FC873642

Overview
NameFC873642
Unique NameFC873642
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig305 contig Ccv1_Contig305:1021..1760. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873642 vs. ExPASy Swiss-Prot
Match: UPL3_ARATH (E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana GN=UPL3 PE=1 SV=1)

HSP 1 Score: 333.569 bits (854), Expect = 6.922e-91
Identity = 165/190 (86.84%), Postives = 176/190 (92.63%), Query Frame = 3
Query:    6 VDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 575
            VDI NLEEYISLVVDATVK G+ RQ+EAFR+GFNQVFDITSLQIFTP ELD+LLCGRRELWE   LAEHIKFDHGY AKSPAI+NLLEIMGE T DQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSST+ + A+NG G SE+ADDDLPSVMTCANYLKLPPYSTKEIMYKKL+YAI+EGQGSFDLS
Sbjct: 1700 VDITNLEEYISLVVDATVKRGVTRQIEAFRSGFNQVFDITSLQIFTPSELDYLLCGRRELWEVETLAEHIKFDHGYNAKSPAIINLLEIMGELTADQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTS-SAAANGAGASETADDDLPSVMTCANYLKLPPYSTKEIMYKKLLYAINEGQGSFDLS 1888          
BLAST of FC873642 vs. ExPASy Swiss-Prot
Match: UPL4_ARATH (E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana GN=UPL4 PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.655e-58
Identity = 115/190 (60.53%), Postives = 143/190 (75.26%), Query Frame = 3
Query:    6 VDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 575
            V+++NLEEYI  +V+ATV  GI +Q+EAFR+GFNQVF I  L+IF   EL+ +LCG  +L+    + +HIKFDHGYT+ SP +  LL+I+ EF  +QQRAF QFVTG+PRLP GGLA L+PKLTIVRKH              S+S+D DLPSVMTCANYLKLPPYS+KE M +KL+YAI+EGQGSF LS
Sbjct: 1326 VNLDNLEEYIKGIVNATVCNGIQKQVEAFRSGFNQVFSIEHLRIFNEEELETMLCGECDLFSMNEVLDHIKFDHGYTSSSPPVEYLLQILHEFDREQQRAFLQFVTGSPRLPHGGLASLSPKLTIVRKHG-------------SDSSDTDLPSVMTCANYLKLPPYSSKEKMKEKLIYAITEGQGSFHLS 1502          
BLAST of FC873642 vs. ExPASy Swiss-Prot
Match: TRIPC_HUMAN (Probable E3 ubiquitin-protein ligase TRIP12 OS=Homo sapiens GN=TRIP12 PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.861e-44
Identity = 98/191 (51.31%), Postives = 121/191 (63.35%), Query Frame = 3
Query:    6 VDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRR-ELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 575
            V I+NLEEY+ LV+   +  G+ RQ ++FR GF  VF ++ LQ F P ELD LLCG + + W+   L E  + DHGYT  S A+  L EI+  F  +QQR F QFVTG+PRLP GG   LNP LTIVRK   +           +E+ DD LPSVMTC NYLKLP YS+ EIM +KL+ A  EGQ SF LS
Sbjct: 1813 VTIHNLEEYLRLVIFWALNEGVSRQFDSFRDGFESVFPLSHLQYFYPEELDQLLCGSKADTWDAKTLMECCRPDHGYTHDSRAVKFLFEILSSFDNEQQRLFLQFVTGSPRLPVGGFRSLNPPLTIVRKTFES-----------TENPDDFLPSVMTCVNYLKLPDYSSIEIMREKLLIAAREGQQSFHLS 1992          
BLAST of FC873642 vs. ExPASy Swiss-Prot
Match: YDE1_SCHPO (Probable ubiquitin fusion degradation protein C12B10.01c OS=Schizosaccharomyces pombe GN=SPAC12B10.01c PE=2 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 7.263e-40
Identity = 89/186 (47.85%), Postives = 115/186 (61.83%), Query Frame = 3
Query:   18 NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 575
            N+ +Y++ V+D TV  G+ +Q+EAF+ GF+ VF  TSLQ+ T HEL  L     E W  A L + I  DHGYT +SP I  LL +M +    +QR F QF+TG+ +LP GG A LNP LT+VR+ +            P    DD LPSVMTC NYLKLP YS+ E++  +L  AI EGQGSF LS
Sbjct: 1473 NVSDYLNYVIDYTVGKGVQQQLEAFQNGFSSVFPYTSLQVLTEHELVTLFGTVDEDWSYATLMKSIVADHGYTMESPTIQRLLTLMSQMNFQEQRDFLQFITGSRKLPIGGFAGLNPPLTVVRRLNE-----------PPYVPDDYLPSVMTCVNYLKLPEYSSSEVLGSRLSKAILEGQGSFHLS 1647          
BLAST of FC873642 vs. ExPASy Swiss-Prot
Match: UFD4_YEAST (Ubiquitin fusion degradation protein 4 OS=Saccharomyces cerevisiae GN=UFD4 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.188e-35
Identity = 82/191 (42.93%), Postives = 116/191 (60.73%), Query Frame = 3
Query:    3 NVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 575
            +++ +N+EEYI  V+D  +  GI +Q++AF  GF++VF    + I  P EL  +     E W  A L  ++  +HGYT  S  I + + I+  F   ++R F QF+TG+P+LP GG   LNPK T+V KH       A +G     +AD+ LPSVMTCANYLKLP Y++K+IM  +L  AI EG G+F LS
Sbjct: 1304 SLNSSNVEEYIHGVIDQILGKGIEKQLKAFIEGFSKVFSYERMLILFPDELVDIFGRVEEDWSMATLYTNLNAEHGYTMDSSIIHDFISIISAFGKHERRLFLQFLTGSPKLPIGGFKSLNPKFTVVLKH-------AEDGL----TADEYLPSVMTCANYLKLPKYTSKDIMRSRLCQAIEEGAGAFLLS 1483          
BLAST of FC873642 vs. ExPASy Swiss-Prot
Match: HECD1_HUMAN (E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens GN=HECTD1 PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 7.280e-32
Identity = 73/183 (39.89%), Postives = 107/183 (58.47%), Query Frame = 3
Query:    6 VDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRE-LWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISE 551
            + ++N EEY+ L+ D  + TGI +QMEAFR GFN+VF +  L  F+  E+  +LCG +   W    +  + +   GYT  SP  +  + ++   + D+++AF QF TG   LPPGGLA L+P+LT+VRK  +T               D   PSV TC +YLKLP YS++EIM ++L+ A  E
Sbjct: 2439 ITMDNAEEYVDLMFDFCMHTGIQKQMEAFRDGFNKVFPMEKLSSFSHEEVQMILCGNQSPSWAAEDIINYTEPKLGYTRDSPGFLRFVRVLCGMSSDERKAFLQFTTGCSTLPPGGLANLHPRLTVVRKVDAT---------------DASYPSVNTCVHYLKLPEYSSEEIMRERLLAATME 2606          
BLAST of FC873642 vs. ExPASy Swiss-Prot
Match: UBE3A_HUMAN (Ubiquitin-protein ligase E3A OS=Homo sapiens GN=UBE3A PE=1 SV=4)

HSP 1 Score: 100.908 bits (250), Expect = 7.551e-21
Identity = 65/182 (35.71%), Postives = 98/182 (53.85%), Query Frame = 3
Query:   18 NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQ-IFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 560
            N +E+++L  D  +   + +Q +AFR GF+ V + + L+ +F P E++ L+CG R L +  AL E  ++D GYT  S  I    EI+  FT +Q+R F QF TG  R P GGL  L  K+ I +    T                + LP+  TC N L LP YS+KE + ++L+ AI+  +G
Sbjct:  709 NRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNL-DFQALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKL--KMIIAKNGPDT----------------ERLPTSHTCFNVLLLPEYSSKEKLKERLLKAITYAKG 871          
BLAST of FC873642 vs. ExPASy Swiss-Prot
Match: UBE3A_MOUSE (Ubiquitin-protein ligase E3A OS=Mus musculus GN=Ube3a PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.412e-19
Identity = 63/182 (34.62%), Postives = 95/182 (52.20%), Query Frame = 3
Query:   18 NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQ-IFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 560
            N +E++    D  +   + +Q +AFR GF+ V + + L+ +F P E++ L+CG R L +  AL E  ++D GYT +S  I    EI+  FT +Q+R F  F TG  R P GGL  L  K+ I +    T                + LP+  TC N L LP YS+KE +  +L+ AI+  +G
Sbjct:  719 NRKEFVISYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNL-DFQALEETTEYDGGYTRESVVIREFWEIVHSFTDEQKRLFLLFTTGTDRAPVGGLGKL--KMIIAKNGPDT----------------ERLPTSHTCFNVLLLPEYSSKEKLNVRLLKAITYAKG 881          
BLAST of FC873642 vs. ExPASy Swiss-Prot
Match: UPL6_ARATH (E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana GN=UPL6 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.575e-18
Identity = 65/186 (34.95%), Postives = 91/186 (48.92%), Query Frame = 3
Query:   18 NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 575
            N+  +I LV +  +   I +Q   F  GF Q+     + +F  HEL  L+ G  +  +   L  +  +  GY A    I    E+M  F+ + Q+ F +FVTG  R P  G   L P   I R     A  +ASN       + D LP+  TC N LKLPPY +KE++  KL+YAIS  +  FDLS
Sbjct:  856 NVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIPKEWIDMFNEHELQVLISGSVDSLDIDDLRNNTNYAGGYHAGHYVIDMFWEVMKSFSTENQKKFLKFVTGCSRGPLLGFKYLEPAFCIQR-----AAGSASN------ESVDRLPTSATCMNLLKLPPYQSKELLETKLMYAIS-AEAGFDLS 1029          
BLAST of FC873642 vs. ExPASy Swiss-Prot
Match: WWP2_MOUSE (NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Mus musculus GN=Wwp2 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.274e-17
Identity = 64/191 (33.51%), Postives = 88/191 (46.07%), Query Frame = 3
Query:   18 NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRREL----WEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDD------LPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 560
            N EEYI L+ D     G+  Q +AF  GFN+V  +  L+ F   EL+ +LCG +E+    W+  A+  H      YT  S  I    +++ E   +++    QFVTG  RLP GG A L                      GP +   D       LP   TC N L LPPY + E + +KL+YAI E +G
Sbjct:  700 NKEEYIMLLTDWRFTRGVEEQTKAFLDGFNEVAPLEWLRYFDEKELELMLCGMQEIDMSDWQKNAIYRH------YTKSSKQIQWFWQVVKEMDNEKRIRLLQFVTGTCRLPVGGFAEL------------------IGSNGPQKFCIDRVGKETWLPRSHTCFNRLDLPPYKSYEQLKEKLLYAIEETEG 866          
The following BLAST results are available for this feature:
BLAST of FC873642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
UPL3_ARATH6.922e-9186.84E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis th... [more]
UPL4_ARATH2.655e-5860.53E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis th... [more]
TRIPC_HUMAN4.861e-4451.31Probable E3 ubiquitin-protein ligase TRIP12 OS=Hom... [more]
YDE1_SCHPO7.263e-4047.85Probable ubiquitin fusion degradation protein C12B... [more]
UFD4_YEAST9.188e-3542.93Ubiquitin fusion degradation protein 4 OS=Saccharo... [more]
HECD1_HUMAN7.280e-3239.89E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens... [more]
UBE3A_HUMAN7.551e-2135.71Ubiquitin-protein ligase E3A OS=Homo sapiens GN=UB... [more]
UBE3A_MOUSE5.412e-1934.62Ubiquitin-protein ligase E3A OS=Mus musculus GN=Ub... [more]
UPL6_ARATH1.575e-1834.95E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis th... [more]
WWP2_MOUSE2.274e-1733.51NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Mus... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3CB04FM1 AbsDev Citrus clementina cDNA clone KN0AAI3CB04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873642 ID=FC873642; Name=FC873642; organism=Citrus clementina; type=EST; length=740bp
AAAATGTTGACATTAATAACTTGGAGGAATACATATCCTTGGTAGTTGAT
GCCACTGTCAAGACAGGCATCATGCGGCAAATGGAAGCTTTTAGAGCTGG
CTTCAATCAGGTCTTTGACATCACATCATTACAAATATTTACTCCTCATG
AATTGGACCATCTGCTTTGTGGCCGTAGAGAGTTGTGGGAGCCTGCGGCA
CTTGCTGAGCATATAAAATTCGATCATGGATACACTGCCAAGAGTCCTGC
AATTGTTAACTTACTAGAGATCATGGGAGAATTCACACCAGATCAGCAGC
GTGCCTTCTGTCAGTTTGTTACTGGTGCACCTCGTCTTCCACCGGGTGGG
TTGGCGGTGCTGAATCCAAAGCTTACCATTGTCAGAAAGCATTCTTCAAC
TGCACCTAATACAGCATCAAACGGAACCGGGCCTTCGGAATCAGCGGATG
ACGACTTGCCAAGTGTCATGACTTGTGCCAATTACCTGAAGCTTCCTCCT
TACTCTACCAAGGAAATTATGTACAAGAAACTGGTTTATGCAATAAGCGA
AGGGCAGGGATCTTTTGATCTGTCATGAGTTCTCGAAACTAACCGATGGA
CCTTTGTATACTAATATTTGTGTCATCAAGTCAATTCTCTTACCTGGGGA
TTATTCATCTTTGAAAGTAGCATCATATTTCAGTCAAATAATGGCTGCTT
TTCACTGCCCTTGTATCAATGTTCACATCATTGGCAAGTT
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