FC873643

Overview
NameFC873643
Unique NameFC873643
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length846
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11093 contig Ccv1_Contig11093:554..1396. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873643 vs. ExPASy Swiss-Prot
Match: SVOP_BOVIN (Synaptic vesicle 2-related protein OS=Bos taurus GN=SVOP PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.822e-24
Identity = 64/168 (38.10%), Postives = 96/168 (57.14%), Query Frame = 3
Query:   48 TTLLLWFLFFGNSFVYYGVILLTSEL-------------NSEEARCGSTLLLLEHAQDASLYVNVFITSLAELPGLLLSAVIVDRVGRKISMAIMSXXXXXXXXXXXXHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVS 512
            TTLLLWF++F N+F YYG++LLT+EL              + EA+C    L  E+  +   Y+++  T+L+E PG+L++  I+DR+GRK +MA+                   + T+LLF AR F +G F  A VY PEVYPT+ RA G G  S + R+G ++ P ++
Sbjct:  316 TTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCS---LACEYLSEED-YMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVVFSFCSLLLFICVGRNMLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIA 479          
BLAST of FC873643 vs. ExPASy Swiss-Prot
Match: SVOP_PONAB (Synaptic vesicle 2-related protein OS=Pongo abelii GN=SVOP PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.380e-24
Identity = 64/168 (38.10%), Postives = 96/168 (57.14%), Query Frame = 3
Query:   48 TTLLLWFLFFGNSFVYYGVILLTSEL-------------NSEEARCGSTLLLLEHAQDASLYVNVFITSLAELPGLLLSAVIVDRVGRKISMAIMSXXXXXXXXXXXXHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVS 512
            TTLLLWF++F N+F YYG++LLT+EL              + EA+C    L  E+  +   Y+++  T+L+E PG+L++  I+DR+GRK +MA+                   + T+LLF AR F +G F  A VY PEVYPT+ RA G G  S + R+G ++ P ++
Sbjct:  316 TTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCGISSRKKAVEAKCS---LACEYLSEED-YMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLLLFICVGRNVLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIA 479          
BLAST of FC873643 vs. ExPASy Swiss-Prot
Match: SVOP_HUMAN (Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.380e-24
Identity = 64/168 (38.10%), Postives = 96/168 (57.14%), Query Frame = 3
Query:   48 TTLLLWFLFFGNSFVYYGVILLTSEL-------------NSEEARCGSTLLLLEHAQDASLYVNVFITSLAELPGLLLSAVIVDRVGRKISMAIMSXXXXXXXXXXXXHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVS 512
            TTLLLWF++F N+F YYG++LLT+EL              + EA+C    L  E+  +   Y+++  T+L+E PG+L++  I+DR+GRK +MA+                   + T+LLF AR F +G F  A VY PEVYPT+ RA G G  S + R+G ++ P ++
Sbjct:  316 TTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCGISSRKKAVEAKCS---LACEYLSEED-YMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLLLFICVGRNVLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIA 479          
BLAST of FC873643 vs. ExPASy Swiss-Prot
Match: SVOP_XENLA (Synaptic vesicle 2-related protein OS=Xenopus laevis GN=svop PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.060e-24
Identity = 66/165 (40.00%), Postives = 91/165 (55.15%), Query Frame = 3
Query:   48 TTLLLWFLFFGNSFVYYGVILLTSEL----------NSEEARCGSTLLLLEHAQDASLYVNVFITSLAELPGLLLSAVIVDRVGRKISMAIMSXXXXXXXXXXXXHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVS 512
            TTLLLWF++F N+F YYG++LLT+EL          N  +A      L  E+      Y ++  T+L+E PGLL++  I+DRVGRK +MAI                   + TV LF AR F +G F  A VY PEVYPT+ RA G G  S + R+G ++ P ++
Sbjct:  316 TTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISNQRKAVKPKCSLACEYLTVED-YTDLLWTTLSEFPGLLVTLWIIDRVGRKKTMAICFIIFSFSALLLFLCVGRNVLTVFLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIA 479          
BLAST of FC873643 vs. ExPASy Swiss-Prot
Match: SVOP_RAT (Synaptic vesicle 2-related protein OS=Rattus norvegicus GN=Svop PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.045e-24
Identity = 62/168 (36.90%), Postives = 93/168 (55.36%), Query Frame = 3
Query:   48 TTLLLWFLFFGNSFVYYGVILLTSEL-------------NSEEARCGSTLLLLEHAQDASLYVNVFITSLAELPGLLLSAVIVDRVGRKISMAIMSXXXXXXXXXXXXHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVS 512
            TTLLLWF++F N+F YYG++LLT+EL              + EA+C      L        Y+++  T+L+E PG+L++  ++DR+GRK +MA+                   + T+LLF AR F +G F  A VY PEVYPT+ RA G G  S + R+G ++ P ++
Sbjct:  316 TTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEYLSKED----YMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFVIFSLCSLLLFICIGRNVLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIA 479          
BLAST of FC873643 vs. ExPASy Swiss-Prot
Match: SVOP_MOUSE (Synaptic vesicle 2-related protein OS=Mus musculus GN=Svop PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.045e-24
Identity = 62/168 (36.90%), Postives = 93/168 (55.36%), Query Frame = 3
Query:   48 TTLLLWFLFFGNSFVYYGVILLTSEL-------------NSEEARCGSTLLLLEHAQDASLYVNVFITSLAELPGLLLSAVIVDRVGRKISMAIMSXXXXXXXXXXXXHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVS 512
            TTLLLWF++F N+F YYG++LLT+EL              + EA+C      L        Y+++  T+L+E PG+L++  ++DR+GRK +MA+                   + T+LLF AR F +G F  A VY PEVYPT+ RA G G  S + R+G ++ P ++
Sbjct:  316 TTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEYLSKED----YMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFIIFSLCSLLLFICIGRNVLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIA 479          
BLAST of FC873643 vs. ExPASy Swiss-Prot
Match: YOU1_CAEEL (Putative transporter ZK637.1 OS=Caenorhabditis elegans GN=ZK637.1 PE=3 SV=5)

HSP 1 Score: 102.064 bits (253), Expect = 4.201e-21
Identity = 61/162 (37.65%), Postives = 88/162 (54.32%), Query Frame = 3
Query:   45 RTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLL----LEHAQDA--SLYVNVFITSLAELPGLLLSAVIVDRVGRKISMAIMSXXXXXXXXXXXXHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVS 512
            +TT+LLW ++   +F YYG++L T+ L      C   L      +E  Q    S Y ++  T+LAE PGL+++ +I++  GRK +MA+                     TVL+F AR F +G F  A VY PEVYPT+LRA G G  SA+ RIG +V P ++
Sbjct:  317 KTTILLWCIWAITAFSYYGMVLFTTVLFQSHDECHGGLFSNGTQMEVCQPLTRSDYFDLLSTTLAEFPGLIITVLIIEWFGRKKTMALEYAVFAIFTFLLYFCLDRFTVTVLIFVARAFISGAFQCAYVYTPEVYPTTLRAVGLGTCSAMARIGAIVTPFIA 478          
BLAST of FC873643 vs. ExPASy Swiss-Prot
Match: SVOPL_DANRE (Putative transporter SVOPL OS=Danio rerio GN=svopl PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.158e-17
Identity = 57/174 (32.76%), Postives = 91/174 (52.30%), Query Frame = 3
Query:   45 RTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTLLL---LEHAQDASL----------YVNVFITSLAELPGLLLSAVIVDRVGRKISMAIMSXXXXXXXXXXXXHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVT 527
            RT+LLLW+ +F  SF YYG +L +SEL  +   C +   L   ++H Q+ +L          Y  + I+ L E+  + L+ ++++ VGRK SM I+                +   T+LLF  R   +  F V  +Y  EVYPTS+R+ G G  ++  RIGGM+ P ++  L++
Sbjct:  296 RTSLLLWYSWFVASFSYYGSVLSSSELLEKNLLCVTDPDLEHQIKHIQEETLCYCIPFNSDDYQTLLISCLGEVALIPLNIILLNIVGRKYSMVILLLLSAFFFMLVNICTTMLGFTILLFLLRSVVSMNFNVVYIYTAEVYPTSVRSIGMGFCTSFSRIGGMIAPFIAQVLMS 469          
BLAST of FC873643 vs. ExPASy Swiss-Prot
Match: SVOPL_HUMAN (Putative transporter SVOPL OS=Homo sapiens GN=SVOPL PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 5.500e-13
Identity = 51/178 (28.65%), Postives = 85/178 (47.75%), Query Frame = 3
Query:   42 IRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGS---TLLLLE-------------HAQDASLYVNVFITSLAELPGLLLSAVIVDRVGRKISMAIMSXXXXXXXXXXXXHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVT 527
            +RTTL +W ++ G SF YYGVIL ++EL   +  CGS   + +++              H    S Y  + I+++ E+    L+ + ++ +GR++S++I                        LF  R      F    +Y  EVYPT++RA G G + ++ RIG MV P +S  L++
Sbjct:  278 LRTTLQIWVIWLGISFAYYGVILASAELLERDLVCGSKSDSAVVVTGGDSGESQSPCYCHMFAPSDYRTMIISTIGEIALNPLNILGINFLGRRLSLSITMGCTALFFLLLNICTSSAGLIGFLFMLRALVAANFNTVYIYTAEVYPTTMRALGMGTSGSLCRIGAMVAPFISQVLMS 455          
BLAST of FC873643 vs. ExPASy Swiss-Prot
Match: SVOPL_MOUSE (Putative transporter SVOPL OS=Mus musculus GN=Svopl PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.183e-13
Identity = 53/180 (29.44%), Postives = 84/180 (46.67%), Query Frame = 3
Query:   42 IRTTLLLWFLFFGNSFVYYGVILLTSELNSEEARCGSTL----LLLEHAQDA--------------SLYVNVFITSLAELPGLLLSAVIVDRVGRKISMAIMSXXXXXXXXXXXXHQPVTLTTVLLFGARMFANGTFAVACVYAPEVYPTSLRATGAGIASAVGRIGGMVCPLVSVGLVT 527
            +RTTL +W ++ G SF YYGVIL ++EL   +  CGS       ++E   D+              S Y  + I++L E+    L+ + ++ +GR++S++I                        LF  R      F    +Y  EVYPT +RA G G + ++ RIG MV P +S  L++
Sbjct:  278 LRTTLQIWIIWLGISFAYYGVILASAELLERDLVCGSKSESEPEVVETTGDSGEGLSPCYCHIFAPSDYRTMIISTLGEIALNPLNILGINFLGRRLSLSITMGCTALFFLLLNICTSSAGLIGFLFMLRALVAANFNTIYIYTAEVYPTPMRAIGMGTSGSLCRIGAMVAPFISQVLMS 457          
The following BLAST results are available for this feature:
BLAST of FC873643 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
SVOP_BOVIN1.822e-2438.10Synaptic vesicle 2-related protein OS=Bos taurus G... [more]
SVOP_PONAB2.380e-2438.10Synaptic vesicle 2-related protein OS=Pongo abelii... [more]
SVOP_HUMAN2.380e-2438.10Synaptic vesicle 2-related protein OS=Homo sapiens... [more]
SVOP_XENLA4.060e-2440.00Synaptic vesicle 2-related protein OS=Xenopus laev... [more]
SVOP_RAT9.045e-2436.90Synaptic vesicle 2-related protein OS=Rattus norve... [more]
SVOP_MOUSE9.045e-2436.90Synaptic vesicle 2-related protein OS=Mus musculus... [more]
YOU1_CAEEL4.201e-2137.65Putative transporter ZK637.1 OS=Caenorhabditis ele... [more]
SVOPL_DANRE2.158e-1732.76Putative transporter SVOPL OS=Danio rerio GN=svopl... [more]
SVOPL_HUMAN5.500e-1328.65Putative transporter SVOPL OS=Homo sapiens GN=SVOP... [more]
SVOPL_MOUSE7.183e-1329.44Putative transporter SVOPL OS=Mus musculus GN=Svop... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3CB05FM1 AbsDev Citrus clementina cDNA clone KN0AAI3CB05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873643 ID=FC873643; Name=FC873643; organism=Citrus clementina; type=EST; length=846bp
CAGGATCCTCATCTTTTCTCATGCTGTTGTCATCAGAATTAATCAGAACT
ACCCTTCTGTTATGGTTTCTCTTCTTTGGAAATTCATTCGTATATTATGG
GGTTATATTGTTGACATCAGAATTAAATAGTGAGGAAGCCAGATGTGGCT
CAACTCTCTTGCTTTTGGAACATGCCCAGGATGCCAGCCTATACGTTAAT
GTATTTATCACTAGCTTGGCAGAACTTCCCGGGCTTCTGTTATCAGCAGT
GATTGTGGACAGAGTTGGACGCAAGATTTCCATGGCAATTATGTCCATTT
TGACTTTCATATTTCTTCTTCCACTGCTTATCCATCAACCTGTTACTTTA
ACAACAGTATTATTATTTGGAGCTCGAATGTTTGCCAATGGGACCTTTGC
CGTTGCTTGCGTGTATGCACCAGAGGTGTATCCAACCTCACTGAGGGCAA
CTGGTGCCGGCATTGCAAGTGCAGTGGGACGAATTGGGGGCATGGTGTGC
CCTCTAGTATCCGTTGGATTGGTGACCGGTTGCCATCAGACGGCTGCCAT
CTTTCTCTTGGCGGTTGTGATTGTTCTCTCAATAGTTTGCATACTTCTCT
TCCCATTTGAAACCAAGGGCAAAAGGATTGACTGACACCGTTGCTGTTGT
ATTCAATATGGTTTCAAGGGAAAAAAAAAAAAAAAAATCATTAATTTGCA
AACAGTTGTTCGTCTTCAGTCGATGCAGCGAGTCATTGGCTACTTTAACT
TAGAGCATGTGCCATTCTGTGGACAGGTGGGCAGGCGCTCTGCACATGCC
CGCGATCCCGATTATTTCATTTCTATAATAAGTGATACATGGATTT
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