FC873760

Overview
NameFC873760
Unique NameFC873760
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length483
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14233 contig Ccv1_Contig14233:194..676. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873760 vs. ExPASy Swiss-Prot
Match: R35A1_ARATH (60S ribosomal protein L35a-1 OS=Arabidopsis thaliana GN=RPL35AA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 3.840e-32
Identity = 64/73 (87.67%), Postives = 66/73 (90.41%), Query Frame = 3
Query:    3 VNTH*EVAWYCGKRLAYIYKAKTKKNGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 221
            VNT  EV+WY GKR+AYIYKAKTKKNGSHYRCIWGKV R HGNSGVVRAKF SNLPPKSMG RVRVFMYPSNI
Sbjct:   40 VNTTEEVSWYKGKRMAYIYKAKTKKNGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112          
BLAST of FC873760 vs. ExPASy Swiss-Prot
Match: R35A3_ARATH (60S ribosomal protein L35a-3 OS=Arabidopsis thaliana GN=RPL35AC PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 5.015e-32
Identity = 64/73 (87.67%), Postives = 65/73 (89.04%), Query Frame = 3
Query:    3 VNTH*EVAWYCGKRLAYIYKAKTKKNGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 221
            VNT  EV WY GKR+AYIYKAKTKKNGSHYRCIWGKV R HGNSGVVRAKF SNLPPKSMG RVRVFMYPSNI
Sbjct:   40 VNTQEEVNWYKGKRMAYIYKAKTKKNGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112          
BLAST of FC873760 vs. ExPASy Swiss-Prot
Match: R35A4_ARATH (60S ribosomal protein L35a-4 OS=Arabidopsis thaliana GN=RPL35AD PE=3 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 1.117e-31
Identity = 64/73 (87.67%), Postives = 65/73 (89.04%), Query Frame = 3
Query:    3 VNTH*EVAWYCGKRLAYIYKAKTKKNGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 221
            VNT  EV WY GKRLAYIYKAKTKKNGSHYRCIWGKV R HGNSGVVR+KF SNLPPKSMG RVRVFMYPSNI
Sbjct:   39 VNTQEEVNWYKGKRLAYIYKAKTKKNGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111          
BLAST of FC873760 vs. ExPASy Swiss-Prot
Match: R35A2_ARATH (60S ribosomal protein L35a-2 OS=Arabidopsis thaliana GN=RPL35AB PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.117e-31
Identity = 64/73 (87.67%), Postives = 65/73 (89.04%), Query Frame = 3
Query:    3 VNTH*EVAWYCGKRLAYIYKAKTKKNGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 221
            VNT  EV WY GKRLAYIYKAKTKKNGSHYRCIWGKV R HGNSGVVR+KF SNLPPKSMG RVRVFMYPSNI
Sbjct:   39 VNTQEEVNWYKGKRLAYIYKAKTKKNGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111          
BLAST of FC873760 vs. ExPASy Swiss-Prot
Match: RL33B_YEAST (60S ribosomal protein L33-B OS=Saccharomyces cerevisiae GN=RPL33B PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.085e-18
Identity = 42/73 (57.53%), Postives = 54/73 (73.97%), Query Frame = 3
Query:    3 VNTH*EVAWYCGKRLAYIYKAKTKKNGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 221
            V T  E  +Y GKR+AY+Y+A  +  GS  R +WGKV R+HGNSGVVRA F++NLP K+ G  VR+F+YPSNI
Sbjct:   35 VATPQEAQFYLGKRIAYVYRASKEVRGSKIRVMWGKVTRTHGNSGVVRATFRNNLPAKTFGASVRIFLYPSNI 107          
BLAST of FC873760 vs. ExPASy Swiss-Prot
Match: RL33A_YEAST (60S ribosomal protein L33-A OS=Saccharomyces cerevisiae GN=RPL33A PE=1 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 2.416e-18
Identity = 41/73 (56.16%), Postives = 54/73 (73.97%), Query Frame = 3
Query:    3 VNTH*EVAWYCGKRLAYIYKAKTKKNGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 221
            V T  +  +Y GKR+AY+Y+A  +  GS  R +WGKV R+HGNSGVVRA F++NLP K+ G  VR+F+YPSNI
Sbjct:   35 VATPQDAQFYLGKRIAYVYRASKEVRGSKIRVMWGKVTRTHGNSGVVRATFRNNLPAKTFGASVRIFLYPSNI 107          
BLAST of FC873760 vs. ExPASy Swiss-Prot
Match: RL35A_ICTPU (60S ribosomal protein L35a OS=Ictalurus punctatus GN=rpl35a PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.489e-17
Identity = 42/73 (57.53%), Postives = 52/73 (71.23%), Query Frame = 3
Query:   18 EVAWYCGKRLAYIYKAKTKK-----NGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 221
            EV +Y GKR AY+YKAK          +  R IWGKV R+HGNSG+VRAKF SNLPPK++G R+RV +YPS +
Sbjct:   38 EVDFYLGKRCAYVYKAKKTTVTPGGKPNKTRVIWGKVTRAHGNSGMVRAKFTSNLPPKAIGHRIRVMLYPSRV 110          
BLAST of FC873760 vs. ExPASy Swiss-Prot
Match: RL35A_XENLA (60S ribosomal protein L35a OS=Xenopus laevis GN=rpl35a PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 1.326e-16
Identity = 41/73 (56.16%), Postives = 51/73 (69.86%), Query Frame = 3
Query:   18 EVAWYCGKRLAYIYKAKTKK-----NGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 221
            E  +Y GKR AY+YKAK          +  R IWGKV R+HGNSG+VRAKF+SNLP K++G R+RV +YPS I
Sbjct:   38 ETEFYFGKRCAYVYKAKNNTVTPGGKPNRTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
BLAST of FC873760 vs. ExPASy Swiss-Prot
Match: RL35A_RAT (60S ribosomal protein L35a OS=Rattus norvegicus GN=Rpl35a PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.326e-16
Identity = 41/73 (56.16%), Postives = 51/73 (69.86%), Query Frame = 3
Query:   18 EVAWYCGKRLAYIYKAKTKK-----NGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 221
            E  +Y GKR AY+YKAK          +  R IWGKV R+HGNSG+VRAKF+SNLP K++G R+RV +YPS I
Sbjct:   38 ETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
BLAST of FC873760 vs. ExPASy Swiss-Prot
Match: RL35A_PONAB (60S ribosomal protein L35a OS=Pongo abelii GN=RPL35A PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.326e-16
Identity = 41/73 (56.16%), Postives = 51/73 (69.86%), Query Frame = 3
Query:   18 EVAWYCGKRLAYIYKAKTKK-----NGSHYRCIWGKVARSHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 221
            E  +Y GKR AY+YKAK          +  R IWGKV R+HGNSG+VRAKF+SNLP K++G R+RV +YPS I
Sbjct:   38 ETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
The following BLAST results are available for this feature:
BLAST of FC873760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
R35A1_ARATH3.840e-3287.6760S ribosomal protein L35a-1 OS=Arabidopsis thalia... [more]
R35A3_ARATH5.015e-3287.6760S ribosomal protein L35a-3 OS=Arabidopsis thalia... [more]
R35A4_ARATH1.117e-3187.6760S ribosomal protein L35a-4 OS=Arabidopsis thalia... [more]
R35A2_ARATH1.117e-3187.6760S ribosomal protein L35a-2 OS=Arabidopsis thalia... [more]
RL33B_YEAST1.085e-1857.5360S ribosomal protein L33-B OS=Saccharomyces cerev... [more]
RL33A_YEAST2.416e-1856.1660S ribosomal protein L33-A OS=Saccharomyces cerev... [more]
RL35A_ICTPU3.489e-1757.5360S ribosomal protein L35a OS=Ictalurus punctatus ... [more]
RL35A_XENLA1.326e-1656.1660S ribosomal protein L35a OS=Xenopus laevis GN=rp... [more]
RL35A_RAT1.326e-1656.1660S ribosomal protein L35a OS=Rattus norvegicus GN... [more]
RL35A_PONAB1.326e-1656.1660S ribosomal protein L35a OS=Pongo abelii GN=RPL3... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AC09FM1 AbsDev Citrus clementina cDNA clone KN0AAI2AC09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873760 ID=FC873760; Name=FC873760; organism=Citrus clementina; type=EST; length=483bp
GAGTGAACACACATTAAGAGGTGGCGTGGTACTGCGGCAAGCGTTTGGCT
TACATTTACAAGGCCAAGACTAAGAAGAACGGATCCCACTACCGTTGCAT
TTGGGGAAAAGTTGCCAGATCTCACGGTAACAGCGGCGTCGTTCGCGCCA
AGTTCAAGTCCAATCTCCCTCCCAAATCCATGGGAGATAGAGTTAGGGTT
TTCATGTATCCCAGCAACATATGAGCAGCATGGTTCGAGAAGCTACTCGA
TCAACAAGTGAAATTTACCTTCTGAATTTGGGATTTATTCGCTTAACATT
TATGTTGCAAGATTTTGGAGTTGGGAGTTATACTGGCTAGATGTTTTGGC
TTTTGCTACTGTTAGTGTGGATTTTGGAACATTAATTTTAATGTTAATGC
TTAGTTTTTTGTTTTGAATTTTTCTTATCATGATATGAAGTTACTTTATC
ATTTGCCTTCAAAAAAAAAAAAAAAAAAAAAAA
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