FC873783

Overview
NameFC873783
Unique NameFC873783
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC873783_ssr463 microsatellite FC873783_ssr463:463..477. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14767 contig Ccv1_Contig14767:31..768. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873783 vs. ExPASy Swiss-Prot
Match: FDH_SOLTU (Formate dehydrogenase, mitochondrial OS=Solanum tuberosum GN=FDH1 PE=1 SV=2)

HSP 1 Score: 354.369 bits (908), Expect = 3.761e-97
Identity = 177/227 (77.97%), Postives = 186/227 (81.94%), Query Frame = 2
Query:   56 MAMKRVASSAINAFAXXXXXXXXXXXXXXXXXXGRKKIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPXHCNLLYHD 736
            MAM RVAS+A  A                    G KKIVGVFYK NEYA MNPNFLGC E   G+REWLESKGHQYIVT DKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAG+GSDH+DL      GLTVAEVTGSN VSVAEDELMRILILVRNFLPGHHQVI+GEWNVA +A+RAYDLEGKTVGTVG GRIG+LLLQRLKP +CNLLYHD
Sbjct:    1 MAMSRVASTAARAITSPSSLVFTRELQASP---GPKKIVGVFYKANEYAEMNPNFLGCAENALGIREWLESKGHQYIVTPDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGIGSDHVDLKAAAAAGLTVAEVTGSNTVSVAEDELMRILILVRNFLPGHHQVINGEWNVAAIAHRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHD 224          
BLAST of FC873783 vs. ExPASy Swiss-Prot
Match: FDH_ARATH (Formate dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=FDH1 PE=1 SV=1)

HSP 1 Score: 348.206 bits (892), Expect = 2.695e-95
Identity = 170/227 (74.89%), Postives = 187/227 (82.38%), Query Frame = 2
Query:   56 MAMKRVASSAINAFAXXXXXXXXXXXXXXXXXXGRKKIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPXHCNLLYHD 736
            MAM++ A + I A +                    KKIVGVFYK NEYA+ NPNFLGCVE   G+R+WLES+GHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNL+LLLTAG+GSDHIDL      GLTVAEVTGSNVVSVAEDELMRILIL+RNF+PG++QV+ GEWNVAG+AYRAYDLEGKT+GTVG GRIGKLLLQRLKP  CNLLYHD
Sbjct:    1 MAMRQAAKATIRACSSSSSSGYFARRQFNASSGDSKKIVGVFYKANEYATKNPNFLGCVENALGIRDWLESQGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHD 227          
BLAST of FC873783 vs. ExPASy Swiss-Prot
Match: FDH1_ORYSJ (Formate dehydrogenase 1, mitochondrial OS=Oryza sativa subsp. japonica GN=Os06g0486800 PE=1 SV=2)

HSP 1 Score: 330.872 bits (847), Expect = 4.453e-90
Identity = 159/194 (81.96%), Postives = 173/194 (89.18%), Query Frame = 2
Query:  155 GRKKIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPXHCNLLYHD 736
            G KKIVGVFYKG EYA  NPNF+GCVEG  G+REWLESKGH YIVTDDKEG + ELEKHI D+HVLI+TPFHPAYV+AERIKKAKNL+LLLTAG+GSDHIDL      GLTVAEVTGSN VSVAEDELMRILIL+RNFLPG+ QV+ GEWNVAG+AYRAYDLEGKTVGTVG GRIG+LLLQRLKP +CNLLYHD
Sbjct:   26 GSKKIVGVFYKGGEYADKNPNFVGCVEGALGIREWLESKGHHYIVTDDKEGLNSELEKHIEDMHVLITTPFHPAYVSAERIKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTGSNTVSVAEDELMRILILLRNFLPGYQQVVHGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHD 219          
BLAST of FC873783 vs. ExPASy Swiss-Prot
Match: FDH2_ORYSJ (Formate dehydrogenase 2, mitochondrial OS=Oryza sativa subsp. japonica GN=Os06g0486900 PE=2 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 2.886e-89
Identity = 152/194 (78.35%), Postives = 173/194 (89.18%), Query Frame = 2
Query:  155 GRKKIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPXHCNLLYHD 736
            G KK+VGVFYKG EYA  NPNF+GCV+   G+R WLESKGH+YIVTDDKEG +CELEKHI D HVLI+TPFHPAY+TAERIKKAKNL+LLLTAGVGSDHIDL      GLTVAE+TGSN VSVAED+LMRIL+L+RNFLPGHHQ+++GEWNVAG+A+R YDLEGKTVGTVG GRIG+LLLQRLKP +CNL+YHD
Sbjct:   28 GSKKVVGVFYKGGEYADKNPNFVGCVDSALGIRGWLESKGHRYIVTDDKEGINCELEKHIEDAHVLITTPFHPAYITAERIKKAKNLELLLTAGVGSDHIDLPAAAAAGLTVAEITGSNTVSVAEDQLMRILLLLRNFLPGHHQIVNGEWNVAGIAHRTYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLMYHD 221          
BLAST of FC873783 vs. ExPASy Swiss-Prot
Match: FDH_HORVU (Formate dehydrogenase, mitochondrial OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 1.936e-85
Identity = 151/194 (77.84%), Postives = 168/194 (86.60%), Query Frame = 2
Query:  155 GRKKIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPXHCNLLYHD 736
            G KKIVGVFY+  EYA  NPNF+GCVEG  G+R+WLESKGH YIVTDDKEG + ELEKHI D+HVLI+TPFHPAYVTAE+IKKAK  +LLLTAG+GSDHIDL      GLTVA VTGSN VSVAEDELMRILIL+RNFLPG+ QV+ GEWNVAG+A+RAYDLEGKTVGTVG GR G+LLLQRLKP +CNLLYHD
Sbjct:   27 GSKKIVGVFYQAGEYADKNPNFVGCVEGALGIRDWLESKGHHYIVTDDKEGFNSELEKHIEDMHVLITTPFHPAYVTAEKIKKAKTPELLLTAGIGSDHIDLPAAAAAGLTVARVTGSNTVSVAEDELMRILILLRNFLPGYQQVVKGEWNVAGIAHRAYDLEGKTVGTVGAGRYGRLLLQRLKPFNCNLLYHD 220          
BLAST of FC873783 vs. ExPASy Swiss-Prot
Match: FDH_EMENI (Probable formate dehydrogenase OS=Emericella nidulans GN=aciA PE=2 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 1.036e-54
Identity = 104/190 (54.74%), Postives = 135/190 (71.05%), Query Frame = 2
Query:  176 VFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLN--XXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPXHC-NLLYHD 736
            V Y G  +A   P  LG  E   G+R+W+E +GH  + T DK+G +   +K + D  V+I+TPFHP Y+TAER+ KAKNL+L +TAG+GSDH+DL+       G+TVAEVTGSNVVSVAE  +M IL+LVRNF+P H Q+ +G+WNVA VA   +DLE K VGTVG GRIG+ +L+RLKP  C  LLY+D
Sbjct:    2 VLYDGGSHAKDQPGLLGTTENELGIRKWIEEQGHTLVTTSDKDGENSTFDKELVDAEVIITTPFHPGYLTAERLAKAKNLKLAVTAGIGSDHVDLDAANKTNGGITVAEVTGSNVVSVAEHVVMTILLLVRNFVPAHDQIRNGDWNVAAVAKNEFDLENKVVGTVGVGRIGERVLRRLKPFDCKELLYYD 191          
BLAST of FC873783 vs. ExPASy Swiss-Prot
Match: FDH_NEUCR (Formate dehydrogenase OS=Neurospora crassa GN=fdh PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.767e-54
Identity = 103/194 (53.09%), Postives = 136/194 (70.10%), Query Frame = 2
Query:  164 KIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLN--XXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPXHC-NLLYHD 736
            K++ V Y G ++    P  LG ++   GLR+WLE +GH  + T DK+G +   +K + D  ++I+TPFHP Y+TAER+ +AK L+L +TAG+GSDH+DLN       G+TVAEVTGSNVVSVAE  LM IL+LVRNF+P H Q+  G W+VA  A   +DLEGK VGTVG GRIG+ +L+RLKP  C  LLY+D
Sbjct:    3 KVLAVLYDGGKHGEEVPELLGTIQNELGLRKWLEDQGHTLVTTCDKDGENSTFDKELEDAEIIITTPFHPGYLTAERLARAKKLKLAVTAGIGSDHVDLNAANKTNGGITVAEVTGSNVVSVAEHVLMTILVLVRNFVPAHEQIQEGRWDVAEAAKNEFDLEGKVVGTVGVGRIGERVLRRLKPFDCKELLYYD 196          
BLAST of FC873783 vs. ExPASy Swiss-Prot
Match: FDH_PICAN (Formate dehydrogenase OS=Pichia angusta GN=FMDH PE=3 SV=2)

HSP 1 Score: 208.379 bits (529), Expect = 3.333e-53
Identity = 105/194 (54.12%), Postives = 136/194 (70.10%), Query Frame = 2
Query:  164 KIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXG--LTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPXH-CNLLYHD 736
            K+V V Y   ++A       GC E   G+R+WLE +GH  +VT DKEG +  LEK+I D  V+ISTPFHPAY+T ERI KAK L+LL+ AGVGSDHIDL+     G  ++V EVTGSNVVSVAE  +M +L+LVRNF+P H Q+ISG WNVA +A  ++D+EGK + T+G GRIG  +L+RL   +   LLY+D
Sbjct:    2 KVVLVLYDAGKHAQDEERLYGCTENALGIRDWLEKQGHDVVVTSDKEGQNSVLEKNISDADVIISTPFHPAYITKERIDKAKKLKLLVVAGVGSDHIDLDYINQSGRDISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQIISGGWNVAEIAKDSFDIEGKVIATIGAGRIGYRVLERLVAFNPKELLYYD 195          
BLAST of FC873783 vs. ExPASy Swiss-Prot
Match: FDH2_YEAST (Formate dehydrogenase 2 OS=Saccharomyces cerevisiae GN=FDH2 PE=2 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 3.341e-45
Identity = 90/193 (46.63%), Postives = 130/193 (67.36%), Query Frame = 2
Query:  164 KIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEG-PDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPXH-CNLLYHD 736
            K++ V Y+G ++A      LGC+E   G+R ++E +G++ + T DK+  P   +++ + D  ++I+TPF PAY++  RI +A NL+L +TAGVGSDH+DL       +TV EVTGSNVVSVAE  +  IL+L+RN+  GH Q I+GEW++AGVA   YDLE K + TVG GRIG  +L+RL   +   LLY+D
Sbjct:    5 KVLLVLYEGGKHAEEQEKLLGCIENELGIRNFIEEQGYELVTTIDKDPEPTSTVDRELKDAEIVITTPFFPAYISRNRIAEAPNLKLCVTAGVGSDHVDLEAANERKITVTEVTGSNVVSVAEHVMATILVLIRNYNGGHQQAINGEWDIAGVAKNEYDLEDKIISTVGAGRIGYRVLERLVAFNPKKLLYYD 197          
BLAST of FC873783 vs. ExPASy Swiss-Prot
Match: FDH1_YEAST (Formate dehydrogenase 1 OS=Saccharomyces cerevisiae GN=FDH1 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.341e-45
Identity = 90/193 (46.63%), Postives = 130/193 (67.36%), Query Frame = 2
Query:  164 KIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEG-PDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAYDLEGKTVGTVGCGRIGKLLLQRLKPXH-CNLLYHD 736
            K++ V Y+G ++A      LGC+E   G+R ++E +G++ + T DK+  P   +++ + D  ++I+TPF PAY++  RI +A NL+L +TAGVGSDH+DL       +TV EVTGSNVVSVAE  +  IL+L+RN+  GH Q I+GEW++AGVA   YDLE K + TVG GRIG  +L+RL   +   LLY+D
Sbjct:    5 KVLLVLYEGGKHAEEQEKLLGCIENELGIRNFIEEQGYELVTTIDKDPEPTSTVDRELKDAEIVITTPFFPAYISRNRIAEAPNLKLCVTAGVGSDHVDLEAANERKITVTEVTGSNVVSVAEHVMATILVLIRNYNGGHQQAINGEWDIAGVAKNEYDLEDKIISTVGAGRIGYRVLERLVAFNPKKLLYYD 197          
The following BLAST results are available for this feature:
BLAST of FC873783 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
FDH_SOLTU3.761e-9777.97Formate dehydrogenase, mitochondrial OS=Solanum tu... [more]
FDH_ARATH2.695e-9574.89Formate dehydrogenase, mitochondrial OS=Arabidopsi... [more]
FDH1_ORYSJ4.453e-9081.96Formate dehydrogenase 1, mitochondrial OS=Oryza sa... [more]
FDH2_ORYSJ2.886e-8978.35Formate dehydrogenase 2, mitochondrial OS=Oryza sa... [more]
FDH_HORVU1.936e-8577.84Formate dehydrogenase, mitochondrial OS=Hordeum vu... [more]
FDH_EMENI1.036e-5454.74Probable formate dehydrogenase OS=Emericella nidul... [more]
FDH_NEUCR1.767e-5453.09Formate dehydrogenase OS=Neurospora crassa GN=fdh ... [more]
FDH_PICAN3.333e-5354.12Formate dehydrogenase OS=Pichia angusta GN=FMDH PE... [more]
FDH2_YEAST3.341e-4546.63Formate dehydrogenase 2 OS=Saccharomyces cerevisia... [more]
FDH1_YEAST3.341e-4546.63Formate dehydrogenase 1 OS=Saccharomyces cerevisia... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AD11FM1 AbsDev Citrus clementina cDNA clone KN0AAI2AD11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873783 ID=FC873783; Name=FC873783; organism=Citrus clementina; type=EST; length=738bp
CGCTGTGCTTTAGTGAGGACTCGGCAGTGTGAGTGACAAATTATATAATT
GGGAGATGGCCATGAAGAGAGTAGCTAGCTCTGCAATTAACGCTTTTGCT
TCGTCGGGATATCTTCGTTCATCGTCGAGGTTTTCTCGACACTATGCTTC
TTCTGGAAGAAAGAAGATTGTTGGGGTGTTCTACAAGGGCAATGAATACG
CTTCAATGAATCCCAACTTTCTTGGTTGTGTGGAGGGAGGCTGTGGTCTG
CGTGAATGGCTGGAATCGAAAGGTCACCAATATATTGTCACTGATGACAA
AGAGGGACCAGACTGTGAACTAGAGAAACATATTCCTGATCTCCACGTCC
TCATATCTACCCCCTTCCACCCTGCCTATGTTACGGCGGAAAGGATTAAG
AAGGCCAAAAATTTGCAACTGCTTCTCACTGCTGGAGTTGGCTCTGATCA
TATTGATCTAAATGCTGCTGCTGCTGCTGGTTTAACTGTTGCTGAAGTTA
CTGGAAGCAATGTGGTTTCAGTTGCTGAGGACGAGCTTATGAGAATCCTT
ATTCTTGTCCGTAATTTCTTACCTGGACACCATCAAGTTATCAGTGGGGA
ATGGAATGTTGCCGGTGTTGCTTATAGAGCTTATGATCTTGAAGGAAAGA
CAGTGGGAACTGTTGGTTGTGGACGCATTGGCAAGCTGTTGCTCCAACGA
CTTAAACCTTTNCATTGTAATCTCCTTTATCATGACCG
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