prot
Match: CCS_CITSI (Capsanthin/capsorubin synthase, chromoplast OS=Citrus sinensis GN=CCS PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.398e-14
Identity = 45/110 (40.91%), Postives = 59/110 (53.64%), Query Frame = 3
Query:    9 APNYASAIAYILKHDHS-RGRLTHEQSNENISMQAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRTFFRLPKWMWHGFLGSSLSSADLILFAFYMFIIAPNDLR 335
            AP  A AIA  L      RGR  H++         WN LWP +R+  R F+ FG+  +L+LD++G R FF  FF L  + WHGFL S LS A+L   +  +F  A N  R
Sbjct:  379 APALADAIAECLGSTRMIRGRPLHQK--------VWNGLWPIDRRCNREFYSFGMETLLKLDLKGTRRFFDAFFDLNPYYWHGFLSSRLSLAELAGLSLSLFGHASNSSR 480          
BLAST of FC873638 vs. ExPASy Swiss-Prot
Match: CCS_CAPAN (Capsanthin/capsorubin synthase, chromoplast OS=Capsicum annuum GN=CCS PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.315e-12
Identity = 32/74 (43.24%), Postives = 45/74 (60.81%), Query Frame = 3
Query:  105 QAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRTFFRLPKWMWHGFLGSSLSSADLILFAFYMFIIAPN 326
            + WN LWP +R+R R  + FG+  +L+LD+EG R  F  FF +    WHGFL S LS  +L + + Y+F  A N
Sbjct:  399 RVWNGLWPSDRRRVRECYCFGMETLLKLDLEGTRRLFDAFFDVDPKYWHGFLSSRLSVKELAVLSLYLFGHASN 472          
BLAST of FC873638 vs. ExPASy Swiss-Prot
Match: LCYB_SYNE7 (Lycopene beta cyclase OS=Synechococcus elongatus (strain PCC 7942) GN=crtL PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.949e-12
Identity = 40/109 (36.70%), Postives = 59/109 (54.13%), Query Frame = 3
Query:    9 APNYASAIAYILKHDHSRGRLTHEQSNENISMQAWNTLWPQERKRQRAFFLFGLALILQLDIEGIRTFFRTFFRLPKWMWHGFLGSSLSSADLILFAFYMFIIAPNDLR 335
            AP+ A+AIA  L    S        +   ++ QAW  LWP E+ R+   + FGL  +++     +   F+TFF LPK  W+GFL ++LS  +LI     +F  APND+R
Sbjct:  289 APDLANAIAAGLNASSSL-------TTAELATQAWRGLWPTEKIRKHYIYQFGLEKLMRFSEAQLNHHFQTFFGLPKEQWYGFLTNTLSLPELIQAMLRLFAQAPNDVR 390          
The following BLAST results are available for this feature:
BLAST of FC873638 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
LCYE_SOLLC1.213e-5377.44Lycopene epsilon cyclase, chloroplastic OS=Solanum... [more]
LCYE_ARATH3.653e-5071.97Lycopene epsilon cyclase, chloroplastic OS=Arabido... [more]
LCYB_CAPAN1.311e-1541.28Lycopene beta cyclase, chloroplastic/chromoplastic... [more]
LCYB_NARPS2.237e-1541.51Lycopene beta cyclase, chloroplastic/chromoplastic... [more]
LCYB_SOLLC3.816e-1541.28Lycopene beta cyclase, chloroplastic OS=Solanum ly... [more]
LCYB_ARATH4.983e-1539.45Lycopene beta cyclase, chloroplastic OS=Arabidopsi... [more]
LCYB_TOBAC4.219e-1439.45Lycopene beta cyclase, chloroplastic OS=Nicotiana ... [more]
CCS_CITSI9.398e-1440.91Capsanthin/capsorubin synthase, chromoplast OS=Cit... [more]
CCS_CAPAN2.315e-1243.24Capsanthin/capsorubin synthase, chromoplast OS=Cap... [more]
LCYB_SYNE73.949e-1236.70Lycopene beta cyclase OS=Synechococcus elongatus (... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI1DE12FM2 AbsDev Citrus clementina cDNA clone KN0AAI1DE12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873638 ID=FC873638; Name=FC873638; organism=Citrus clementina; type=EST; length=573bp
TGTCAGAGGCTCCAAACTATGCTTCTGCAATTGCATATATATTGAAACAC
GATCATTCCAGAGGTAGACTTACACATGAACAAAGTAATGAGAATATCTC
AATGCAAGCTTGGAATACTCTCTGGCCACAGGAAAGGAAGCGCCAAAGAG
CTTTTTTCCTCTTTGGACTAGCACTCATTTTGCAACTGGATATTGAGGGC
ATCAGGACATTCTTTCGCACTTTCTTCCGATTACCCAAGTGGATGTGGCA
CGGTTTCCTTGGTTCTAGTCTCTCATCAGCCGATCTCATTCTATTTGCCT
TCTATATGTTTATTATAGCACCAAATGATCTGAGAAAGTGCCTTATCAGA
CATCTAGTTTCAGATCCAACTGGAGCAACTATGGTAAGAACATACCTGAC
TTTATAGTTAGTTTGTATTTTCCATATTTCAGCCCTTGTTTGGTATATTT
TGGATTGCCATACGTGACACATAATGAGCTTGTATATATACTCCATGTAT
ACTGTAAACTGTTAATTTGACAAATGAAGCCCTTTTTTTATTTTTAAAAA
AAAAAAAAAAAAAAAAAAAAAAA
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