FC873721

Overview
NameFC873721
Unique NameFC873721
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length886
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10176 contig Ccv1_Contig10176:1..886. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873721 vs. ExPASy Swiss-Prot
Match: RBD2A_ARATH (Ras-related protein RABD2A OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3)

HSP 1 Score: 382.489 bits (981), Expect = 1.737e-105
Identity = 186/203 (91.63%), Postives = 198/203 (97.54%), Query Frame = 3
Query:  126 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCCST 734
            MNPEYDYLFKLLLIGDSGVGKSCLLLRF+DDSY+ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTD+ESFNNVKQWL+EIDRYASDNVNKLLVGNK DLT N+ + YETAKAFADEIGIPFMETSAKD+TNVEQAFMAM+ASIK+RMASQP+ NNARPPTVQI+GQPVAQK+GCCST
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKSDLTENRAIPYETAKAFADEIGIPFMETSAKDATNVEQAFMAMSASIKERMASQPAGNNARPPTVQIRGQPVAQKNGCCST 203          
BLAST of FC873721 vs. ExPASy Swiss-Prot
Match: YPTM2_MAIZE (GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 4.731e-103
Identity = 185/203 (91.13%), Postives = 196/203 (96.55%), Query Frame = 3
Query:  126 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCCST 734
            MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSY++SYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNK DLTANKVV+ ETAKAFADE+GIPFMETSAK++TNV+QAFMAMAASIKDRMASQP+  NARP TVQI+GQPV QK+ CCS+
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKSDLTANKVVATETAKAFADEMGIPFMETSAKNATNVQQAFMAMAASIKDRMASQPAAANARPATVQIRGQPVNQKTSCCSS 203          
BLAST of FC873721 vs. ExPASy Swiss-Prot
Match: RIC1_ORYSJ (Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2)

HSP 1 Score: 364.385 bits (934), Expect = 4.896e-100
Identity = 176/202 (87.13%), Postives = 190/202 (94.06%), Query Frame = 3
Query:  126 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCCS 731
            MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSY+ESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWLNEIDRYAS+NVNKLLVGNKCDL  N+VVSYE  KA ADEIGIPF+ETSAKD+TNVE+AFM MA  IK+RMASQP+ N ++P TVQ++GQPVAQ+S CCS
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLAENRVVSYEAGKALADEIGIPFLETSAKDATNVEKAFMTMAGEIKNRMASQPATNASKPATVQMRGQPVAQQSSCCS 202          
BLAST of FC873721 vs. ExPASy Swiss-Prot
Match: YPTC1_CHLRE (GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1 PE=3 SV=1)

HSP 1 Score: 332.798 bits (852), Expect = 1.579e-90
Identity = 167/202 (82.67%), Postives = 179/202 (88.61%), Query Frame = 3
Query:  126 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQ-IKGQPVAQKSGCC 728
            MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRTVE DGK IKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWLNEIDRYAS+NVNKLLVGNK DLT+ KVV Y  AKAFADEIGIPF+ETSAK++TNVEQAFM MAA IK+RMASQP    A  P V+  +G+P+  KS  C
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKSDLTSKKVVEYSVAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMASQPIPTKAGGPVVRPQEGKPINSKSSSC 202          
BLAST of FC873721 vs. ExPASy Swiss-Prot
Match: YPTV1_VOLCA (GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 3.889e-89
Identity = 165/202 (81.68%), Postives = 177/202 (87.62%), Query Frame = 3
Query:  126 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQ-IKGQPVAQKSGCC 728
            MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRTVE DGK IKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVGNK DLT  KVV Y+ AKAFADEIGIPF+ETSAK++TNVEQAFM MAA IK+RMASQP       P V+  +G+P+  KS  C
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLAEIDRYASENVNKLLVGNKSDLTGKKVVDYQAAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMASQPVPPKPGGPVVRPTEGKPINNKSSSC 202          
BLAST of FC873721 vs. ExPASy Swiss-Prot
Match: RAB1A_RAT (Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 326.635 bits (836), Expect = 1.131e-88
Identity = 160/203 (78.82%), Postives = 174/203 (85.71%), Query Frame = 3
Query:  120 TTMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCC 728
            ++MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVGNKCDLT  KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM    +   A    V+I+  PV Q  G C
Sbjct:    2 SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGGGC 204          
BLAST of FC873721 vs. ExPASy Swiss-Prot
Match: RAB1A_MOUSE (Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 326.635 bits (836), Expect = 1.131e-88
Identity = 160/203 (78.82%), Postives = 174/203 (85.71%), Query Frame = 3
Query:  120 TTMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCC 728
            ++MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVGNKCDLT  KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM    +   A    V+I+  PV Q  G C
Sbjct:    2 SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGGGC 204          
BLAST of FC873721 vs. ExPASy Swiss-Prot
Match: RAB1A_HUMAN (Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3)

HSP 1 Score: 326.635 bits (836), Expect = 1.131e-88
Identity = 160/203 (78.82%), Postives = 174/203 (85.71%), Query Frame = 3
Query:  120 TTMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCC 728
            ++MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVGNKCDLT  KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM    +   A    V+I+  PV Q  G C
Sbjct:    2 SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGGGC 204          
BLAST of FC873721 vs. ExPASy Swiss-Prot
Match: RAB1A_CANFA (Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3)

HSP 1 Score: 326.635 bits (836), Expect = 1.131e-88
Identity = 160/203 (78.82%), Postives = 174/203 (85.71%), Query Frame = 3
Query:  120 TTMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCC 728
            ++MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVGNKCDLT  KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM    +   A    V+I+  PV Q  G C
Sbjct:    2 SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGGGC 204          
BLAST of FC873721 vs. ExPASy Swiss-Prot
Match: RAB1A_PIG (Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3)

HSP 1 Score: 323.939 bits (829), Expect = 7.333e-88
Identity = 159/203 (78.33%), Postives = 173/203 (85.22%), Query Frame = 3
Query:  120 TTMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCC 728
            ++MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y ESYISTIGVDFKIRT+E DGKTIKLQIWDTAGQERFRTITSSYYRGAHGII+VYDVTDQ SFNNVKQWL EIDRYAS+NVNKLLVGNKCDLT  KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM    +   A    V+I+  PV Q  G C
Sbjct:    2 SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQGSFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTPVKQSGGGC 204          
The following BLAST results are available for this feature:
BLAST of FC873721 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RBD2A_ARATH1.737e-10591.63Ras-related protein RABD2A OS=Arabidopsis thaliana... [more]
YPTM2_MAIZE4.731e-10391.13GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=... [more]
RIC1_ORYSJ4.896e-10087.13Ras-related protein RIC1 OS=Oryza sativa subsp. ja... [more]
YPTC1_CHLRE1.579e-9082.67GTP-binding protein YPTC1 OS=Chlamydomonas reinhar... [more]
YPTV1_VOLCA3.889e-8981.68GTP-binding protein yptV1 OS=Volvox carteri GN=YPT... [more]
RAB1A_RAT1.131e-8878.82Ras-related protein Rab-1A OS=Rattus norvegicus GN... [more]
RAB1A_MOUSE1.131e-8878.82Ras-related protein Rab-1A OS=Mus musculus GN=Rab1... [more]
RAB1A_HUMAN1.131e-8878.82Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1... [more]
RAB1A_CANFA1.131e-8878.82Ras-related protein Rab-1A OS=Canis familiaris GN=... [more]
RAB1A_PIG7.333e-8878.33Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3CG11FM1 AbsDev Citrus clementina cDNA clone KN0AAI3CG11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873721 ID=FC873721; Name=FC873721; organism=Citrus clementina; type=EST; length=886bp
TGTCTTCTGTTTTTGTTGACATTTAATTTCCCGGCGAAACTCATATCACG
AGATCTCGCCGAAGATAATAATCTGTTTTGGTTAACCGAACCCGAAGCTT
TTTTCTTTTACACAAATCTACGACGATGAATCCTGAATATGACTATCTGT
TTAAGCTTCTGCTTATTGGAGATTCCGGTGTTGGCAAATCTTGTCTTCTC
TTGAGATTTGCTGATGATTCATATATTGAGAGTTACATCAGCACCATAGG
AGTTGATTTTAAAATACGCACTGTTGAGCAAGATGGGAAGACCATTAAAC
TTCAAATTTGGGATACTGCTGGTCAAGAAAGATTTAGGACAATCACCAGC
AGCTACTACCGTGGGGCACATGGTATCATAATTGTTTATGATGTGACAGA
CCAAGAGAGCTTCAATAATGTCAAGCAGTGGTTGAATGAAATTGACCGTT
ATGCTAGTGATAATGTCAACAAACTTCTGGTTGGAAACAAGTGTGATCTC
ACTGCAAATAAGGTTGTCTCGTACGAAACAGCCAAGGCATTTGCAGATGA
AATTGGAATACCTTTCATGGAAACTAGTGCAAAAGATTCTACCAACGTGG
AACAGGCATTCATGGCCATGGCTGCTTCAATCAAGGATAGAATGGCAAGT
CAACCATCCATGAACAATGCAAGGCCTCCAACTGTACAGATCAAAGGGCA
GCCTGTTGCACAGAAGAGTGGCTGCTGCTCTACTTAAGTATCATTGACCA
ACACTCAGAAGATGATCCCCCTTCAGTCCCTTTGTGGTTTATGAAAAAGG
CTGTACAAAGTAGAAATGCTAATTTGATGTTAGTATTCTTCTTTCTGTCC
CTATCTTTATTGGGAATTGGCCTTAATAGCATGTTT
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