FC873766

Overview
NameFC873766
Unique NameFC873766
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1265 contig Ccv1_Contig1265:1..751. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873766 vs. ExPASy Swiss-Prot
Match: MTPC1_ARATH (Metal tolerance protein C1 OS=Arabidopsis thaliana GN=MTPC1 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.047e-33
Identity = 74/105 (70.48%), Postives = 88/105 (83.81%), Query Frame = 2
Query:  224 RADAVSSVVALIGVGGSILGVKFLDPLAGLVISGIILKAGLEMGYQSVLELVDAAIPVENLMPI*PAENLTPIQETILKVEGVKGCHRLRGRRASSPLYLDVHIV 538
            R+DA+SS+VAL+GVGGSILGV FLDPLAGLV+S +I+ AGL+ G+QS+LELVDAAI         PA+ L PI++TIL+VEGVKGCHRLRGRRA S LYLDVHIV
Sbjct:  234 RSDAISSLVALVGVGGSILGVNFLDPLAGLVVSTMIVNAGLKTGHQSILELVDAAI---------PAQQLEPIRQTILQVEGVKGCHRLRGRRAGSSLYLDVHIV 329          
The following BLAST results are available for this feature:
BLAST of FC873766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
MTPC1_ARATH1.047e-3370.48Metal tolerance protein C1 OS=Arabidopsis thaliana... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI3DA04FM1 AbsDev Citrus clementina cDNA clone KN0AAI3DA04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873766 ID=FC873766; Name=FC873766; organism=Citrus clementina; type=EST; length=751bp
CGAGTGGCTGCTTCTACGTTGCGTGGGAGTGGCTGCTGCTACGTTGCGAT
GCTGATGCTATTGGGTCACTACTGCATCGCGTGCTGCTGGGTTGTTGATG
GGTGATGGCTGTAATTGTTGTGTGAGTGTGTAAGGCAGTGAAGGTGTGGC
TGTCGGCTGCTGTTTGTTGTTGCTTTACGGATGGTATGGTGGTGAAATTT
TTGGTAGAACAGATGTAAAAGAACGTGCTGATGCGGTTTCGTCTGTAGTT
GCTCTTATTGGGGTTGGAGGTTCTATTCTTGGAGTTAAGTTTCTAGATCC
CCTTGCCGGTTTAGTTATCTCAGGCATAATCCTAAAAGCTGGACTTGAGA
TGGGTTATCAGAGTGTCTTGGAACTGGTGGATGCTGCAATCCCAGTAGAA
AATTTGATGCCTATATGACCAGCAGAAAATTTGACGCCTATACAAGAAAC
AATACTAAAAGTTGAAGGAGTCAAGGGGTGCCACCGTTTGAGGGGAAGGA
GGGCAAGTTCACCTCTGTACCTTGATGTGCATATTGTGGAAGCTTGCAGG
TCGCTTTGTAAGTTTCAATTTTCGTTTAGAGTGCTATCGGAAGATGATAT
TGTTGCTGGAACTTTTACAGGAAGTCTTGCTAGAAATCTTATTGTTGGAG
TACTTGCATTAATTTTTGGAAGTTTTGTTGGGTAACTTGGCTTGGTGGCT
GGAATTCTTATTGCTTTTCTTAGAGTTTGATTGGAATTTGACTGCATTTT
T
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