FC873757

Overview
NameFC873757
Unique NameFC873757
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length431
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873757 vs. ExPASy Swiss-Prot
Match: PP330_ARATH (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 6.793e-18
Identity = 46/81 (56.79%), Postives = 61/81 (75.31%), Query Frame = 3
Query:  180 VVRKCITLLQVCA-SSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIVSLSF--PMSYAHNIFSHVQDP-NIFTWNTMIRG 410
            +V KCI LLQ    SS  KL+Q+HAFSIRHGV +++ +LGK+LI+ +VSL    PMSYAH +FS ++ P N+F WNT+IRG
Sbjct:   14 MVEKCINLLQTYGVSSITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFIWNTLIRG 94          
The following BLAST results are available for this feature:
BLAST of FC873757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PP330_ARATH6.793e-1856.79Pentatricopeptide repeat-containing protein At4g21... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI2AC06FM1 AbsDev Citrus clementina cDNA clone KN0AAI2AC06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873757 ID=FC873757; Name=FC873757; organism=Citrus clementina; type=EST; length=431bp
TTACACCGTATTGCTTTATCTCAGTCAGAATACAAGACAAAGCCGTTTGT
CCAACGAGCATGACCTCATGGCTCATGCACTCAAAGCAGCCAAGTTACGA
AGAAATCTCAGACCTTCCTTGTCGTGTAAAATCTCTCTACCACTCCACTC
CAGCTTCCCAAGAAAACCCAATAACTTCCGTGGTCAGGAAATGCATCACC
CTATTGCAAGTATGTGCATCTTCAAAGCACAAACTGAAGCAAGTTCATGC
CTTCTCTATCAGGCATGGGGTCCCGCTCAACAATCCGGACTTGGGCAAAT
ACCTTATCTACGCTATTGTGTCTCTTTCATTTCCAATGTCTTATGCTCAT
AACATCTTTTCACATGTTCAAGACCCAAATATTTTCACTTGGAATACAAT
GATCAGAGGTTAAAAAAAAAAAAAAAAAAAA
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