FC873776

Overview
NameFC873776
Unique NameFC873776
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length582
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10125 contig Ccv1_Contig10125:1..582. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873776 vs. ExPASy Swiss-Prot
Match: KCAB_ORYSJ (Probable voltage-gated potassium channel subunit beta OS=Oryza sativa subsp. japonica GN=KOB1 PE=1 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 5.766e-43
Identity = 89/102 (87.25%), Postives = 92/102 (90.20%), Query Frame = 3
Query:    6 DSRFALENYKNLANRSLVDDVLNKVNRLKPIADELGVPLAQLAIAWCASNPNVSSVITGATKESQIQENMKAIDVIPLLTPSVMDKIEAAVLSKPKRPESYR 311
            DSRFALENYKNLANRSLVDD L KVN LKPIA ELGV LAQLAIAWCASNPNVSSVITGATKE+QI ENMKA+DVIPLLTP V+DKIEA V SKPKR ESYR
Sbjct:  227 DSRFALENYKNLANRSLVDDTLRKVNGLKPIASELGVSLAQLAIAWCASNPNVSSVITGATKENQIVENMKALDVIPLLTPEVVDKIEAVVQSKPKRTESYR 328          
BLAST of FC873776 vs. ExPASy Swiss-Prot
Match: KCAB2_RAT (Voltage-gated potassium channel subunit beta-2 OS=Rattus norvegicus GN=Kcnab2 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.593e-14
Identity = 42/106 (39.62%), Postives = 66/106 (62.26%), Query Frame = 3
Query:    3 PDSRFALENYKNLANRSLVDDVLN---KVNRLKPIADELGVPLAQLAIAWCASNPNVSSVITGATKESQIQENMKAIDVIPLLTPSVMDKIEAAVLSKPKRPESYR 311
            P SR +L+ Y+ L ++ L ++      K+  L+ IA+ LG  L QLAIAWC  N  VSSV+ GA+   Q+ EN+ AI V+P L+ S++ +I++ + +KP   + YR
Sbjct:  261 PYSRASLKGYQWLKDKILSEEGRRQQAKLKELQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASNAEQLMENIGAIQVLPKLSSSIVHEIDSILGNKPYSKKDYR 366          
BLAST of FC873776 vs. ExPASy Swiss-Prot
Match: KCAB2_MOUSE (Voltage-gated potassium channel subunit beta-2 OS=Mus musculus GN=Kcnab2 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.593e-14
Identity = 42/106 (39.62%), Postives = 66/106 (62.26%), Query Frame = 3
Query:    3 PDSRFALENYKNLANRSLVDDVLN---KVNRLKPIADELGVPLAQLAIAWCASNPNVSSVITGATKESQIQENMKAIDVIPLLTPSVMDKIEAAVLSKPKRPESYR 311
            P SR +L+ Y+ L ++ L ++      K+  L+ IA+ LG  L QLAIAWC  N  VSSV+ GA+   Q+ EN+ AI V+P L+ S++ +I++ + +KP   + YR
Sbjct:  261 PYSRASLKGYQWLKDKILSEEGRRQQAKLKELQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASNAEQLMENIGAIQVLPKLSSSIVHEIDSILGNKPYSKKDYR 366          
BLAST of FC873776 vs. ExPASy Swiss-Prot
Match: KCAB2_HUMAN (Voltage-gated potassium channel subunit beta-2 OS=Homo sapiens GN=KCNAB2 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 9.593e-14
Identity = 42/106 (39.62%), Postives = 66/106 (62.26%), Query Frame = 3
Query:    3 PDSRFALENYKNLANRSLVDDVLN---KVNRLKPIADELGVPLAQLAIAWCASNPNVSSVITGATKESQIQENMKAIDVIPLLTPSVMDKIEAAVLSKPKRPESYR 311
            P SR +L+ Y+ L ++ L ++      K+  L+ IA+ LG  L QLAIAWC  N  VSSV+ GA+   Q+ EN+ AI V+P L+ S++ +I++ + +KP   + YR
Sbjct:  261 PYSRASLKGYQWLKDKILSEEGRRQQAKLKELQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASNADQLMENIGAIQVLPKLSSSIIHEIDSILGNKPYSKKDYR 366          
BLAST of FC873776 vs. ExPASy Swiss-Prot
Match: KCAB2_BOVIN (Voltage-gated potassium channel subunit beta-2 OS=Bos taurus GN=KCNAB2 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.593e-14
Identity = 42/106 (39.62%), Postives = 66/106 (62.26%), Query Frame = 3
Query:    3 PDSRFALENYKNLANRSLVDDVLN---KVNRLKPIADELGVPLAQLAIAWCASNPNVSSVITGATKESQIQENMKAIDVIPLLTPSVMDKIEAAVLSKPKRPESYR 311
            P SR +L+ Y+ L ++ L ++      K+  L+ IA+ LG  L QLAIAWC  N  VSSV+ GA+   Q+ EN+ AI V+P L+ S++ +I++ + +KP   + YR
Sbjct:  261 PYSRASLKGYQWLKDKILSEEGRRQQAKLKELQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASSADQLMENIGAIQVLPKLSSSIIHEIDSILGNKPYSKKDYR 366          
BLAST of FC873776 vs. ExPASy Swiss-Prot
Match: KCAB1_RAT (Voltage-gated potassium channel subunit beta-1 OS=Rattus norvegicus GN=Kcnab1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.137e-13
Identity = 41/104 (39.42%), Postives = 65/104 (62.50%), Query Frame = 3
Query:    9 SRFALENYKNLANRSLVDDVLNKVNRLK---PIADELGVPLAQLAIAWCASNPNVSSVITGATKESQIQENMKAIDVIPLLTPSVMDKIEAAVLSKPKRPESYR 311
            SR +L+ Y+ L  R + ++   + N+LK   PIA+ LG  L QLA+AWC  N  VSSV+ G++   Q+ EN+ AI V+P +T  V+++I+  + +KP   + YR
Sbjct:  297 SRASLKCYQWLKERIVSEEGRKQQNKLKDLSPIAERLGCTLPQLAVAWCLRNEGVSSVLLGSSTPEQLIENLGAIQVLPKMTSHVVNEIDNILRNKPYSKKDYR 400          
BLAST of FC873776 vs. ExPASy Swiss-Prot
Match: KCAB1_RABIT (Voltage-gated potassium channel subunit beta-1 OS=Oryctolagus cuniculus GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.137e-13
Identity = 41/104 (39.42%), Postives = 65/104 (62.50%), Query Frame = 3
Query:    9 SRFALENYKNLANRSLVDDVLNKVNRLK---PIADELGVPLAQLAIAWCASNPNVSSVITGATKESQIQENMKAIDVIPLLTPSVMDKIEAAVLSKPKRPESYR 311
            SR +L+ Y+ L  R + ++   + N+LK   PIA+ LG  L QLA+AWC  N  VSSV+ G++   Q+ EN+ AI V+P +T  V+++I+  + +KP   + YR
Sbjct:  315 SRASLKCYQWLKERIVSEEGRKQQNKLKDLSPIAERLGCTLPQLAVAWCLRNEGVSSVLLGSSTPEQLIENLGAIQVLPKMTSHVVNEIDNILRNKPYSKKDYR 418          
BLAST of FC873776 vs. ExPASy Swiss-Prot
Match: KCAB1_MUSPU (Voltage-gated potassium channel subunit beta-1 OS=Mustela putorius GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.137e-13
Identity = 41/104 (39.42%), Postives = 65/104 (62.50%), Query Frame = 3
Query:    9 SRFALENYKNLANRSLVDDVLNKVNRLK---PIADELGVPLAQLAIAWCASNPNVSSVITGATKESQIQENMKAIDVIPLLTPSVMDKIEAAVLSKPKRPESYR 311
            SR +L+ Y+ L  R + ++   + N+LK   PIA+ LG  L QLA+AWC  N  VSSV+ G++   Q+ EN+ AI V+P +T  V+++I+  + +KP   + YR
Sbjct:  304 SRASLKCYQWLKERIVSEEGRKQQNKLKDLSPIAERLGCTLPQLAVAWCLRNEGVSSVLLGSSTPEQLIENLGAIQVLPKMTSHVVNEIDNILRNKPYSKKDYR 407          
BLAST of FC873776 vs. ExPASy Swiss-Prot
Match: KCAB1_MOUSE (Voltage-gated potassium channel subunit beta-1 OS=Mus musculus GN=Kcnab1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.137e-13
Identity = 41/104 (39.42%), Postives = 65/104 (62.50%), Query Frame = 3
Query:    9 SRFALENYKNLANRSLVDDVLNKVNRLK---PIADELGVPLAQLAIAWCASNPNVSSVITGATKESQIQENMKAIDVIPLLTPSVMDKIEAAVLSKPKRPESYR 311
            SR +L+ Y+ L  R + ++   + N+LK   PIA+ LG  L QLA+AWC  N  VSSV+ G++   Q+ EN+ AI V+P +T  V+++I+  + +KP   + YR
Sbjct:  297 SRASLKCYQWLKERIVSEEGRKQQNKLKDLSPIAERLGCTLPQLAVAWCLRNEGVSSVLLGSSTPEQLIENLGAIQVLPKMTSHVVNEIDNILRNKPYSKKDYR 400          
BLAST of FC873776 vs. ExPASy Swiss-Prot
Match: KCAB1_HUMAN (Voltage-gated potassium channel subunit beta-1 OS=Homo sapiens GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.137e-13
Identity = 41/104 (39.42%), Postives = 65/104 (62.50%), Query Frame = 3
Query:    9 SRFALENYKNLANRSLVDDVLNKVNRLK---PIADELGVPLAQLAIAWCASNPNVSSVITGATKESQIQENMKAIDVIPLLTPSVMDKIEAAVLSKPKRPESYR 311
            SR +L+ Y+ L  R + ++   + N+LK   PIA+ LG  L QLA+AWC  N  VSSV+ G++   Q+ EN+ AI V+P +T  V+++I+  + +KP   + YR
Sbjct:  315 SRASLKCYQWLKERIVSEEGRKQQNKLKDLSPIAERLGCTLPQLAVAWCLRNEGVSSVLLGSSTPEQLIENLGAIQVLPKMTSHVVNEIDNILRNKPYSKKDYR 418          
The following BLAST results are available for this feature:
BLAST of FC873776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
KCAB_ORYSJ5.766e-4387.25Probable voltage-gated potassium channel subunit b... [more]
KCAB2_RAT9.593e-1439.62Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB2_MOUSE9.593e-1439.62Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB2_HUMAN9.593e-1439.62Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB2_BOVIN9.593e-1439.62Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB1_RAT2.137e-1339.42Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_RABIT2.137e-1339.42Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_MUSPU2.137e-1339.42Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_MOUSE2.137e-1339.42Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_HUMAN2.137e-1339.42Voltage-gated potassium channel subunit beta-1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AD04FM1 AbsDev Citrus clementina cDNA clone KN0AAI2AD04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873776 ID=FC873776; Name=FC873776; organism=Citrus clementina; type=EST; length=582bp
CACCTGACAGTCGCTTTGCTTTGGAAAATTACAAGAATCTTGCTAACCGA
TCACTGGTCGATGATGTGCTGAATAAAGTTAATCGACTGAAGCCAATTGC
AGATGAACTAGGCGTGCCTTTAGCTCAACTTGCAATTGCATGGTGTGCTT
CAAATCCTAATGTATCTTCAGTTATAACTGGTGCCACAAAGGAATCCCAG
ATTCAAGAGAACATGAAAGCCATTGATGTCATTCCACTGCTGACTCCGTC
AGTGATGGACAAGATTGAGGCTGCTGTTCTAAGCAAGCCAAAGCGTCCGG
AGTCGTATCGGTAGGCGGAGATTATTTATTAGCTCATTTCCATCTTCTGC
TGCGTGCGACATACCTAGCTGCTTCAGTGTATTCATGTTGTTACTATGCT
TGTCTGATGTTTTAGTTATTGTTTCTTAGCTCTGTACTTCAGAGACTCTC
AGATATGATATATTTTCTTGTAAAAGAAAATGATTATTGTTCTTGGTATT
GGACTAGTGAAGGTGGTGAATTTCTTATGGGCAATCATTGTGGTTTTGTG
GATTTAAAAAAAAAAAAAAAAAAAAAAAAAAA
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