FC873787

Overview
NameFC873787
Unique NameFC873787
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length430
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig308 contig Ccv1_Contig308:457..886. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873787 vs. ExPASy Swiss-Prot
Match: PSBQ2_ARATH (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=PSBQ2 PE=1 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 1.370e-39
Identity = 78/99 (78.79%), Postives = 92/99 (92.93%), Query Frame = 3
Query:    6 RAHASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 302
            RA  SAK+I+NVK  IDKKAWPYVQNDLRLRASYLRYDLNT+ISAKPK+EKQSLK+LT KLFQTI NLD+AA+ KS+P+AEKYY+ETVS+LN+VL+K+G
Sbjct:  132 RAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVISAKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSLNNVLAKLG 230          
BLAST of FC873787 vs. ExPASy Swiss-Prot
Match: PSBQ1_ARATH (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=PSBQ1 PE=1 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 1.674e-37
Identity = 77/99 (77.78%), Postives = 88/99 (88.89%), Query Frame = 3
Query:    6 RAHASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 302
            RA  SAKDI+NVK LID+KAWPYVQNDLR +ASYLRYDLNTIIS+KPKDEK+SLK+LT KLF TI NLD+AAK KS  +AEKYYAETVS LN+VL+K+G
Sbjct:  126 RAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKLG 224          
BLAST of FC873787 vs. ExPASy Swiss-Prot
Match: PSBQ1_MAIZE (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays GN=PSBQ1 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 2.856e-37
Identity = 74/99 (74.75%), Postives = 86/99 (86.87%), Query Frame = 3
Query:    6 RAHASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 302
            R   SA+DI+N+K LIDKKAWPYVQNDLRLRASYLRYDL T+I++KPK+EK+SLK LTGKLF TI +LDHAAKIKSTPEAEKY+A T   L DVL+K+G
Sbjct:  119 RVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVIASKPKEEKKSLKELTGKLFSTIDDLDHAAKIKSTPEAEKYFAATKDALGDVLAKLG 217          
BLAST of FC873787 vs. ExPASy Swiss-Prot
Match: PSBQ2_MAIZE (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays GN=PSBQ2 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 6.362e-37
Identity = 73/99 (73.74%), Postives = 86/99 (86.87%), Query Frame = 3
Query:    6 RAHASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 302
            R   SA+DI+N+K LIDKKAWPYVQNDLRLRASYLRYDL T+I++KPK+EK+SLK LTGKLF TI +LDHAAK+KSTPEAEKY+A T   L DVL+K+G
Sbjct:  115 RVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVIASKPKEEKKSLKELTGKLFSTIDDLDHAAKMKSTPEAEKYFAATKDALGDVLAKLG 213          
BLAST of FC873787 vs. ExPASy Swiss-Prot
Match: PSBQ_SPIOL (Oxygen-evolving enhancer protein 3, chloroplastic OS=Spinacia oleracea GN=PSBQ PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 4.124e-36
Identity = 72/100 (72.00%), Postives = 86/100 (86.00%), Query Frame = 3
Query:    3 ERAHASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 302
            +RA  SA +ILNVK+ ID+KAWP +QNDLRLRASYLRYDL T+ISAKPKDEK+SL+ LT KLF +I NLDHAAKIKS  EAEKYY +TVS +N+VL+K+G
Sbjct:  133 QRAKVSASEILNVKQFIDRKAWPSLQNDLRLRASYLRYDLKTVISAKPKDEKKSLQELTSKLFSSIDNLDHAAKIKSPTEAEKYYGQTVSNINEVLAKLG 232          
BLAST of FC873787 vs. ExPASy Swiss-Prot
Match: PSBQ_ORYSJ (Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0544800 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.467e-33
Identity = 69/99 (69.70%), Postives = 83/99 (83.84%), Query Frame = 3
Query:    6 RAHASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 302
            RA  SA+DI+N+K LI+KK WP+V++DLRLRASYLRYDL T+I++KPKDEK+ LK+LTGKLF TI  LDHAAKIKS  EAEKYY  T S L DVL+K+G
Sbjct:  119 RAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVINSKPKDEKKGLKDLTGKLFATIDGLDHAAKIKSPEEAEKYYTLTKSALGDVLAKLG 217          
BLAST of FC873787 vs. ExPASy Swiss-Prot
Match: PSBQ_ORYSI (Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_025465 PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 1.467e-33
Identity = 69/99 (69.70%), Postives = 83/99 (83.84%), Query Frame = 3
Query:    6 RAHASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 302
            RA  SA+DI+N+K LI+KK WP+V++DLRLRASYLRYDL T+I++KPKDEK+ LK+LTGKLF TI  LDHAAKIKS  EAEKYY  T S L DVL+K+G
Sbjct:  119 RAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVINSKPKDEKKGLKDLTGKLFATIDGLDHAAKIKSPEEAEKYYTLTKSALGDVLAKLG 217          
BLAST of FC873787 vs. ExPASy Swiss-Prot
Match: PSBQ_ONOVI (Oxygen-evolving enhancer protein 3, chloroplastic OS=Onobrychis viciifolia GN=PSBQ PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.813e-31
Identity = 68/101 (67.33%), Postives = 83/101 (82.18%), Query Frame = 3
Query:    3 ERAHASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLK-NLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 302
            +R   SAK+I+ VK+ ID+K      NDLRLRASYLRYDLNT+IS+KPK++KQSLK +  GKLFQ I NLD+AAK+KS P+AEKYYA+ VSTLNDVLSK+G
Sbjct:  131 QRQRESAKEIVAVKKFIDQKLGHMFINDLRLRASYLRYDLNTVISSKPKEQKQSLKESSAGKLFQDIDNLDYAAKLKSAPQAEKYYADAVSTLNDVLSKIG 231          
The following BLAST results are available for this feature:
BLAST of FC873787 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PSBQ2_ARATH1.370e-3978.79Oxygen-evolving enhancer protein 3-2, chloroplasti... [more]
PSBQ1_ARATH1.674e-3777.78Oxygen-evolving enhancer protein 3-1, chloroplasti... [more]
PSBQ1_MAIZE2.856e-3774.75Oxygen-evolving enhancer protein 3-1, chloroplasti... [more]
PSBQ2_MAIZE6.362e-3773.74Oxygen-evolving enhancer protein 3-2, chloroplasti... [more]
PSBQ_SPIOL4.124e-3672.00Oxygen-evolving enhancer protein 3, chloroplastic ... [more]
PSBQ_ORYSJ1.467e-3369.70Oxygen-evolving enhancer protein 3, chloroplastic ... [more]
PSBQ_ORYSI1.467e-3369.70Oxygen-evolving enhancer protein 3, chloroplastic ... [more]
PSBQ_ONOVI6.813e-3167.33Oxygen-evolving enhancer protein 3, chloroplastic ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI3DB03FM1 AbsDev Citrus clementina cDNA clone KN0AAI3DB03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873787 ID=FC873787; Name=FC873787; organism=Citrus clementina; type=EST; length=430bp
CAGAGAGAGCACATGCGTCAGCAAAGGATATTCTTAATGTCAAGGAATTA
ATAGACAAGAAGGCCTGGCCCTATGTTCAGAATGATCTCCGTCTCAGGGC
CTCATACCTTCGCTATGACCTCAACACTATCATTTCTGCTAAGCCCAAAG
ATGAGAAACAATCCCTCAAGAACCTCACTGGAAAGCTCTTCCAGACCATC
GGCAATCTTGACCATGCGGCAAAGATTAAGAGCACTCCTGAAGCAGAGAA
ATACTATGCGGAGACTGTATCTACCCTGAACGATGTTCTCTCCAAGGTTG
GCTAAGCAGAATTAATATAATCTGATGTAAACTATATTTTTCATTTTGTG
AGGCAACAACTTCTGTGAATTTTATTGCAAGCTGACGTTCCGCTCAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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