FC873768

Overview
NameFC873768
Unique NameFC873768
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC873768_ssr48 microsatellite FC873768_ssr48:48..57. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC873768 vs. ExPASy Swiss-Prot
Match: TM9S1_HUMAN (Transmembrane 9 superfamily member 1 OS=Homo sapiens GN=TM9SF1 PE=2 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 8.047e-33
Identity = 69/156 (44.23%), Postives = 101/156 (64.74%), Query Frame = 2
Query:  248 FKVGDPVPLYANKVGPFHNPSETYRYFDLPFCSPDAIIKEKREALGEVLNGDRLVSAPYKLNFRDEKDSALACRKKLSEQDVAQFRSAVEKDFYFQMYYDDLPIWGFIGKVDKEGKTHPSEYKYFLYKHIQFDILYNKDRVI--EISAR-MDPHSL 706
            +K GDPV LY NKVGP+HNP ETY Y+ LP C P+ I + K  +LGEVL+GDR+  + Y++ FR+  +  + C  +LS   V Q R A+E+ +YF+   DDLPI GF+G +++ G   P  +K  L+ H+ F + ++ DR+I   +S R + PHSL
Sbjct:   36 YKAGDPVILYVNKVGPYHNPQETYHYYQLPVCCPEKI-RHKSLSLGEVLDGDRMAESLYEIRFRENVEKRILCHMQLSSAQVEQLRQAIEELYYFEFVVDDLPIRGFVGYMEESGFL-PHSHKIGLWTHLDFHLEFHGDRIIFANVSVRDVKPHSL 189          
BLAST of FC873768 vs. ExPASy Swiss-Prot
Match: TM9S1_RAT (Transmembrane 9 superfamily member 1 OS=Rattus norvegicus GN=Tm9sf1 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.051e-32
Identity = 73/182 (40.11%), Postives = 110/182 (60.44%), Query Frame = 2
Query:  170 PITLLVVGVLIACCLTHVRSDSSDHRFKVGDPVPLYANKVGPFHNPSETYRYFDLPFCSPDAIIKEKREALGEVLNGDRLVSAPYKLNFRDEKDSALACRKKLSEQDVAQFRSAVEKDFYFQMYYDDLPIWGFIGKVDKEGKTHPSEYKYFLYKHIQFDILYNKDRVI--EISAR-MDPHSL 706
            P+ +L++G+       H         +K GDPV LY NKVGP+HNP ETY Y+ LP C P+ I + K  +LGEVL+GDR+  + Y++ FR+  +  + C  +LS   V Q R A+E+ +YF+   DDLPI GF+G +++ G   P  +K  L+ H+ F + ++ DR+I   +S R + PHSL
Sbjct:   16 PVLILLLGI------GHGPRVEGVTHYKPGDPVILYVNKVGPYHNPQETYHYYQLPVCCPEKI-RHKSLSLGEVLDGDRMAESLYEIRFRENVEKRILCHMQLSSAQVEQLRQAIEELYYFEFVVDDLPIRGFVGYMEESGFL-PHSHKIGLWTHLDFHLEFHGDRIIFANVSVRDVKPHSL 189          
BLAST of FC873768 vs. ExPASy Swiss-Prot
Match: TM9S1_PONAB (Transmembrane 9 superfamily member 1 OS=Pongo abelii GN=TM9SF1 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.051e-32
Identity = 69/156 (44.23%), Postives = 100/156 (64.10%), Query Frame = 2
Query:  248 FKVGDPVPLYANKVGPFHNPSETYRYFDLPFCSPDAIIKEKREALGEVLNGDRLVSAPYKLNFRDEKDSALACRKKLSEQDVAQFRSAVEKDFYFQMYYDDLPIWGFIGKVDKEGKTHPSEYKYFLYKHIQFDILYNKDRVI--EISAR-MDPHSL 706
            +K GDPV LY NKVGP+HNP ETY Y+ LP C P+ I + K  +LGEVL+GDR+  + Y++ FR+  +  + C  +LS   V Q R A+E+ +YF+   DDLPI GF+G +++ G   P  +K  L+ H+ F + +  DR+I   +S R + PHSL
Sbjct:   36 YKAGDPVILYVNKVGPYHNPQETYHYYQLPVCCPEKI-RHKSLSLGEVLDGDRMAESLYEIRFRENVEKRILCHMQLSSAQVEQLRQAIEELYYFEFVVDDLPIRGFVGYMEESGFL-PHSHKIGLWTHLDFHLEFRGDRIIFANVSVRDVKPHSL 189          
BLAST of FC873768 vs. ExPASy Swiss-Prot
Match: TM9S1_BOVIN (Transmembrane 9 superfamily member 1 OS=Bos taurus GN=TM9SF1 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.051e-32
Identity = 69/156 (44.23%), Postives = 101/156 (64.74%), Query Frame = 2
Query:  248 FKVGDPVPLYANKVGPFHNPSETYRYFDLPFCSPDAIIKEKREALGEVLNGDRLVSAPYKLNFRDEKDSALACRKKLSEQDVAQFRSAVEKDFYFQMYYDDLPIWGFIGKVDKEGKTHPSEYKYFLYKHIQFDILYNKDRVI--EISAR-MDPHSL 706
            +K GDPV LY NKVGP+HNP ETY Y+ LP C P+ I + K  +LGEVL+GDR+  + Y++ FR+  +  + C  +LS   V Q R A+E+ +YF+   DDLPI GF+G +++ G   P  +K  L+ H+ F + ++ DR+I   +S R + PHSL
Sbjct:   36 YKAGDPVILYVNKVGPYHNPQETYHYYQLPVCCPEKI-RHKSLSLGEVLDGDRMAESLYEIRFRENVEKRVLCHMQLSSAQVEQLRQAIEELYYFEFVVDDLPIRGFVGYMEESGFL-PHSHKIGLWTHLDFHLEFHGDRIIFANVSVRDVKPHSL 189          
BLAST of FC873768 vs. ExPASy Swiss-Prot
Match: TM9S1_MOUSE (Transmembrane 9 superfamily member 1 OS=Mus musculus GN=Tm9sf1 PE=2 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.373e-32
Identity = 69/156 (44.23%), Postives = 101/156 (64.74%), Query Frame = 2
Query:  248 FKVGDPVPLYANKVGPFHNPSETYRYFDLPFCSPDAIIKEKREALGEVLNGDRLVSAPYKLNFRDEKDSALACRKKLSEQDVAQFRSAVEKDFYFQMYYDDLPIWGFIGKVDKEGKTHPSEYKYFLYKHIQFDILYNKDRVI--EISAR-MDPHSL 706
            +K GDPV LY NKVGP+HNP ETY Y+ LP C P+ I + K  +LGEVL+GDR+  + Y++ FR+  +  + C  +LS   V Q R A+E+ +YF+   DDLPI GF+G +++ G   P  +K  L+ H+ F + ++ DR+I   +S R + PHSL
Sbjct:   36 YKPGDPVILYVNKVGPYHNPQETYHYYQLPVCCPEKI-RHKSLSLGEVLDGDRMAESLYEIRFRENVEKRILCHMQLSSAQVEQLRQAIEELYYFEFVVDDLPIRGFVGYMEESGFL-PHSHKIGLWTHLDFHLEFHGDRIIFANVSVRDVKPHSL 189          
BLAST of FC873768 vs. ExPASy Swiss-Prot
Match: PHG1B_DICDI (Putative phagocytic receptor 1b OS=Dictyostelium discoideum GN=phg1b PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.518e-31
Identity = 67/170 (39.41%), Postives = 102/170 (60.00%), Query Frame = 2
Query:  173 ITLLVVGVLIACCLTHVRSDSSDHRFKVGDPVPLYANKVGPFHNPSETYRYFDLPFCSPDAIIKEKREALGEVLNGDRLVSAPYKLNFRDEKDSALACRKKLSEQDVAQFRSAVEKDFYFQMYYDDLPIWGFIGKVDKEGKTHPSEYKYFLYKHIQFDILYNKDRVIEIS 682
            I L+ +  +I   +  V S S+ H FK  D VP Y N VGP+ NP+ETY ++ LPFC P +I   K+  LGE+L GD  V + Y+  F+   ++   C   L ++D+ +F+ A+ + +Y +M YDDLPI+ F+G VD    T+    +Y+LY HI F+  YN D+VI ++
Sbjct:    5 ILLIYLICIIVSSIVLVES-SNKHHFKENDEVPFYVNNVGPYSNPTETYEFYTLPFCKPSSI-SYKKTKLGEILQGDSAVLSDYQFPFKSSFENKQLCEYTLKKEDIEKFKKAIGEYYYAEMIYDDLPIFSFVGTVDDSDLTN---IRYYLYNHIPFEFDYNGDQVIRVN 169          
BLAST of FC873768 vs. ExPASy Swiss-Prot
Match: TM9S3_HUMAN (Transmembrane 9 superfamily member 3 OS=Homo sapiens GN=TM9SF3 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 3.065e-24
Identity = 55/163 (33.74%), Postives = 91/163 (55.83%), Query Frame = 2
Query:  197 LIACCLTHVRSDSSDHRFKVGDPVPLYANKVGPFHNPSETYRYFDLPFC-SPDAIIKEKREALGEVLNGDRLVSAPYKLNFRDEKDSALACRKKLSEQDVAQFRSAVEKDFYFQMYYDDLPIWGFIGKVDKEGKTHPSEYKYFLYKHIQFDILYNKDRVIEIS 682
            L+   L   R+D  +H ++  + V L+ N VGP+HN  ETY+YF LPFC      I    E LGE L G  L  +   + F+D+   A  C   L ++    F  A++  +++QMY DDLPIWG +G+ D+ G+       Y+L+ + + +I +N +R+++++
Sbjct:   18 LLLLLLPRTRADEHEHTYQDKEEVVLWMNTVGPYHNRQETYKYFSLPFCVGSKKSISHYHETLGEALQGVELEFSGLDIKFKDDVMPATYCEIDLDKEKRDAFVYAIKNHYWYQMYIDDLPIWGIVGEADENGE------DYYLWTYKKLEIGFNGNRIVDVN 174          
BLAST of FC873768 vs. ExPASy Swiss-Prot
Match: TM9S3_MOUSE (Transmembrane 9 superfamily member 3 OS=Mus musculus GN=Tm9sf3 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.003e-24
Identity = 55/163 (33.74%), Postives = 90/163 (55.21%), Query Frame = 2
Query:  197 LIACCLTHVRSDSSDHRFKVGDPVPLYANKVGPFHNPSETYRYFDLPFC-SPDAIIKEKREALGEVLNGDRLVSAPYKLNFRDEKDSALACRKKLSEQDVAQFRSAVEKDFYFQMYYDDLPIWGFIGKVDKEGKTHPSEYKYFLYKHIQFDILYNKDRVIEIS 682
            L+   L   RSD  +H ++  + V L+ N VGP+HN  ETY+YF LPFC      I    E LGE L G  L  +   + F+D+      C   L ++    F  A++  +++QMY DDLPIWG +G+ D+ G+       Y+L+ + + +I +N +R+++++
Sbjct:   16 LLLLLLPRARSDEHEHTYQDKEEVVLWMNTVGPYHNRQETYKYFSLPFCVGSKKSISHYHETLGEALQGVELEFSGLDIKFKDDVMPGTYCEIDLDKEKRDAFVYAIKNHYWYQMYIDDLPIWGIVGEADENGE------DYYLWTYKKLEIGFNGNRIVDVN 172          
The following BLAST results are available for this feature:
BLAST of FC873768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
TM9S1_HUMAN8.047e-3344.23Transmembrane 9 superfamily member 1 OS=Homo sapie... [more]
TM9S1_RAT1.051e-3240.11Transmembrane 9 superfamily member 1 OS=Rattus nor... [more]
TM9S1_PONAB1.051e-3244.23Transmembrane 9 superfamily member 1 OS=Pongo abel... [more]
TM9S1_BOVIN1.051e-3244.23Transmembrane 9 superfamily member 1 OS=Bos taurus... [more]
TM9S1_MOUSE1.373e-3244.23Transmembrane 9 superfamily member 1 OS=Mus muscul... [more]
PHG1B_DICDI1.518e-3139.41Putative phagocytic receptor 1b OS=Dictyostelium d... [more]
TM9S3_HUMAN3.065e-2433.74Transmembrane 9 superfamily member 3 OS=Homo sapie... [more]
TM9S3_MOUSE4.003e-2433.74Transmembrane 9 superfamily member 3 OS=Mus muscul... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAI3DA07FM1 AbsDev Citrus clementina cDNA clone KN0AAI3DA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873768 ID=FC873768; Name=FC873768; organism=Citrus clementina; type=EST; length=711bp
AAAGAAGAAAAAAAAATTACTCAGATCTCCGGGGCCTCGCTTAATAGATA
TATATATAACCTGCACGACCTCCAGCTCCCTCTAAGAGGCCTGTGTCTGG
TTCATTGTCACTTGAAACTTGCACTTGTCTTCACGTTCTCAGAAAATTAG
TCAAACAATGAGCGATTCCCCTATCACACTTCTTGTTGTTGGGGTTCTGA
TCGCCTGTTGCTTGACCCATGTGAGATCTGATTCTTCCGATCACCGCTTC
AAGGTCGGTGACCCTGTCCCTCTATACGCCAATAAGGTTGGCCCTTTCCA
CAACCCCAGTGAAACTTATCGATATTTTGATCTACCATTCTGCTCCCCAG
ATGCAATAATAAAAGAGAAAAGGGAAGCACTTGGTGAGGTGTTGAATGGG
GACCGACTTGTTAGTGCTCCTTATAAACTCAACTTCAGAGACGAGAAGGA
CTCTGCTCTTGCGTGTAGAAAGAAGTTGTCCGAGCAAGATGTTGCTCAGT
TCCGAAGTGCAGTGGAAAAAGACTTCTATTTCCAAATGTACTATGATGAC
TTACCCATCTGGGGGTTCATTGGTAAAGTTGACAAGGAAGGAAAGACTCA
TCCGAGCGAGTATAAGTATTTCCTTTACAAGCATATCCAGTTTGACATTC
TTTATAACAAAGACCGTGTTATTGAGATCAGTGCTCGGATGGATCCTCAT
TCTTTGGTGGA
back to top