FC873642
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC873642 vs. ExPASy Swiss-Prot
Match: UPL3_ARATH (E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana GN=UPL3 PE=1 SV=1) HSP 1 Score: 333.569 bits (854), Expect = 6.922e-91 Identity = 165/190 (86.84%), Postives = 176/190 (92.63%), Query Frame = 3 Query: 6 VDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 575 VDI NLEEYISLVVDATVK G+ RQ+EAFR+GFNQVFDITSLQIFTP ELD+LLCGRRELWE LAEHIKFDHGY AKSPAI+NLLEIMGE T DQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSST+ + A+NG G SE+ADDDLPSVMTCANYLKLPPYSTKEIMYKKL+YAI+EGQGSFDLS Sbjct: 1700 VDITNLEEYISLVVDATVKRGVTRQIEAFRSGFNQVFDITSLQIFTPSELDYLLCGRRELWEVETLAEHIKFDHGYNAKSPAIINLLEIMGELTADQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTS-SAAANGAGASETADDDLPSVMTCANYLKLPPYSTKEIMYKKLLYAINEGQGSFDLS 1888
BLAST of FC873642 vs. ExPASy Swiss-Prot
Match: UPL4_ARATH (E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana GN=UPL4 PE=2 SV=1) HSP 1 Score: 225.328 bits (573), Expect = 2.655e-58 Identity = 115/190 (60.53%), Postives = 143/190 (75.26%), Query Frame = 3 Query: 6 VDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 575 V+++NLEEYI +V+ATV GI +Q+EAFR+GFNQVF I L+IF EL+ +LCG +L+ + +HIKFDHGYT+ SP + LL+I+ EF +QQRAF QFVTG+PRLP GGLA L+PKLTIVRKH S+S+D DLPSVMTCANYLKLPPYS+KE M +KL+YAI+EGQGSF LS Sbjct: 1326 VNLDNLEEYIKGIVNATVCNGIQKQVEAFRSGFNQVFSIEHLRIFNEEELETMLCGECDLFSMNEVLDHIKFDHGYTSSSPPVEYLLQILHEFDREQQRAFLQFVTGSPRLPHGGLASLSPKLTIVRKHG-------------SDSSDTDLPSVMTCANYLKLPPYSSKEKMKEKLIYAITEGQGSFHLS 1502
BLAST of FC873642 vs. ExPASy Swiss-Prot
Match: TRIPC_HUMAN (Probable E3 ubiquitin-protein ligase TRIP12 OS=Homo sapiens GN=TRIP12 PE=1 SV=1) HSP 1 Score: 177.948 bits (450), Expect = 4.861e-44 Identity = 98/191 (51.31%), Postives = 121/191 (63.35%), Query Frame = 3 Query: 6 VDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRR-ELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 575 V I+NLEEY+ LV+ + G+ RQ ++FR GF VF ++ LQ F P ELD LLCG + + W+ L E + DHGYT S A+ L EI+ F +QQR F QFVTG+PRLP GG LNP LTIVRK + +E+ DD LPSVMTC NYLKLP YS+ EIM +KL+ A EGQ SF LS Sbjct: 1813 VTIHNLEEYLRLVIFWALNEGVSRQFDSFRDGFESVFPLSHLQYFYPEELDQLLCGSKADTWDAKTLMECCRPDHGYTHDSRAVKFLFEILSSFDNEQQRLFLQFVTGSPRLPVGGFRSLNPPLTIVRKTFES-----------TENPDDFLPSVMTCVNYLKLPDYSSIEIMREKLLIAAREGQQSFHLS 1992
BLAST of FC873642 vs. ExPASy Swiss-Prot
Match: YDE1_SCHPO (Probable ubiquitin fusion degradation protein C12B10.01c OS=Schizosaccharomyces pombe GN=SPAC12B10.01c PE=2 SV=2) HSP 1 Score: 164.081 bits (414), Expect = 7.263e-40 Identity = 89/186 (47.85%), Postives = 115/186 (61.83%), Query Frame = 3 Query: 18 NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 575 N+ +Y++ V+D TV G+ +Q+EAF+ GF+ VF TSLQ+ T HEL L E W A L + I DHGYT +SP I LL +M + +QR F QF+TG+ +LP GG A LNP LT+VR+ + P DD LPSVMTC NYLKLP YS+ E++ +L AI EGQGSF LS Sbjct: 1473 NVSDYLNYVIDYTVGKGVQQQLEAFQNGFSSVFPYTSLQVLTEHELVTLFGTVDEDWSYATLMKSIVADHGYTMESPTIQRLLTLMSQMNFQEQRDFLQFITGSRKLPIGGFAGLNPPLTVVRRLNE-----------PPYVPDDYLPSVMTCVNYLKLPEYSSSEVLGSRLSKAILEGQGSFHLS 1647
BLAST of FC873642 vs. ExPASy Swiss-Prot
Match: UFD4_YEAST (Ubiquitin fusion degradation protein 4 OS=Saccharomyces cerevisiae GN=UFD4 PE=1 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 9.188e-35 Identity = 82/191 (42.93%), Postives = 116/191 (60.73%), Query Frame = 3 Query: 3 NVDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 575 +++ +N+EEYI V+D + GI +Q++AF GF++VF + I P EL + E W A L ++ +HGYT S I + + I+ F ++R F QF+TG+P+LP GG LNPK T+V KH A +G +AD+ LPSVMTCANYLKLP Y++K+IM +L AI EG G+F LS Sbjct: 1304 SLNSSNVEEYIHGVIDQILGKGIEKQLKAFIEGFSKVFSYERMLILFPDELVDIFGRVEEDWSMATLYTNLNAEHGYTMDSSIIHDFISIISAFGKHERRLFLQFLTGSPKLPIGGFKSLNPKFTVVLKH-------AEDGL----TADEYLPSVMTCANYLKLPKYTSKDIMRSRLCQAIEEGAGAFLLS 1483
BLAST of FC873642 vs. ExPASy Swiss-Prot
Match: HECD1_HUMAN (E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens GN=HECTD1 PE=1 SV=2) HSP 1 Score: 137.502 bits (345), Expect = 7.280e-32 Identity = 73/183 (39.89%), Postives = 107/183 (58.47%), Query Frame = 3 Query: 6 VDINNLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRE-LWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISE 551 + ++N EEY+ L+ D + TGI +QMEAFR GFN+VF + L F+ E+ +LCG + W + + + GYT SP + + ++ + D+++AF QF TG LPPGGLA L+P+LT+VRK +T D PSV TC +YLKLP YS++EIM ++L+ A E Sbjct: 2439 ITMDNAEEYVDLMFDFCMHTGIQKQMEAFRDGFNKVFPMEKLSSFSHEEVQMILCGNQSPSWAAEDIINYTEPKLGYTRDSPGFLRFVRVLCGMSSDERKAFLQFTTGCSTLPPGGLANLHPRLTVVRKVDAT---------------DASYPSVNTCVHYLKLPEYSSEEIMRERLLAATME 2606
BLAST of FC873642 vs. ExPASy Swiss-Prot
Match: UBE3A_HUMAN (Ubiquitin-protein ligase E3A OS=Homo sapiens GN=UBE3A PE=1 SV=4) HSP 1 Score: 100.908 bits (250), Expect = 7.551e-21 Identity = 65/182 (35.71%), Postives = 98/182 (53.85%), Query Frame = 3 Query: 18 NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQ-IFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 560 N +E+++L D + + +Q +AFR GF+ V + + L+ +F P E++ L+CG R L + AL E ++D GYT S I EI+ FT +Q+R F QF TG R P GGL L K+ I + T + LP+ TC N L LP YS+KE + ++L+ AI+ +G Sbjct: 709 NRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNL-DFQALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKL--KMIIAKNGPDT----------------ERLPTSHTCFNVLLLPEYSSKEKLKERLLKAITYAKG 871
BLAST of FC873642 vs. ExPASy Swiss-Prot
Match: UBE3A_MOUSE (Ubiquitin-protein ligase E3A OS=Mus musculus GN=Ube3a PE=2 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 5.412e-19 Identity = 63/182 (34.62%), Postives = 95/182 (52.20%), Query Frame = 3 Query: 18 NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQ-IFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 560 N +E++ D + + +Q +AFR GF+ V + + L+ +F P E++ L+CG R L + AL E ++D GYT +S I EI+ FT +Q+R F F TG R P GGL L K+ I + T + LP+ TC N L LP YS+KE + +L+ AI+ +G Sbjct: 719 NRKEFVISYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNL-DFQALEETTEYDGGYTRESVVIREFWEIVHSFTDEQKRLFLLFTTGTDRAPVGGLGKL--KMIIAKNGPDT----------------ERLPTSHTCFNVLLLPEYSSKEKLNVRLLKAITYAKG 881
BLAST of FC873642 vs. ExPASy Swiss-Prot
Match: UPL6_ARATH (E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana GN=UPL6 PE=2 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.575e-18 Identity = 65/186 (34.95%), Postives = 91/186 (48.92%), Query Frame = 3 Query: 18 NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 575 N+ +I LV + + I +Q F GF Q+ + +F HEL L+ G + + L + + GY A I E+M F+ + Q+ F +FVTG R P G L P I R A +ASN + D LP+ TC N LKLPPY +KE++ KL+YAIS + FDLS Sbjct: 856 NVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIPKEWIDMFNEHELQVLISGSVDSLDIDDLRNNTNYAGGYHAGHYVIDMFWEVMKSFSTENQKKFLKFVTGCSRGPLLGFKYLEPAFCIQR-----AAGSASN------ESVDRLPTSATCMNLLKLPPYQSKELLETKLMYAIS-AEAGFDLS 1029
BLAST of FC873642 vs. ExPASy Swiss-Prot
Match: WWP2_MOUSE (NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Mus musculus GN=Wwp2 PE=2 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.274e-17 Identity = 64/191 (33.51%), Postives = 88/191 (46.07%), Query Frame = 3 Query: 18 NLEEYISLVVDATVKTGIMRQMEAFRAGFNQVFDITSLQIFTPHELDHLLCGRREL----WEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDD------LPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 560 N EEYI L+ D G+ Q +AF GFN+V + L+ F EL+ +LCG +E+ W+ A+ H YT S I +++ E +++ QFVTG RLP GG A L GP + D LP TC N L LPPY + E + +KL+YAI E +G Sbjct: 700 NKEEYIMLLTDWRFTRGVEEQTKAFLDGFNEVAPLEWLRYFDEKELELMLCGMQEIDMSDWQKNAIYRH------YTKSSKQIQWFWQVVKEMDNEKRIRLLQFVTGTCRLPVGGFAEL------------------IGSNGPQKFCIDRVGKETWLPRSHTCFNRLDLPPYKSYEQLKEKLLYAIEETEG 866 The following BLAST results are available for this feature:
BLAST of FC873642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 58
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Sequences
The
following sequences are available for this feature:
EST sequence >FC873642 ID=FC873642; Name=FC873642; organism=Citrus clementina; type=EST; length=740bpback to top |