FC873732

Overview
NameFC873732
Unique NameFC873732
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length789
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10177 contig Ccv1_Contig10177:1..789. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873732 vs. ExPASy Swiss-Prot
Match: YGI3_SCHPO (Uncharacterized WD repeat-containing protein C2A9.03 OS=Schizosaccharomyces pombe GN=SPBC2A9.03 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 4.481e-14
Identity = 63/241 (26.14%), Postives = 108/241 (44.81%), Query Frame = 1
Query:   40 HFQLRNLLWATSKHDVYLMQNYSLMHWSSLLRRGKEVLNVAKPIVPTIKRPGLSAQSLNRVQISTMAVKDNLMVAGGFHGELICKYLDQPGVAFCTNLTTDDNAITNTVDVFRSPNGSKRVIAANNDAKVRIFDAENFSCLNRFSYDWSVNNTSVSPDGKLLAVLGDSTECLIADAQSGKVTGNLKGHLDYSFASAWHPDGRILASGNQDTTCRLWDIRNLSQSLTVLKGNMGAIRALKFT 762
            H  L   +    +H V  + N S+   ++L     +++++   I             L +  IS +   + +   G  +G+  C +  + G +F T   +DD+   N + +F      K+ I   ND  V + D +  S +  +    +VN   +  +  L  V  DS + ++ D +S  V+  L  H D     +WHP+G ILA+G QDTT ++WDIR L +S   L   M A+  L F+
Sbjct:  134 HHHLCKSVKVVGEHSVIYVSNNSIRMENTLHDNSVQIIDLKNNI-------------LQKKAISCLDTTNAVGCLGTLYGQY-CIFNFKNG-SFSTRKLSDDSI--NHIQLF----SEKKFILGCNDGAVYVEDVQRTSPILVYRCSNAVNCVQLFDETPLALVCTDSKDAMLIDIRSNSVSAKLP-HSDSVLTGSWHPNGNILATGGQDTTAKVWDIRALGKSFRNLGSQMSAVTNLCFS 352          
BLAST of FC873732 vs. ExPASy Swiss-Prot
Match: YY46_ANASP (Uncharacterized WD repeat-containing protein alr3466 OS=Anabaena sp. (strain PCC 7120) GN=alr3466 PE=4 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.081e-11
Identity = 43/136 (31.62%), Postives = 75/136 (55.15%), Query Frame = 1
Query:  379 SPNGSKRVIAANNDAKVRIFDAENFSCLNRFSYDWS-VNNTSVSPDGKLLAVLGDSTECLIADAQSGKVTGNLKGHLDYSFASAWHPDGRILASGNQDTTCRLWDIRNLSQSLTVLKGNMGAIRALKFTSDRPVLA 783
            +P+GS  + + ++D  VR+++  +  CL  F    S VN+   +PDG +LA         + D  S K     +GH ++  + A++PDG +LASG+ D T RLW+I + S+ L   +G+   + ++ F+ D  +LA
Sbjct: 1209 NPDGST-LASGSSDQTVRLWEINSSKCLCTFQGHTSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSKCLHTFQGHTNWVNSVAFNPDGSMLASGSGDQTVRLWEISS-SKCLHTFQGHTSWVSSVTFSPDGTMLA 1342          

HSP 2 Score: 68.5514 bits (166), Expect = 4.637e-11
Identity = 41/131 (31.30%), Postives = 71/131 (54.20%), Query Frame = 1
Query:  394 KRVIAANNDAKVRIFDAENFSCLNRFSYDWS-VNNTSVSPDGKLLAVLGDSTECLIADAQSGKVTGNLKGHLDYSFASAWHPDGRILASGNQDTTCRLWDIRNLSQSLTVLKGNMGAIRALKFTSDRPVLA 783
            K + + ++D  VR++D  +  CL  F    S V +   SP+  +LA         + D  SG+     +GH  + ++ A++ DG +LA+G+ D T RLWDI + SQ   + +G+   +R++ F+SD  +LA
Sbjct:  919 KMLASGSDDQTVRLWDISSGQCLKTFKGHTSRVRSVVFSPNSLMLASGSSDQTVRLWDISSGECLYIFQGHTGWVYSVAFNLDGSMLATGSGDQTVRLWDISS-SQCFYIFQGHTSCVRSVVFSSDGAMLA 1048          
BLAST of FC873732 vs. ExPASy Swiss-Prot
Match: Y2124_ANASP (Uncharacterized WD repeat-containing protein all2124 OS=Anabaena sp. (strain PCC 7120) GN=all2124 PE=4 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.550e-11
Identity = 68/262 (25.95%), Postives = 119/262 (45.42%), Query Frame = 1
Query:   46 QLRNLLWATSKHDVYLMQNYSLMHWSSLLRRGKEVLNV-AKP------IVPTIKRPGLSAQSLNRVQ------ISTMAVKDNLMVAGGFHGELICKYLDQPGVAFCTNLTTDDNAITNTVDVFRSPNGSKRVIAANNDAKVRIFDAENFSCLNRFS-YDWSVNNTSVSPDGKLLAVLGDSTECLIADAQSGKVTGNLKGHLDYSFASAWHPDGRILASGNQDTTCRLWDIRNLSQSLTVLKGNMGAIRALKFTSDRPVLAMA 789
            Q R +    S     L+ +  L    + L+  ++V +V A P       V T+++     Q  NR++      IS    +D   +A G   + I K   + G  F T L   ++A+ +   V  SP+G + + +  +D  ++++   + + L   + ++ +VNN   SPDGK LA         + D  SG++   L GH        + PDG+ +A+G++D T +LW  R   + L  L G+   + +L F+ D   LA A
Sbjct: 1003 QFREIAALNSSSQANLLSHQQLAALIASLKAAQQVNHVIAVPNNLKLATVTTLQQALFEMQERNRLEGHKDGVISISISRDGQTIASGSLDKTI-KLWSRDGRLFRT-LNGHEDAVYS---VSFSPDG-QTIASGGSDKTIKLWQTSDGTLLKTITGHEQTVNNVYFSPDGKNLASASSDHSIKLWDTTSGQLLMTLTGHSAGVITVRFSPDGQTIAAGSEDKTVKLWH-RQDGKLLKTLNGHQDWVNSLSFSPDGKTLASA 1257          

HSP 2 Score: 67.781 bits (164), Expect = 7.909e-11
Identity = 54/205 (26.34%), Postives = 99/205 (48.29%), Query Frame = 1
Query:  187 RPGLSAQSLNRVQISTMAVK---DNLMVAGGFHGELICKYLDQPGVAFCTNLTTDDNAITNTVDVFRSPNGSKRVIAANNDAKVRIFDAENFSCLNRFS-YDWSVNNTSVSPDGKLLAVLGDSTECLIADAQSGKVTGNLKGHLDYSFASAWHPDGRILASGNQDTTCRLWDIRNLSQSLTVLKGNMGAIRALKFTSDRPVLAMA 789
            R G   ++LN  + +  +V    D   +A G   + I  +    G    T +T  +  + N   V+ SP+G K + +A++D  ++++D  +   L   + +   V     SPDG+ +A   +     +   Q GK+   L GH D+  + ++ PDG+ LAS + D T +LW I +  + +  LKG+  ++  + F+SD   +A A
Sbjct: 1101 RDGRLFRTLNGHEDAVYSVSFSPDGQTIASGGSDKTIKLWQTSDGTLLKT-ITGHEQTVNN---VYFSPDG-KNLASASSDHSIKLWDTTSGQLLMTLTGHSAGVITVRFSPDGQTIAAGSEDKTVKLWHRQDGKLLKTLNGHQDWVNSLSFSPDGKTLASASADKTIKLWRIAD-GKLVKTLKGHNDSVWDVNFSSDGKAIASA 1299          
BLAST of FC873732 vs. ExPASy Swiss-Prot
Match: YQ95_SCHPO (Uncharacterized WD repeat-containing protein C18.05c OS=Schizosaccharomyces pombe GN=SPCC18.05c PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.637e-11
Identity = 35/127 (27.56%), Postives = 69/127 (54.33%), Query Frame = 1
Query:  394 KRVIAANNDAKVRIFDAENFS--CLNRFSYDWSVNNTSVSPDGKLLAVLGDSTECLIADAQSGKVTGNLKGHLDYSFASAWHPDGRILASGNQDTTCRLWDIRNLSQSLTVLKGNMGAIRALKFTSD 768
            +R+++A++D ++ ++D +  +        +   VN+ S SPDG+ +A     +   + D ++GK    L+GH+   +  AW  D R+L S +QDTT ++WD+R+       L G+   + A+ ++ D
Sbjct:  359 ERLVSASDDLQLILWDPQKSTKPITKMHGHQKVVNHASFSPDGRCIATASFDSSVRLWDGKTGKFLATLRGHVAAVYQCAWSTDSRLLVSSSQDTTLKVWDVRSKKMKFD-LPGHEDQVFAVDWSPD 484          
The following BLAST results are available for this feature:
BLAST of FC873732 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
YGI3_SCHPO4.481e-1426.14Uncharacterized WD repeat-containing protein C2A9.... [more]
YY46_ANASP2.081e-1131.62Uncharacterized WD repeat-containing protein alr34... [more]
Y2124_ANASP3.550e-1125.95Uncharacterized WD repeat-containing protein all21... [more]
YQ95_SCHPO4.637e-1127.56Uncharacterized WD repeat-containing protein C18.0... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI3CH10FM1 AbsDev Citrus clementina cDNA clone KN0AAI3CH10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873732 ID=FC873732; Name=FC873732; organism=Citrus clementina; type=EST; length=789bp
TTTCAGTTTAACATAAGGCTTGTCAAATCGACAATTGTGCATTTTCAGTT
AAGGAATTTGTTATGGGCAACATCAAAGCATGATGTGTATCTGATGCAGA
ATTATTCTCTAATGCATTGGTCTTCATTGCTCCGTAGAGGCAAAGAAGTG
CTCAACGTGGCAAAGCCAATTGTTCCCACCATAAAACGCCCTGGTTTGTC
AGCTCAGTCTCTGAATAGAGTGCAAATAAGCACTATGGCAGTTAAAGATA
ATCTGATGGTGGCTGGTGGTTTTCATGGGGAGCTTATCTGCAAGTACTTA
GATCAACCTGGGGTTGCTTTCTGCACAAATTTAACAACAGATGATAATGC
CATCACCAATACAGTGGATGTGTTCCGGAGCCCTAATGGCTCGAAGAGGG
TCATAGCAGCAAACAATGATGCCAAAGTTAGAATATTTGACGCTGAAAAT
TTCAGTTGCCTTAATCGCTTCTCATATGATTGGTCTGTGAATAATACCTC
TGTTAGTCCAGATGGGAAGTTGCTTGCAGTACTTGGGGACAGCACAGAGT
GCTTGATAGCTGATGCTCAGTCTGGTAAAGTCACTGGGAACCTTAAAGGA
CACTTGGACTACTCATTTGCTTCAGCCTGGCACCCGGATGGAAGAATTTT
AGCCTCTGGGAACCAAGACACTACTTGCAGGCTGTGGGACATAAGGAACT
TATCGCAATCCCTGACTGTGTTGAAGGGAAATATGGGGGCCATTAGGGCT
CTCAAGTTCACCTCCGACCGCCCGGTTCTGGCAATGGCT
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