FC873747

Overview
NameFC873747
Unique NameFC873747
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length819
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6528 contig Ccv1_Contig6528:10..828. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC873747 vs. ExPASy Swiss-Prot
Match: PRF1_SOLLC (36.4 kDa proline-rich protein OS=Solanum lycopersicum GN=TPRP-F1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.884e-11
Identity = 35/81 (43.21%), Postives = 43/81 (53.09%), Query Frame = 2 
Query:  386 IDTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVXXXXXXXXXXXXXXXXXXXXXXXXV-TCGKTPPAGFTC 625
            ID LKLGACVD+LGGL+HIG+G      CCP+L GLV+L+AA+                        +  CGK PP  F C
Sbjct:  263 IDALKLGACVDVLGGLIHIGIGGSAKQTCCPLLGGLVDLDAAICLCTTIRLKLLNINIILPIALQVLIDDCGKYPPKDFKC 343
The following BLAST results are available for this feature:
BLAST of FC873747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PRF1_SOLLC2.884e-1143.2136.4 kDa proline-rich protein OS=Solanum lycopersi... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI2AB06FM1 AbsDev Citrus clementina cDNA clone KN0AAI2AB06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873747 ID=FC873747; Name=FC873747; organism=Citrus clementina; type=EST; length=819bp
ACTACAACAGAAAGAAGAGAGATTTAAAATAAAGAAAAAAAAAAAAATGG
ACTCCTCCAAACTCTCAGCTCTCCTCATCATTTGCATGCTTTTCATCTCC
ACAGCCACTCCCATTCTTGGCTGTGGCACGTGTGGCAAGCCGCACCCGAA
GCACAGGAAACCTAGGCAGCCTAGACCCATCGGTCTTCCTCCCATTGTCA
AACCCCCAGTTCCCTTGCCACCAGTCACTCTCCCTCCGGTGACCGTCCCG
CCGATCAAGCCACCAGTCGACCTCCCCACTCTCCCACCAGTTGCACTGCC
TCCAGTTCTCCCTAATCCACCAAGTGCTAGGAAGCCATGCCCATGTTCAT
ACACACCACCTCCACCAGCGGCTGCCACATGCCCCATTGACACCCTCAAA
TTGGGTGCTTGTGTGGACCTTCTTGGTGGGTTGGTTCACATTGGTCTTGG
TGACCCAGTTGTTAACCAATGCTGCCCAGTTCTACAAGGACTTGTTGAGT
TAGAAGCTGCTGTCTGCTTGTGCACTACTCTCAAGCTCAAGCTGCTTAAT
CTTAACATCTATCTTCCACTTGCTCTTCAGCTTCTTGTCACTTGCGGAAA
GACACCACCCGCTGGTTTCACTTGCACTCTTTAGATCTAAGGTTGGTAGA
TTGATGATGGATACTGAAGGAAGAAATCGACATGAAAGGATGTCGAGACT
TATTTGTTTGTTTCTTTTTCTCTCTCCCCCACTCTCTCTGTGTTTCTCTC
ATTGTTGGGATTGTAATGTTTGGTCACATTTAATTGTACACCCCTTTGTT
TTTATATGATTTGTCGCAT
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